Wall clock time and date at job start Fri Apr 10 2020 18:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 110.99850 * 2 1 4 4 C 1.46898 * 110.99979 * 123.95543 * 2 1 3 5 5 C 1.52998 * 109.46976 * 170.00480 * 4 2 1 6 6 C 1.50703 * 109.47220 * 179.97438 * 5 4 2 7 7 C 1.38291 * 119.92231 * 270.27241 * 6 5 4 8 8 C 1.38094 * 120.07831 * 180.31970 * 7 6 5 9 9 C 1.38941 * 119.91858 * 359.42498 * 8 7 6 10 10 N 1.39719 * 120.07155 * 180.29740 * 9 8 7 11 11 C 1.34775 * 120.00520 * 324.90415 * 10 9 8 12 12 O 1.21373 * 120.00043 * 4.61716 * 11 10 9 13 13 C 1.49353 * 120.00106 * 184.62094 * 11 10 9 14 14 O 1.21360 * 119.99730 * 359.97438 * 13 11 10 15 15 N 1.34780 * 120.00011 * 179.97438 * 13 11 10 16 16 C 1.46496 * 120.00025 * 179.97438 * 15 13 11 17 17 C 1.50697 * 109.47107 * 179.97438 * 16 15 13 18 18 H 1.08007 * 120.00076 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00265 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99515 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00283 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47008 * 90.00122 * 21 19 17 23 23 H 1.48496 * 109.47514 * 210.00481 * 21 19 17 24 24 H 1.48502 * 109.47153 * 330.00708 * 21 19 17 25 25 C 1.38932 * 119.84550 * 0.27511 * 9 8 7 26 26 C 1.38092 * 119.92493 * 359.97438 * 25 9 8 27 27 H 1.09000 * 109.46756 * 296.04663 * 1 2 3 28 28 H 1.09001 * 109.46960 * 56.04331 * 1 2 3 29 29 H 1.08998 * 109.47059 * 176.04651 * 1 2 3 30 30 H 1.08995 * 109.47258 * 183.95398 * 3 2 1 31 31 H 1.08997 * 109.47343 * 303.95389 * 3 2 1 32 32 H 1.09005 * 109.47148 * 63.95262 * 3 2 1 33 33 H 1.08996 * 109.47097 * 49.99721 * 4 2 1 34 34 H 1.09006 * 109.46622 * 289.99746 * 4 2 1 35 35 H 1.08996 * 109.47828 * 59.99688 * 5 4 2 36 36 H 1.09005 * 109.46700 * 299.99661 * 5 4 2 37 37 H 1.08005 * 119.96433 * 0.02650 * 7 6 5 38 38 H 1.07998 * 120.04203 * 179.69693 * 8 7 6 39 39 H 0.97010 * 119.99477 * 144.90273 * 10 9 8 40 40 H 0.97006 * 119.99644 * 0.02562 * 15 13 11 41 41 H 1.09000 * 109.47180 * 300.00613 * 16 15 13 42 42 H 1.09003 * 109.47161 * 60.00315 * 16 15 13 43 43 H 0.97002 * 119.99520 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.02998 * 180.02562 * 25 9 8 45 45 H 1.07997 * 119.95980 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.5045 -0.9552 0.9703 6 6 4.0447 -1.7405 2.1376 7 6 4.4809 -1.0793 3.2712 8 6 4.9827 -1.7953 4.3401 9 6 5.0378 -3.1823 4.2804 10 7 5.5391 -3.9103 5.3626 11 6 6.5524 -3.4121 6.0985 12 8 6.9737 -2.2961 5.8744 13 6 7.1569 -4.2334 7.1897 14 8 6.7353 -5.3491 7.4139 15 7 8.1705 -3.7354 7.9252 16 6 8.7631 -4.5408 8.9959 17 6 9.8688 -3.7601 9.6585 18 1 10.1060 -2.7634 9.3165 19 6 10.5769 -4.3176 10.7020 20 7 10.2876 -5.5310 11.1187 21 14 11.9468 -3.3497 11.5237 22 1 11.3882 -2.5610 12.6513 23 1 12.9763 -4.2881 12.0382 24 1 12.5651 -2.4301 10.5351 25 6 4.5929 -3.8437 3.1425 26 6 4.0971 -3.1210 2.0753 27 1 -0.3633 0.4513 0.9233 28 1 -0.3633 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0827 1.3433 -0.0709 31 1 1.5898 1.9164 -0.8524 32 1 1.7043 1.8724 0.9233 33 1 1.5090 -1.7406 1.1756 34 1 1.7975 -0.2247 2.0628 35 1 3.9910 0.0194 0.9323 36 1 3.7024 -1.4965 0.0451 37 1 4.4336 -0.0013 3.3187 38 1 5.3277 -1.2780 5.2231 39 1 5.1577 -4.7743 5.5842 40 1 8.5072 -2.8435 7.7461 41 1 7.9980 -4.7849 9.7329 42 1 9.1698 -5.4608 8.5760 43 1 10.7860 -5.9234 11.8526 44 1 4.6340 -4.9218 3.0931 45 1 3.7515 -3.6345 1.1903 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427863931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:13 Heat of formation + Delta-G solvation = -43.487992 kcal Electronic energy + Delta-G solvation = -25115.749762 eV Core-core repulsion = 21326.092439 eV Total energy + Delta-G solvation = -3789.657323 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.85353 -39.39741 -38.20828 -37.61107 -35.42156 -34.31782 -32.47729 -32.27907 -31.09520 -28.67480 -27.99807 -27.67272 -25.38364 -24.06810 -23.15129 -22.39899 -21.59290 -20.80745 -19.91810 -18.71896 -17.51071 -16.58130 -16.34984 -16.04473 -15.72934 -15.62731 -15.37141 -15.14506 -14.89192 -14.75502 -14.30301 -13.92478 -13.81595 -13.71207 -13.23647 -13.14096 -13.09968 -12.75955 -12.32867 -12.23209 -12.08521 -12.02117 -11.90884 -11.70422 -11.42280 -11.17695 -11.06066 -10.97864 -10.93604 -10.36649 -10.27973 -9.50780 -9.20765 -9.02197 -8.85551 -8.80738 -8.20599 -8.12410 -6.24202 -4.31669 0.99029 1.27440 1.82928 2.63695 3.22217 3.28613 3.31837 3.43232 3.57194 3.73652 4.03927 4.30506 4.54102 4.63939 4.72438 4.79347 4.86566 4.90963 4.97396 5.02772 5.12627 5.13577 5.20010 5.23628 5.25640 5.35640 5.44496 5.44842 5.50090 5.67886 5.76476 5.87852 6.13347 6.18696 6.33917 6.45504 6.57896 6.59362 6.86009 6.99033 7.05500 7.19809 7.33394 7.52851 7.82538 7.85573 8.34476 8.52962 8.79907 9.34712 10.85833 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.033227 B = 0.001840 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.475228 B =15213.686565 C =15798.735470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.549 5.549 3 C 0.019 3.981 4 C 0.059 3.941 5 C -0.073 4.073 6 C -0.101 4.101 7 C -0.098 4.098 8 C -0.118 4.118 9 C 0.144 3.856 10 N -0.652 5.652 11 C 0.509 3.491 12 O -0.505 6.505 13 C 0.491 3.509 14 O -0.536 6.536 15 N -0.670 5.670 16 C 0.246 3.754 17 C -0.547 4.547 18 H 0.067 0.933 19 C 0.065 3.935 20 N -0.885 5.885 21 Si 0.907 3.093 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C -0.140 4.140 26 C -0.096 4.096 27 H 0.025 0.975 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.026 0.974 33 H 0.076 0.924 34 H 0.036 0.964 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.123 0.877 38 H 0.141 0.859 39 H 0.423 0.577 40 H 0.404 0.596 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.267 0.733 44 H 0.128 0.872 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.853 9.556 -21.481 29.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.273 5.273 3 C -0.129 4.129 4 C -0.069 4.069 5 C -0.111 4.111 6 C -0.103 4.103 7 C -0.116 4.116 8 C -0.138 4.138 9 C 0.050 3.950 10 N -0.298 5.298 11 C 0.292 3.708 12 O -0.378 6.378 13 C 0.270 3.730 14 O -0.415 6.415 15 N -0.319 5.319 16 C 0.126 3.874 17 C -0.586 4.586 18 H 0.085 0.915 19 C -0.139 4.139 20 N -0.522 5.522 21 Si 0.734 3.266 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.196 1.196 25 C -0.160 4.160 26 C -0.115 4.115 27 H 0.044 0.956 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.044 0.956 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.141 0.859 38 H 0.158 0.842 39 H 0.261 0.739 40 H 0.239 0.761 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.077 0.923 44 H 0.146 0.854 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -17.551 9.154 -21.675 29.354 hybrid contribution 0.466 0.765 1.329 1.603 sum -17.086 9.919 -20.346 28.360 Atomic orbital electron populations 1.22382 0.87223 1.02349 1.00498 1.61999 1.07915 1.14044 1.43356 1.22462 1.01247 0.88726 1.00481 1.22159 0.95114 0.98405 0.91178 1.20538 0.94296 0.99994 0.96262 1.19787 1.00824 0.93834 0.95826 1.20919 0.98285 0.99732 0.92710 1.21334 0.99534 0.92555 1.00376 1.17818 0.97991 0.91514 0.87689 1.43224 1.34228 1.23636 1.28755 1.20908 0.79758 0.87042 0.83102 1.90722 1.60620 1.18966 1.67541 1.19676 0.82905 0.86954 0.83512 1.90737 1.62116 1.19356 1.69279 1.46427 1.31790 1.20303 1.33358 1.19361 0.93270 0.91199 0.83572 1.21202 1.17579 1.02099 1.17674 0.91534 1.24940 0.97480 0.95038 0.96411 1.69969 1.40768 1.14263 1.27196 0.86354 0.81092 0.79560 0.79591 1.20371 1.20936 1.19627 1.20949 1.02757 1.00247 0.92055 1.20795 0.99390 0.93238 0.98058 0.95640 0.91354 0.91279 0.90920 0.91455 0.95570 0.90533 0.94536 0.91004 0.90154 0.85923 0.84168 0.73908 0.76065 0.94665 0.94665 0.92311 0.85403 0.85602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.57 60.07 0.57 0.71 16 2 N -0.55 -3.91 5.02 -251.26 -1.26 -5.17 16 3 C 0.02 0.12 9.32 60.07 0.56 0.68 16 4 C 0.06 0.43 4.94 -3.83 -0.02 0.41 16 5 C -0.07 -0.54 5.26 -27.88 -0.15 -0.69 16 6 C -0.10 -0.94 5.14 -104.58 -0.54 -1.47 16 7 C -0.10 -1.03 9.69 -39.61 -0.38 -1.41 16 8 C -0.12 -1.51 8.70 -39.37 -0.34 -1.85 16 9 C 0.14 1.83 6.30 -83.75 -0.53 1.30 16 10 N -0.65 -8.95 5.32 -10.29 -0.05 -9.00 16 11 C 0.51 8.56 7.73 -11.63 -0.09 8.47 16 12 O -0.50 -9.06 13.91 5.48 0.08 -8.98 16 13 C 0.49 9.75 7.89 -11.63 -0.09 9.66 16 14 O -0.54 -11.72 16.48 5.49 0.09 -11.63 16 15 N -0.67 -14.34 5.54 -61.94 -0.34 -14.68 16 16 C 0.25 6.33 5.43 -5.20 -0.03 6.30 16 17 C -0.55 -14.67 9.28 -34.44 -0.32 -14.99 16 18 H 0.07 1.69 7.60 -52.48 -0.40 1.29 16 19 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 20 N -0.88 -25.42 13.29 55.43 0.74 -24.68 16 21 Si 0.91 20.67 29.54 -169.99 -5.02 15.65 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 C -0.14 -1.45 9.97 -39.38 -0.39 -1.84 16 26 C -0.10 -0.88 9.69 -39.62 -0.38 -1.26 16 27 H 0.02 0.15 8.14 -51.93 -0.42 -0.28 16 28 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 29 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 30 H 0.07 0.42 6.47 -51.93 -0.34 0.08 16 31 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 32 H 0.03 0.16 8.14 -51.93 -0.42 -0.27 16 33 H 0.08 0.55 8.06 -51.93 -0.42 0.13 16 34 H 0.04 0.28 8.12 -51.93 -0.42 -0.14 16 35 H 0.07 0.51 6.50 -51.93 -0.34 0.17 16 36 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 37 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 38 H 0.14 1.99 6.22 -52.49 -0.33 1.66 16 39 H 0.42 5.13 8.30 -40.82 -0.34 4.79 16 40 H 0.40 8.02 7.79 -40.82 -0.32 7.71 16 41 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 45 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 381.32 15.07 5.75 5.75 Total: -1.00 -30.78 381.32 -8.93 -39.71 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -6.68 Total: 7.36 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -2.22 Total: 5.69 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.92 Total: -53.54 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: 0.17 Total: -20.62 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.78 -8.93 -39.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427863931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.775 kcal (2) G-P(sol) polarization free energy of solvation -30.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds