Wall clock time and date at job start Fri Apr 10 2020 18:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46904 * 111.00061 * 2 1 4 4 C 1.46899 * 111.00368 * 123.96012 * 2 1 3 5 5 H 1.09003 * 108.31734 * 190.32177 * 4 2 1 6 6 C 1.52568 * 108.51388 * 72.70505 * 4 2 1 7 7 C 1.50876 * 109.35732 * 153.73505 * 6 4 2 8 8 C 1.53957 * 110.09521 * 91.88576 * 7 6 4 9 9 N 1.47610 * 112.14011 * 319.43254 * 8 7 6 10 10 S 1.65599 * 118.63920 * 137.84450 * 9 8 7 11 11 O 1.42106 * 106.39863 * 208.13780 * 10 9 8 12 12 O 1.42100 * 106.40410 * 341.06098 * 10 9 8 13 13 N 1.65603 * 107.21565 * 94.59941 * 10 9 8 14 14 C 1.46503 * 119.99650 * 95.37313 * 13 10 9 15 15 C 1.46494 * 120.00377 * 275.37068 * 13 10 9 16 16 C 1.50698 * 109.47319 * 95.85593 * 15 13 10 17 17 H 1.08000 * 119.99730 * 4.93431 * 16 15 13 18 18 C 1.37875 * 120.00358 * 184.93908 * 16 15 13 19 19 N 1.31519 * 119.99658 * 5.13469 * 18 16 15 20 20 Si 1.86792 * 120.00201 * 185.13497 * 18 16 15 21 21 H 1.48506 * 109.47444 * 5.00439 * 20 18 16 22 22 H 1.48506 * 109.47360 * 125.00250 * 20 18 16 23 23 H 1.48499 * 109.47236 * 245.00437 * 20 18 16 24 24 C 1.44576 * 122.71204 * 317.86639 * 9 8 7 25 25 C 1.47098 * 108.51268 * 307.93684 * 4 2 1 26 26 H 1.08997 * 109.47236 * 302.88908 * 1 2 3 27 27 H 1.08999 * 109.47655 * 62.89224 * 1 2 3 28 28 H 1.09007 * 109.47057 * 182.89215 * 1 2 3 29 29 H 1.08996 * 109.47387 * 187.10170 * 3 2 1 30 30 H 1.08994 * 109.47320 * 307.10702 * 3 2 1 31 31 H 1.09007 * 109.46447 * 67.10106 * 3 2 1 32 32 H 1.09004 * 109.48706 * 273.69886 * 6 4 2 33 33 H 1.08996 * 109.48775 * 33.77272 * 6 4 2 34 34 H 1.08999 * 109.36895 * 331.69644 * 7 6 4 35 35 H 1.08998 * 109.37035 * 212.07372 * 7 6 4 36 36 H 1.09003 * 108.94931 * 198.75067 * 8 7 6 37 37 H 1.08992 * 108.95033 * 80.11904 * 8 7 6 38 38 H 1.08999 * 109.47533 * 90.00086 * 14 13 10 39 39 H 1.09005 * 109.46826 * 209.99881 * 14 13 10 40 40 H 1.09003 * 109.47652 * 329.99541 * 14 13 10 41 41 H 1.08993 * 109.47275 * 215.85911 * 15 13 10 42 42 H 1.09006 * 109.47083 * 335.86009 * 15 13 10 43 43 H 0.97002 * 119.99566 * 179.97438 * 19 18 16 44 44 H 1.08999 * 109.45158 * 330.69175 * 24 9 8 45 45 H 1.08995 * 109.45010 * 210.76415 * 24 9 8 46 46 H 1.09007 * 109.32536 * 304.32007 * 25 4 2 47 47 H 1.09001 * 109.32411 * 63.79418 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7661 1.1375 5 1 3.0687 -0.5871 1.2036 6 6 1.7676 -2.2505 0.8688 7 6 2.8007 -3.0581 1.6150 8 6 2.2626 -3.4529 3.0024 9 7 1.5146 -2.3531 3.6426 10 16 0.1038 -2.7078 4.4338 11 8 -0.7015 -1.5393 4.3613 12 8 -0.3199 -3.9750 3.9501 13 7 0.4785 -2.9192 6.0330 14 6 0.3370 -1.8036 6.9720 15 6 0.9514 -4.2215 6.5087 16 6 2.4579 -4.2263 6.5452 17 1 3.0063 -3.3232 6.3211 18 6 3.1362 -5.3834 6.8646 19 7 2.4747 -6.5067 7.0384 20 14 4.9947 -5.3556 7.0506 21 1 5.4839 -3.9590 6.9257 22 1 5.3669 -5.8930 8.3840 23 1 5.6109 -6.1925 5.9899 24 6 1.9627 -0.9790 3.6069 25 6 1.3623 -0.2689 2.3686 26 1 -0.3633 0.5580 0.8629 27 1 -0.3634 0.4683 -0.9147 28 1 -0.3633 -1.0264 0.0519 29 1 3.0776 1.3452 -0.1270 30 1 1.5469 1.9329 -0.8195 31 1 1.7522 1.8539 0.9468 32 1 0.7709 -2.5327 1.2081 33 1 1.8568 -2.4445 -0.2000 34 1 3.7068 -2.4641 1.7344 35 1 3.0338 -3.9594 1.0479 36 1 3.1010 -3.7298 3.6416 37 1 1.6028 -4.3137 2.8943 38 1 -0.6676 -1.8097 7.3948 39 1 1.0689 -1.9080 7.7731 40 1 0.5046 -0.8632 6.4471 41 1 0.5631 -4.4054 7.5103 42 1 0.6019 -5.0034 5.8343 43 1 2.9519 -7.3208 7.2627 44 1 3.0508 -0.9535 3.5478 45 1 1.6366 -0.4673 4.5123 46 1 1.5297 0.8050 2.4520 47 1 0.2904 -0.4621 2.3263 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428874747.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:17 Heat of formation + Delta-G solvation = -83.886704 kcal Electronic energy + Delta-G solvation = -27852.797530 eV Core-core repulsion = 24196.832338 eV Total energy + Delta-G solvation = -3655.965191 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.70427 -38.39836 -37.49837 -37.20832 -36.88834 -34.47338 -33.83589 -32.48501 -29.65920 -28.57149 -27.37825 -26.76446 -26.28041 -24.17816 -23.99888 -21.87670 -20.68257 -19.73165 -18.83965 -18.41956 -18.28914 -17.59516 -16.91544 -16.56285 -16.22790 -15.77954 -15.64243 -15.36251 -15.14452 -14.94980 -14.72581 -14.30034 -14.09135 -13.93203 -13.83253 -13.68180 -13.40178 -13.22986 -13.14800 -12.96742 -12.92678 -12.90372 -12.72911 -12.53352 -12.48626 -12.40713 -12.16269 -11.97486 -11.76466 -11.70671 -11.64855 -11.49740 -11.35497 -10.57386 -9.95864 -9.74047 -9.18447 -8.15348 -6.28982 -0.30436 1.44331 1.46546 1.57588 1.97636 2.43950 2.53037 3.06117 3.16352 3.37561 3.58585 3.85529 3.99107 4.09222 4.14206 4.21974 4.27964 4.38177 4.42288 4.50273 4.59936 4.62556 4.66463 4.71057 4.77419 4.82834 4.85149 4.95126 5.02221 5.02678 5.06755 5.11582 5.15374 5.25053 5.25515 5.28918 5.38171 5.42869 5.47705 5.71836 5.80226 6.00580 6.11260 6.12216 6.19451 6.83248 7.41177 8.93153 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.016818 B = 0.004984 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.496471 B = 5616.639048 C = 6361.155629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.551 5.551 3 C 0.019 3.981 4 C 0.090 3.910 5 H 0.091 0.909 6 C -0.101 4.101 7 C -0.114 4.114 8 C 0.116 3.884 9 N -0.985 5.985 10 S 2.790 3.210 11 O -1.002 7.002 12 O -1.019 7.019 13 N -1.006 6.006 14 C 0.097 3.903 15 C 0.258 3.742 16 C -0.535 4.535 17 H 0.073 0.927 18 C 0.012 3.988 19 N -0.929 5.929 20 Si 0.961 3.039 21 H -0.258 1.258 22 H -0.285 1.285 23 H -0.279 1.279 24 C 0.129 3.871 25 C -0.169 4.169 26 H 0.025 0.975 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.030 0.970 32 H 0.034 0.966 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.015 0.985 42 H 0.018 0.982 43 H 0.265 0.735 44 H 0.101 0.899 45 H 0.075 0.925 46 H 0.089 0.911 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.522 14.874 -10.987 18.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.274 5.274 3 C -0.129 4.129 4 C -0.018 4.018 5 H 0.109 0.891 6 C -0.139 4.139 7 C -0.153 4.153 8 C -0.009 4.009 9 N -0.825 5.825 10 S 2.800 3.200 11 O -0.985 6.985 12 O -1.003 7.003 13 N -0.847 5.847 14 C -0.048 4.048 15 C 0.134 3.866 16 C -0.575 4.575 17 H 0.091 0.909 18 C -0.187 4.187 19 N -0.569 5.569 20 Si 0.786 3.214 21 H -0.182 1.182 22 H -0.211 1.211 23 H -0.205 1.205 24 C 0.003 3.997 25 C -0.209 4.209 26 H 0.044 0.956 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.033 0.967 42 H 0.036 0.964 43 H 0.074 0.926 44 H 0.119 0.881 45 H 0.093 0.907 46 H 0.107 0.893 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.841 14.419 -11.759 18.697 hybrid contribution 0.469 -0.242 1.463 1.556 sum 2.310 14.178 -10.296 17.673 Atomic orbital electron populations 1.22430 0.88102 1.01533 1.01008 1.62458 1.07805 1.14706 1.42424 1.22486 1.01271 0.88292 1.00815 1.20637 1.00050 0.93372 0.87752 0.89065 1.21034 0.98245 0.93788 1.00839 1.21637 0.98905 1.01523 0.93259 1.21761 0.96626 0.87444 0.95091 1.57231 1.43384 1.13891 1.68036 1.01477 0.73971 0.71771 0.72817 1.93510 1.67438 1.50463 1.87138 1.93500 1.81495 1.44778 1.80512 1.57628 1.82245 1.19286 1.25565 1.21477 1.01835 0.87347 0.94180 1.18779 0.94396 0.78621 0.94804 1.21777 0.91759 0.96633 1.47294 0.90907 1.25815 1.03222 0.94786 0.94878 1.70097 1.37899 1.00284 1.48621 0.85469 0.79686 0.78750 0.77510 1.18185 1.21113 1.20506 1.21246 1.01603 0.79136 0.97737 1.22002 1.01101 1.01269 0.96531 0.95608 0.90328 0.92669 0.90507 0.90789 0.95169 0.94701 0.90001 0.89539 0.89364 0.91615 0.91720 0.92836 0.90513 0.90426 0.96685 0.96395 0.92589 0.88106 0.90719 0.89264 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 8.54 127.69 1.09 1.46 16 2 N -0.55 -11.14 4.82 -935.15 -4.51 -15.66 16 3 C 0.02 0.30 9.37 127.69 1.20 1.50 16 4 C 0.09 1.92 1.65 42.94 0.07 1.99 16 5 H 0.09 1.70 7.19 -2.39 -0.02 1.68 16 6 C -0.10 -2.44 4.28 29.76 0.13 -2.31 16 7 C -0.11 -2.70 5.71 30.23 0.17 -2.52 16 8 C 0.12 3.76 6.24 86.49 0.54 4.30 16 9 N -0.99 -32.44 2.59 -512.38 -1.33 -33.76 16 10 S 2.79 113.50 5.93 -56.49 -0.33 113.16 16 11 O -1.00 -40.24 15.26 -128.00 -1.95 -42.19 16 12 O -1.02 -49.51 15.08 -128.00 -1.93 -51.44 16 13 N -1.01 -42.23 3.23 -543.23 -1.75 -43.98 16 14 C 0.10 3.26 10.32 127.77 1.32 4.58 16 15 C 0.26 13.11 5.44 85.63 0.47 13.57 16 16 C -0.54 -27.35 9.37 25.60 0.24 -27.11 16 17 H 0.07 3.51 7.82 -2.91 -0.02 3.49 16 18 C 0.01 0.66 5.45 84.65 0.46 1.12 16 19 N -0.93 -53.31 13.29 21.45 0.28 -53.02 16 20 Si 0.96 40.91 29.54 68.60 2.03 42.93 16 21 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 22 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 24 C 0.13 3.32 5.26 87.37 0.46 3.78 16 25 C -0.17 -3.96 4.13 29.39 0.12 -3.84 16 26 H 0.03 0.57 6.67 -2.39 -0.02 0.55 16 27 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.05 1.30 7.06 -2.38 -0.02 1.28 16 29 H 0.08 1.04 8.12 -2.39 -0.02 1.03 16 30 H 0.07 1.01 8.11 -2.39 -0.02 0.99 16 31 H 0.03 0.46 6.40 -2.38 -0.02 0.45 16 32 H 0.03 1.02 7.10 -2.39 -0.02 1.00 16 33 H 0.08 1.84 8.05 -2.39 -0.02 1.83 16 34 H 0.09 1.70 7.32 -2.39 -0.02 1.68 16 35 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.06 2.47 6.59 -2.39 -0.02 2.45 16 38 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 39 H 0.08 2.51 8.07 -2.38 -0.02 2.49 16 40 H 0.08 2.21 7.18 -2.39 -0.02 2.19 16 41 H 0.02 0.80 8.11 -2.39 -0.02 0.78 16 42 H 0.02 1.04 6.97 -2.38 -0.02 1.02 16 43 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 44 H 0.10 2.14 8.07 -2.39 -0.02 2.12 16 45 H 0.07 1.87 7.33 -2.39 -0.02 1.85 16 46 H 0.09 1.76 6.33 -2.38 -0.02 1.75 16 47 H 0.05 1.57 5.65 -2.39 -0.01 1.56 16 Total: -1.00 -66.26 365.83 -2.30 -68.56 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.94 Total: 18.88 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 6.27 Total: -3.48 kcal Atomic # 7 Polarization: -139.11 SS G_CDS: -7.31 Total: -146.42 kcal Atomic # 8 Polarization: -89.75 SS G_CDS: -3.88 Total: -93.63 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.93 kcal Atomic # 16 Polarization: 113.50 SS G_CDS: -0.33 Total: 113.16 kcal Total: -66.26 -2.30 -68.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428874747.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.328 kcal (2) G-P(sol) polarization free energy of solvation -66.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds