Wall clock time and date at job start Fri Apr 10 2020 18:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46904 * 111.00061 * 2 1 4 4 C 1.46899 * 111.00368 * 123.96012 * 2 1 3 5 5 H 1.09003 * 108.31734 * 190.32177 * 4 2 1 6 6 C 1.52568 * 108.51388 * 72.70505 * 4 2 1 7 7 C 1.50876 * 109.35732 * 153.73505 * 6 4 2 8 8 C 1.53957 * 110.09521 * 91.88576 * 7 6 4 9 9 N 1.47610 * 112.14011 * 319.43254 * 8 7 6 10 10 S 1.65599 * 118.63920 * 137.84450 * 9 8 7 11 11 O 1.42106 * 106.39863 * 208.13780 * 10 9 8 12 12 O 1.42100 * 106.40410 * 341.06098 * 10 9 8 13 13 N 1.65603 * 107.21565 * 94.59941 * 10 9 8 14 14 C 1.46503 * 119.99650 * 95.37313 * 13 10 9 15 15 C 1.46494 * 120.00377 * 275.37068 * 13 10 9 16 16 C 1.50698 * 109.47319 * 95.85593 * 15 13 10 17 17 H 1.08000 * 119.99730 * 4.93431 * 16 15 13 18 18 C 1.37875 * 120.00358 * 184.93908 * 16 15 13 19 19 N 1.31519 * 119.99658 * 5.13469 * 18 16 15 20 20 Si 1.86792 * 120.00201 * 185.13497 * 18 16 15 21 21 H 1.48506 * 109.47444 * 5.00439 * 20 18 16 22 22 H 1.48506 * 109.47360 * 125.00250 * 20 18 16 23 23 H 1.48499 * 109.47236 * 245.00437 * 20 18 16 24 24 C 1.44576 * 122.71204 * 317.86639 * 9 8 7 25 25 C 1.47098 * 108.51268 * 307.93684 * 4 2 1 26 26 H 1.08997 * 109.47236 * 302.88908 * 1 2 3 27 27 H 1.08999 * 109.47655 * 62.89224 * 1 2 3 28 28 H 1.09007 * 109.47057 * 182.89215 * 1 2 3 29 29 H 1.08996 * 109.47387 * 187.10170 * 3 2 1 30 30 H 1.08994 * 109.47320 * 307.10702 * 3 2 1 31 31 H 1.09007 * 109.46447 * 67.10106 * 3 2 1 32 32 H 1.09004 * 109.48706 * 273.69886 * 6 4 2 33 33 H 1.08996 * 109.48775 * 33.77272 * 6 4 2 34 34 H 1.08999 * 109.36895 * 331.69644 * 7 6 4 35 35 H 1.08998 * 109.37035 * 212.07372 * 7 6 4 36 36 H 1.09003 * 108.94931 * 198.75067 * 8 7 6 37 37 H 1.08992 * 108.95033 * 80.11904 * 8 7 6 38 38 H 1.08999 * 109.47533 * 90.00086 * 14 13 10 39 39 H 1.09005 * 109.46826 * 209.99881 * 14 13 10 40 40 H 1.09003 * 109.47652 * 329.99541 * 14 13 10 41 41 H 1.08993 * 109.47275 * 215.85911 * 15 13 10 42 42 H 1.09006 * 109.47083 * 335.86009 * 15 13 10 43 43 H 0.97002 * 119.99566 * 179.97438 * 19 18 16 44 44 H 1.08999 * 109.45158 * 330.69175 * 24 9 8 45 45 H 1.08995 * 109.45010 * 210.76415 * 24 9 8 46 46 H 1.09007 * 109.32536 * 304.32007 * 25 4 2 47 47 H 1.09001 * 109.32411 * 63.79418 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7661 1.1375 5 1 3.0687 -0.5871 1.2036 6 6 1.7676 -2.2505 0.8688 7 6 2.8007 -3.0581 1.6150 8 6 2.2626 -3.4529 3.0024 9 7 1.5146 -2.3531 3.6426 10 16 0.1038 -2.7078 4.4338 11 8 -0.7015 -1.5393 4.3613 12 8 -0.3199 -3.9750 3.9501 13 7 0.4785 -2.9192 6.0330 14 6 0.3370 -1.8036 6.9720 15 6 0.9514 -4.2215 6.5087 16 6 2.4579 -4.2263 6.5452 17 1 3.0063 -3.3232 6.3211 18 6 3.1362 -5.3834 6.8646 19 7 2.4747 -6.5067 7.0384 20 14 4.9947 -5.3556 7.0506 21 1 5.4839 -3.9590 6.9257 22 1 5.3669 -5.8930 8.3840 23 1 5.6109 -6.1925 5.9899 24 6 1.9627 -0.9790 3.6069 25 6 1.3623 -0.2689 2.3686 26 1 -0.3633 0.5580 0.8629 27 1 -0.3634 0.4683 -0.9147 28 1 -0.3633 -1.0264 0.0519 29 1 3.0776 1.3452 -0.1270 30 1 1.5469 1.9329 -0.8195 31 1 1.7522 1.8539 0.9468 32 1 0.7709 -2.5327 1.2081 33 1 1.8568 -2.4445 -0.2000 34 1 3.7068 -2.4641 1.7344 35 1 3.0338 -3.9594 1.0479 36 1 3.1010 -3.7298 3.6416 37 1 1.6028 -4.3137 2.8943 38 1 -0.6676 -1.8097 7.3948 39 1 1.0689 -1.9080 7.7731 40 1 0.5046 -0.8632 6.4471 41 1 0.5631 -4.4054 7.5103 42 1 0.6019 -5.0034 5.8343 43 1 2.9519 -7.3208 7.2627 44 1 3.0508 -0.9535 3.5478 45 1 1.6366 -0.4673 4.5123 46 1 1.5297 0.8050 2.4520 47 1 0.2904 -0.4621 2.3263 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428874747.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:18 Heat of formation + Delta-G solvation = -62.411664 kcal Electronic energy + Delta-G solvation = -27851.866302 eV Core-core repulsion = 24196.832338 eV Total energy + Delta-G solvation = -3655.033964 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.70121 -36.72573 -36.39023 -35.47903 -35.19465 -32.71954 -32.50929 -31.41892 -27.80578 -27.76353 -26.27177 -25.17626 -25.08322 -23.02910 -22.29210 -20.68085 -19.69024 -18.21988 -17.28361 -16.76799 -16.44459 -16.34963 -15.63620 -15.20820 -14.73823 -14.71593 -14.53975 -14.10117 -13.76275 -13.54198 -13.31876 -13.10239 -12.80014 -12.61906 -12.33301 -12.21114 -12.02436 -11.97294 -11.82893 -11.69769 -11.62354 -11.58149 -11.16909 -11.14518 -10.95608 -10.80064 -10.73936 -10.65363 -10.54203 -10.37631 -10.34305 -10.08036 -9.79426 -8.66337 -8.51865 -8.28753 -8.03169 -6.13894 -4.20081 1.28652 3.21274 3.30149 3.31992 3.49193 3.90399 4.10684 4.33673 4.64508 4.83905 4.97656 5.03304 5.18268 5.19302 5.23671 5.30532 5.34313 5.37850 5.43784 5.48723 5.54912 5.58580 5.69704 5.77810 5.84543 5.90356 5.93731 6.03418 6.05629 6.13549 6.20506 6.27412 6.29331 6.39761 6.49280 6.54032 6.61661 6.97601 7.02095 7.07498 7.31577 7.42958 7.62952 7.83612 8.13251 8.85407 9.45687 10.93916 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.016818 B = 0.004984 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.496471 B = 5616.639048 C = 6361.155629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.545 5.545 3 C 0.020 3.980 4 C 0.089 3.911 5 H 0.075 0.925 6 C -0.103 4.103 7 C -0.124 4.124 8 C 0.116 3.884 9 N -0.993 5.993 10 S 2.783 3.217 11 O -0.999 6.999 12 O -0.980 6.980 13 N -0.998 5.998 14 C 0.106 3.894 15 C 0.244 3.756 16 C -0.537 4.537 17 H 0.063 0.937 18 C 0.065 3.935 19 N -0.888 5.888 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.282 1.282 24 C 0.140 3.860 25 C -0.176 4.176 26 H 0.032 0.968 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.028 0.972 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.053 0.947 41 H 0.032 0.968 42 H 0.054 0.946 43 H 0.264 0.736 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.251 12.514 -10.106 16.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.268 5.268 3 C -0.128 4.128 4 C -0.019 4.019 5 H 0.093 0.907 6 C -0.141 4.141 7 C -0.163 4.163 8 C -0.009 4.009 9 N -0.831 5.831 10 S 2.792 3.208 11 O -0.983 6.983 12 O -0.964 6.964 13 N -0.840 5.840 14 C -0.041 4.041 15 C 0.121 3.879 16 C -0.577 4.577 17 H 0.081 0.919 18 C -0.139 4.139 19 N -0.526 5.526 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.208 1.208 24 C 0.012 3.988 25 C -0.216 4.216 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.047 0.953 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.111 0.889 38 H 0.061 0.939 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.050 0.950 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.414 12.015 -10.882 16.216 hybrid contribution 1.250 0.439 1.220 1.801 sum 0.837 12.454 -9.662 15.784 Atomic orbital electron populations 1.22442 0.87818 1.02359 1.00527 1.62451 1.07996 1.13427 1.42943 1.22415 1.00613 0.89473 1.00306 1.20672 0.99270 0.94047 0.87936 0.90681 1.21060 0.99699 0.92855 1.00507 1.21668 0.98434 1.00530 0.95713 1.21740 0.97908 0.88146 0.93077 1.57471 1.44305 1.12458 1.68819 1.01876 0.73317 0.72621 0.73018 1.93522 1.66777 1.50907 1.87138 1.93553 1.80265 1.42670 1.79896 1.57686 1.82122 1.19711 1.24509 1.21232 1.00958 0.87642 0.94273 1.19215 0.94432 0.77540 0.96664 1.21559 0.91536 0.96396 1.48186 0.91885 1.24959 0.98477 0.95221 0.95197 1.69959 1.35868 0.99502 1.47264 0.86545 0.85481 0.78128 0.77843 1.19764 1.20993 1.20812 1.20917 1.00059 0.80977 0.96868 1.22057 1.02669 1.00257 0.96645 0.94943 0.91834 0.91239 0.91568 0.91766 0.95328 0.92153 0.90829 0.91753 0.90627 0.90602 0.88868 0.93884 0.90878 0.92862 0.94972 0.92831 0.92614 0.90535 0.91099 0.91166 0.90312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 8.54 60.06 0.51 0.70 16 2 N -0.55 -6.19 4.82 -246.93 -1.19 -7.38 16 3 C 0.02 0.19 9.37 60.07 0.56 0.75 16 4 C 0.09 1.06 1.65 -70.77 -0.12 0.94 16 5 H 0.08 0.86 7.19 -51.93 -0.37 0.48 16 6 C -0.10 -1.32 4.28 -28.02 -0.12 -1.44 16 7 C -0.12 -1.58 5.71 -27.30 -0.16 -1.74 16 8 C 0.12 1.90 6.24 -2.93 -0.02 1.88 16 9 N -0.99 -16.62 2.59 -113.30 -0.29 -16.92 16 10 S 2.78 55.70 5.93 -107.50 -0.64 55.06 16 11 O -1.00 -20.16 15.26 -57.17 -0.87 -21.03 16 12 O -0.98 -22.68 15.08 -57.17 -0.86 -23.54 16 13 N -1.00 -20.76 3.23 -123.05 -0.40 -21.16 16 14 C 0.11 1.83 10.32 59.85 0.62 2.44 16 15 C 0.24 6.01 5.44 -5.20 -0.03 5.98 16 16 C -0.54 -13.69 9.37 -34.44 -0.32 -14.02 16 17 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 18 C 0.06 1.71 5.45 -17.82 -0.10 1.61 16 19 N -0.89 -24.92 13.29 55.43 0.74 -24.18 16 20 Si 0.89 20.18 29.54 -169.99 -5.02 15.16 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 C 0.14 1.95 5.26 -4.09 -0.02 1.93 16 25 C -0.18 -2.26 4.13 -28.58 -0.12 -2.37 16 26 H 0.03 0.37 6.67 -51.93 -0.35 0.03 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.82 7.06 -51.93 -0.37 0.46 16 29 H 0.07 0.58 8.12 -51.93 -0.42 0.15 16 30 H 0.06 0.54 8.11 -51.93 -0.42 0.12 16 31 H 0.03 0.27 6.40 -51.92 -0.33 -0.07 16 32 H 0.06 0.88 7.10 -51.93 -0.37 0.51 16 33 H 0.07 0.89 8.05 -51.93 -0.42 0.47 16 34 H 0.06 0.75 7.32 -51.93 -0.38 0.37 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.09 1.70 6.59 -51.93 -0.34 1.36 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 40 H 0.05 0.81 7.18 -51.93 -0.37 0.43 16 41 H 0.03 0.82 8.11 -51.93 -0.42 0.40 16 42 H 0.05 1.46 6.97 -51.93 -0.36 1.10 16 43 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 45 H 0.07 0.97 7.33 -51.93 -0.38 0.59 16 46 H 0.07 0.80 6.33 -51.92 -0.33 0.48 16 47 H 0.08 1.17 5.65 -51.93 -0.29 0.88 16 LS Contribution 365.83 15.07 5.51 5.51 Total: -1.00 -30.36 365.83 -10.33 -40.69 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -8.00 Total: 1.11 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 0.70 Total: -3.33 kcal Atomic # 7 Polarization: -68.49 SS G_CDS: -1.15 Total: -69.63 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: -1.73 Total: -44.57 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: 55.70 SS G_CDS: -0.64 Total: 55.06 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.36 -10.33 -40.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428874747.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.718 kcal (2) G-P(sol) polarization free energy of solvation -30.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds