Wall clock time and date at job start Fri Apr 10 2020 18:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 111.00011 * 2 1 4 4 C 1.46896 * 111.00328 * 123.95574 * 2 1 3 5 5 C 1.53003 * 109.47089 * 66.04404 * 4 2 1 6 6 C 1.50702 * 109.46892 * 180.02562 * 5 4 2 7 7 C 1.38118 * 120.03864 * 265.27329 * 6 5 4 8 8 C 1.38274 * 120.07408 * 180.27908 * 7 6 5 9 9 C 1.38312 * 120.15226 * 359.72403 * 8 7 6 10 10 C 1.38070 * 120.07651 * 0.02562 * 9 8 7 11 11 C 1.38908 * 120.03795 * 85.00128 * 6 5 4 12 12 N 1.39723 * 120.07835 * 359.97438 * 11 6 5 13 13 C 1.34770 * 120.00400 * 154.88390 * 12 11 6 14 14 O 1.21381 * 120.00393 * 354.47014 * 13 12 11 15 15 C 1.49357 * 120.00227 * 174.47446 * 13 12 11 16 16 O 1.21358 * 119.99921 * 359.72391 * 15 13 12 17 17 N 1.34781 * 119.99933 * 179.97438 * 15 13 12 18 18 C 1.46497 * 119.99574 * 180.02562 * 17 15 13 19 19 C 1.50698 * 109.47176 * 180.02562 * 18 17 15 20 20 H 1.08006 * 119.99557 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00462 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99997 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00048 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47019 * 89.99954 * 23 21 19 25 25 H 1.48503 * 109.46958 * 209.99934 * 23 21 19 26 26 H 1.48499 * 109.47160 * 329.99993 * 23 21 19 27 27 H 1.08999 * 109.47165 * 296.04425 * 1 2 3 28 28 H 1.08997 * 109.47161 * 56.04302 * 1 2 3 29 29 H 1.09005 * 109.47014 * 176.05022 * 1 2 3 30 30 H 1.08994 * 109.47187 * 183.96027 * 3 2 1 31 31 H 1.09004 * 109.46766 * 303.95644 * 3 2 1 32 32 H 1.08994 * 109.47059 * 63.95242 * 3 2 1 33 33 H 1.09004 * 109.47228 * 306.04891 * 4 2 1 34 34 H 1.08991 * 109.47503 * 186.04509 * 4 2 1 35 35 H 1.09000 * 109.47403 * 60.00237 * 5 4 2 36 36 H 1.09005 * 109.47249 * 299.99906 * 5 4 2 37 37 H 1.08006 * 119.96233 * 0.02562 * 7 6 5 38 38 H 1.08004 * 119.91944 * 179.74843 * 8 7 6 39 39 H 1.08005 * 119.95585 * 180.02562 * 9 8 7 40 40 H 1.08001 * 120.03791 * 180.02562 * 10 9 8 41 41 H 0.97001 * 119.99586 * 334.87913 * 12 11 6 42 42 H 0.96996 * 120.00447 * 359.97438 * 17 15 13 43 43 H 1.09002 * 109.47108 * 299.99866 * 18 17 15 44 44 H 1.09000 * 109.47531 * 59.99687 * 18 17 15 45 45 H 0.97003 * 120.00316 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6315 -2.2426 0.9702 6 6 2.1711 -3.0283 2.1375 7 6 3.3982 -3.6549 2.0412 8 6 3.8915 -4.3808 3.1097 9 6 3.1610 -4.4773 4.2803 10 6 1.9360 -3.8492 4.3853 11 6 1.4376 -3.1185 3.3137 12 7 0.1987 -2.4807 3.4169 13 6 -0.7251 -2.9392 4.2845 14 8 -0.5213 -3.9635 4.9031 15 6 -1.9998 -2.1869 4.4849 16 8 -2.2015 -1.1602 3.8702 17 7 -2.9238 -2.6458 5.3522 18 6 -4.1743 -1.9082 5.5483 19 6 -5.0274 -2.6263 6.5619 20 1 -4.6737 -3.5410 7.0144 21 6 -6.2595 -2.1158 6.9116 22 7 -6.6901 -1.0018 6.3610 23 14 -7.3173 -3.0065 8.1675 24 1 -6.9996 -2.5034 9.5281 25 1 -8.7513 -2.7598 7.8709 26 1 -7.0418 -4.4642 8.1020 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5740 -0.8524 29 1 -0.3633 -1.0253 -0.0708 30 1 3.0827 1.3432 -0.0710 31 1 1.5897 1.9163 -0.8525 32 1 1.7044 1.8723 0.9232 33 1 1.5612 -0.3873 2.0628 34 1 3.0797 -0.6611 1.1755 35 1 2.0658 -2.6214 0.0450 36 1 0.5472 -2.3475 0.9323 37 1 3.9713 -3.5812 1.1287 38 1 4.8495 -4.8731 3.0302 39 1 3.5495 -5.0448 5.1131 40 1 1.3664 -3.9247 5.2997 41 1 0.0035 -1.7079 2.8641 42 1 -2.7612 -3.4647 5.8460 43 1 -3.9510 -0.9038 5.9082 44 1 -4.7106 -1.8440 4.6016 45 1 -7.5570 -0.6428 6.6067 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427849458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:09 Heat of formation + Delta-G solvation = -61.227423 kcal Electronic energy + Delta-G solvation = -26401.428732 eV Core-core repulsion = 22611.002169 eV Total energy + Delta-G solvation = -3790.426562 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.29933 -40.62939 -39.38556 -38.38925 -36.72612 -35.86178 -34.42873 -33.97546 -31.05569 -29.87704 -29.54251 -28.50558 -26.54564 -25.57095 -24.60410 -23.23722 -22.52218 -21.71542 -21.41039 -20.11819 -18.66681 -18.32947 -17.61682 -17.20144 -16.97961 -16.94534 -16.55375 -16.20791 -16.01708 -15.72964 -15.66918 -15.28732 -15.03644 -14.68580 -14.26885 -14.11908 -14.10700 -13.99442 -13.80430 -13.29720 -13.13208 -12.96984 -12.77645 -12.75022 -12.64984 -12.53245 -12.35557 -12.21408 -12.09407 -11.78658 -11.58920 -11.55361 -10.87380 -10.69774 -10.11431 -9.73546 -9.39240 -9.13657 -8.33889 -6.50262 -0.13926 0.41391 0.63474 1.20113 1.43251 1.44091 1.56078 2.00732 2.33712 2.60771 2.78968 2.99473 3.01609 3.34615 3.79740 3.86851 4.08935 4.10914 4.21421 4.33217 4.38793 4.46312 4.49060 4.49995 4.58230 4.66730 4.72828 4.90204 4.93566 4.99983 5.01437 5.03641 5.13235 5.17689 5.18357 5.23320 5.31930 5.46967 5.54621 5.61744 5.74429 5.91457 5.97664 6.02432 6.05415 6.38351 6.53502 6.65749 6.92889 7.22705 8.77778 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.002980 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.163384 B = 9392.806930 C =11212.118391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.549 5.549 3 C 0.021 3.979 4 C 0.060 3.940 5 C -0.074 4.074 6 C -0.109 4.109 7 C -0.091 4.091 8 C -0.127 4.127 9 C -0.106 4.106 10 C -0.150 4.150 11 C 0.123 3.877 12 N -0.633 5.633 13 C 0.516 3.484 14 O -0.510 6.510 15 C 0.492 3.508 16 O -0.557 6.557 17 N -0.670 5.670 18 C 0.263 3.737 19 C -0.563 4.563 20 H 0.080 0.920 21 C 0.011 3.989 22 N -0.925 5.925 23 Si 0.982 3.018 24 H -0.270 1.270 25 H -0.281 1.281 26 H -0.259 1.259 27 H 0.017 0.983 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.019 0.981 33 H 0.018 0.982 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.060 0.940 37 H 0.157 0.843 38 H 0.155 0.845 39 H 0.143 0.857 40 H 0.125 0.875 41 H 0.422 0.578 42 H 0.413 0.587 43 H 0.005 0.995 44 H 0.006 0.994 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.186 -3.042 -11.197 25.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.273 5.273 3 C -0.127 4.127 4 C -0.068 4.068 5 C -0.112 4.112 6 C -0.112 4.112 7 C -0.109 4.109 8 C -0.146 4.146 9 C -0.125 4.125 10 C -0.171 4.171 11 C 0.029 3.971 12 N -0.278 5.278 13 C 0.298 3.702 14 O -0.385 6.385 15 C 0.272 3.728 16 O -0.437 6.437 17 N -0.320 5.320 18 C 0.142 3.858 19 C -0.600 4.600 20 H 0.098 0.902 21 C -0.189 4.189 22 N -0.563 5.563 23 Si 0.805 3.195 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.183 1.183 27 H 0.035 0.965 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.038 0.962 33 H 0.037 0.963 34 H 0.110 0.890 35 H 0.121 0.879 36 H 0.078 0.922 37 H 0.175 0.825 38 H 0.173 0.827 39 H 0.161 0.839 40 H 0.142 0.858 41 H 0.261 0.739 42 H 0.250 0.750 43 H 0.023 0.977 44 H 0.024 0.976 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 23.098 -3.097 -11.591 26.028 hybrid contribution -1.495 0.507 1.457 2.148 sum 21.603 -2.591 -10.133 24.002 Atomic orbital electron populations 1.22518 0.87457 1.02664 1.00782 1.62068 1.07947 1.14671 1.42611 1.22458 1.01454 0.88023 1.00746 1.22151 1.01158 0.92697 0.90783 1.20534 1.00702 0.93433 0.96526 1.19726 0.96721 1.01991 0.92730 1.21228 0.93744 0.95771 1.00167 1.21530 1.01039 0.99302 0.92710 1.21322 0.93158 0.98587 0.99410 1.21429 0.97539 0.99887 0.98200 1.17927 0.85061 0.98641 0.95447 1.43142 1.12779 1.32448 1.39464 1.20146 0.84665 0.84745 0.80624 1.90706 1.78214 1.23115 1.46487 1.20191 0.85266 0.85674 0.81667 1.90711 1.79272 1.25130 1.48602 1.46154 1.17894 1.27958 1.40000 1.18846 0.79437 0.91519 0.96007 1.21556 1.02987 1.10748 1.24746 0.90219 1.25959 0.98855 0.95627 0.98506 1.70096 1.20914 1.21418 1.43865 0.85188 0.77077 0.79038 0.78153 1.19556 1.20591 1.18343 0.96479 0.90245 0.91143 0.90030 0.90458 0.96215 0.96325 0.88987 0.87899 0.92182 0.82514 0.82725 0.83906 0.85766 0.73871 0.75001 0.97699 0.97599 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 9.32 127.69 1.19 1.47 16 2 N -0.55 -9.88 5.02 -948.87 -4.76 -14.64 16 3 C 0.02 0.32 9.57 127.69 1.22 1.54 16 4 C 0.06 1.06 4.85 86.31 0.42 1.47 16 5 C -0.07 -1.30 4.64 29.85 0.14 -1.16 16 6 C -0.11 -2.15 5.15 -19.73 -0.10 -2.25 16 7 C -0.09 -1.36 9.68 22.25 0.22 -1.15 16 8 C -0.13 -1.88 10.04 22.30 0.22 -1.65 16 9 C -0.11 -2.04 10.04 22.25 0.22 -1.82 16 10 C -0.15 -3.91 8.72 22.40 0.20 -3.71 16 11 C 0.12 3.16 6.41 38.21 0.24 3.41 16 12 N -0.63 -18.34 4.97 -304.84 -1.51 -19.86 16 13 C 0.52 17.96 7.69 87.24 0.67 18.63 16 14 O -0.51 -18.56 13.64 -3.34 -0.05 -18.60 16 15 C 0.49 20.30 7.89 87.24 0.69 20.99 16 16 O -0.56 -25.36 16.48 -3.27 -0.05 -25.41 16 17 N -0.67 -29.62 5.54 -468.24 -2.59 -32.21 16 18 C 0.26 14.12 5.43 85.63 0.46 14.59 16 19 C -0.56 -30.52 9.28 25.60 0.24 -30.28 16 20 H 0.08 4.02 7.60 -2.91 -0.02 4.00 16 21 C 0.01 0.60 5.46 84.65 0.46 1.06 16 22 N -0.92 -54.24 13.29 21.45 0.28 -53.95 16 23 Si 0.98 42.15 29.54 68.60 2.03 44.17 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 25 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 26 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 27 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.08 1.38 8.12 -2.39 -0.02 1.36 16 29 H 0.07 1.39 6.47 -2.38 -0.02 1.37 16 30 H 0.08 1.00 8.12 -2.39 -0.02 0.98 16 31 H 0.08 1.04 8.12 -2.39 -0.02 1.02 16 32 H 0.02 0.32 8.14 -2.39 -0.02 0.31 16 33 H 0.02 0.39 7.42 -2.38 -0.02 0.37 16 34 H 0.09 1.37 8.06 -2.39 -0.02 1.35 16 35 H 0.10 1.50 8.05 -2.39 -0.02 1.48 16 36 H 0.06 1.22 5.68 -2.38 -0.01 1.21 16 37 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 38 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 39 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 40 H 0.12 3.74 5.79 -2.91 -0.02 3.72 16 41 H 0.42 11.64 6.24 -92.71 -0.58 11.06 16 42 H 0.41 16.70 7.79 -92.71 -0.72 15.97 16 43 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 44 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -66.43 376.46 -0.45 -66.87 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: -0.28 Total: 32.49 kcal Atomic # 6 Polarization: 14.63 SS G_CDS: 6.49 Total: 21.13 kcal Atomic # 7 Polarization: -112.07 SS G_CDS: -8.59 Total: -120.66 kcal Atomic # 8 Polarization: -43.91 SS G_CDS: -0.10 Total: -44.01 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -66.43 -0.45 -66.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427849458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.646 kcal (2) G-P(sol) polarization free energy of solvation -66.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds