Wall clock time and date at job start Fri Apr 10 2020 18:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 111.00076 * 2 1 4 4 C 1.46900 * 110.99550 * 123.94794 * 2 1 3 5 5 H 1.09008 * 109.20360 * 190.16787 * 4 2 1 6 6 C 1.50119 * 109.21583 * 309.53544 * 4 2 1 7 7 C 1.52523 * 105.42254 * 217.98082 * 6 4 2 8 8 C 1.46235 * 114.27784 * 270.59747 * 7 6 4 9 9 N 1.50168 * 107.53735 * 58.40457 * 8 7 6 10 10 S 1.65599 * 120.53904 * 109.56649 * 9 8 7 11 11 O 1.42104 * 106.39986 * 203.54309 * 10 9 8 12 12 O 1.42092 * 106.40186 * 336.46103 * 10 9 8 13 13 N 1.65595 * 107.21693 * 90.00398 * 10 9 8 14 14 C 1.46501 * 119.99814 * 269.99493 * 13 10 9 15 15 C 1.46495 * 120.00476 * 90.00024 * 13 10 9 16 16 C 1.50701 * 109.47196 * 94.99487 * 15 13 10 17 17 H 1.07990 * 120.00192 * 0.02562 * 16 15 13 18 18 C 1.37884 * 119.99795 * 180.02562 * 16 15 13 19 19 N 1.31516 * 120.00103 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99815 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47444 * 89.99754 * 20 18 16 22 22 H 1.48503 * 109.46893 * 209.99996 * 20 18 16 23 23 H 1.48505 * 109.46820 * 329.99518 * 20 18 16 24 24 C 1.43437 * 118.92071 * 289.58779 * 9 8 7 25 25 C 1.54854 * 109.17068 * 70.83890 * 4 2 1 26 26 H 1.08997 * 109.47577 * 301.76959 * 1 2 3 27 27 H 1.09004 * 109.46864 * 61.76821 * 1 2 3 28 28 H 1.08996 * 109.47125 * 181.76301 * 1 2 3 29 29 H 1.08998 * 109.46964 * 183.95331 * 3 2 1 30 30 H 1.08998 * 109.47135 * 303.95143 * 3 2 1 31 31 H 1.09004 * 109.47445 * 63.94906 * 3 2 1 32 32 H 1.09006 * 110.24344 * 336.95566 * 6 4 2 33 33 H 1.09000 * 110.25103 * 98.86097 * 6 4 2 34 34 H 1.09009 * 108.51954 * 31.83752 * 7 6 4 35 35 H 1.08995 * 108.52379 * 149.35214 * 7 6 4 36 36 H 1.09001 * 109.84590 * 177.90901 * 8 7 6 37 37 H 1.09007 * 109.84377 * 298.82564 * 8 7 6 38 38 H 1.09001 * 109.47081 * 90.00022 * 14 13 10 39 39 H 1.08995 * 109.47132 * 210.00046 * 14 13 10 40 40 H 1.09001 * 109.47294 * 330.00540 * 14 13 10 41 41 H 1.09000 * 109.47622 * 214.99743 * 15 13 10 42 42 H 1.09007 * 109.46913 * 334.99992 * 15 13 10 43 43 H 0.96997 * 120.00186 * 180.02562 * 19 18 16 44 44 H 1.08996 * 108.15917 * 213.28303 * 24 9 8 45 45 H 1.08995 * 108.16151 * 330.06557 * 24 9 8 46 46 H 1.09000 * 109.35484 * 321.01537 * 25 4 2 47 47 H 1.08999 * 109.35576 * 80.60318 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9953 -0.7659 1.1377 5 1 3.0698 -0.5993 1.2157 6 6 1.3299 -0.2971 2.3991 7 6 2.4204 -0.3190 3.4652 8 6 2.5409 -1.5914 4.1760 9 7 2.8220 -2.6555 3.1544 10 16 4.3122 -3.3734 3.0754 11 8 4.4465 -3.8746 1.7524 12 8 5.2301 -2.4575 3.6564 13 7 4.2737 -4.6938 4.0740 14 6 4.6546 -4.5586 5.4821 15 6 3.8590 -5.9972 3.5494 16 6 5.0773 -6.7872 3.1460 17 1 6.0620 -6.3612 3.2686 18 6 4.9347 -8.0539 2.6204 19 7 3.7354 -8.5729 2.4716 20 14 6.4449 -9.0334 2.1211 21 1 6.9190 -9.8358 3.2772 22 1 6.0973 -9.9407 0.9980 23 1 7.5188 -8.1022 1.6911 24 6 1.7789 -3.0397 2.2478 25 6 1.7293 -2.2732 0.9027 26 1 -0.3634 0.5410 0.8736 27 1 -0.3633 0.4862 -0.9055 28 1 -0.3633 -1.0271 0.0316 29 1 3.0827 1.3431 -0.0708 30 1 1.5898 1.9163 -0.8524 31 1 1.7043 1.8724 0.9233 32 1 0.9485 0.7159 2.2703 33 1 0.5193 -0.9729 2.6716 34 1 3.3752 -0.0969 2.9885 35 1 2.2097 0.4652 4.1923 36 1 3.3616 -1.5393 4.8914 37 1 1.6096 -1.8138 4.6969 38 1 3.7735 -4.3125 6.0748 39 1 5.0793 -5.4981 5.8355 40 1 5.3942 -3.7644 5.5839 41 1 3.3116 -6.5413 4.3191 42 1 3.2165 -5.8516 2.6809 43 1 3.6351 -9.4642 2.1022 44 1 1.8924 -4.1015 2.0297 45 1 0.8225 -2.8988 2.7511 46 1 0.7457 -2.4002 0.4504 47 1 2.4883 -2.6735 0.2305 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428874749.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:21 Heat of formation + Delta-G solvation = -55.208553 kcal Electronic energy + Delta-G solvation = -27420.643606 eV Core-core repulsion = 23765.921993 eV Total energy + Delta-G solvation = -3654.721613 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.79856 -36.68954 -36.58407 -35.46031 -35.09251 -32.75083 -32.41738 -31.62721 -27.77296 -27.73443 -26.19882 -25.74296 -25.01446 -22.62853 -22.21681 -21.58276 -19.57166 -18.16206 -17.36113 -16.70863 -16.36231 -16.18462 -15.80347 -15.35648 -15.16879 -14.89064 -14.34513 -14.13723 -13.66151 -13.51969 -13.33358 -13.21417 -12.81340 -12.62670 -12.31708 -12.25119 -12.15557 -12.05596 -11.88475 -11.76867 -11.59738 -11.37359 -11.13607 -11.10783 -11.05780 -10.98894 -10.79590 -10.67014 -10.59402 -10.51645 -10.21242 -10.00592 -9.74012 -8.86630 -8.42766 -8.33856 -8.02919 -6.05510 -4.09356 1.21471 3.32543 3.39000 3.44435 3.47600 3.85806 4.07840 4.45796 4.55222 4.73541 4.89812 4.94702 5.02012 5.09176 5.16791 5.22788 5.25915 5.29325 5.29990 5.39089 5.54498 5.58725 5.63419 5.68289 5.72812 5.77064 5.79491 5.87632 5.92576 5.98692 6.02165 6.10443 6.18048 6.27883 6.32492 6.52558 6.55696 6.88662 6.98246 7.01092 7.23433 7.41723 7.62445 7.92180 8.21581 8.92966 9.55894 11.03050 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.019941 B = 0.004106 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.800525 B = 6818.174484 C = 7423.070456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.545 5.545 3 C 0.023 3.977 4 C 0.084 3.916 5 H 0.079 0.921 6 C -0.145 4.145 7 C -0.137 4.137 8 C 0.130 3.870 9 N -1.007 6.007 10 S 2.778 3.222 11 O -0.957 6.957 12 O -0.998 6.998 13 N -0.998 5.998 14 C 0.095 3.905 15 C 0.258 3.742 16 C -0.529 4.529 17 H 0.059 0.941 18 C 0.063 3.937 19 N -0.896 5.896 20 Si 0.896 3.104 21 H -0.280 1.280 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.128 3.872 25 C -0.131 4.131 26 H 0.027 0.973 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.026 0.974 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.038 0.962 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.034 0.966 42 H 0.037 0.963 43 H 0.263 0.737 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.077 0.923 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.740 17.469 2.206 19.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.268 5.268 3 C -0.125 4.125 4 C -0.024 4.024 5 H 0.098 0.902 6 C -0.184 4.184 7 C -0.176 4.176 8 C 0.005 3.995 9 N -0.845 5.845 10 S 2.787 3.213 11 O -0.941 6.941 12 O -0.982 6.982 13 N -0.840 5.840 14 C -0.051 4.051 15 C 0.136 3.864 16 C -0.568 4.568 17 H 0.078 0.922 18 C -0.139 4.139 19 N -0.535 5.535 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.210 1.210 23 H -0.197 1.197 24 C 0.001 3.999 25 C -0.171 4.171 26 H 0.046 0.954 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.056 0.944 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.073 0.927 44 H 0.096 0.904 45 H 0.085 0.915 46 H 0.095 0.905 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.940 17.352 1.183 19.119 hybrid contribution 0.133 -0.361 0.660 0.763 sum -7.807 16.991 1.843 18.790 Atomic orbital electron populations 1.22426 0.87854 1.02264 1.00311 1.62163 1.07795 1.13466 1.43395 1.22379 1.00848 0.89142 1.00145 1.21870 0.99218 0.93943 0.87389 0.90242 1.21721 0.98799 1.01311 0.96560 1.20770 0.99715 0.98113 0.99016 1.20703 1.02299 0.86297 0.90169 1.58449 1.31893 1.51558 1.42569 1.02130 0.72857 0.72512 0.73812 1.93630 1.84737 1.79814 1.35900 1.93500 1.60831 1.64205 1.79703 1.57696 1.81610 1.24243 1.20450 1.21334 0.98834 1.03189 0.81775 1.19046 0.95732 0.77450 0.94196 1.21494 0.93377 1.00089 1.41868 0.92235 1.24922 0.96198 0.97498 0.95321 1.69914 1.21513 1.16734 1.45330 0.86522 0.83084 0.79819 0.78210 1.20625 1.21013 1.19681 1.20679 0.90986 0.98795 0.89489 1.22784 1.03306 0.93185 0.97819 0.95441 0.91824 0.91024 0.91447 0.91642 0.95585 0.91545 0.90654 0.91424 0.91619 0.89273 0.90951 0.94368 0.90445 0.91719 0.94840 0.94524 0.92695 0.90396 0.91532 0.90450 0.90133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 8.86 60.06 0.53 0.71 16 2 N -0.55 -6.18 4.93 -243.74 -1.20 -7.38 16 3 C 0.02 0.22 9.34 60.06 0.56 0.78 16 4 C 0.08 1.03 1.96 -68.17 -0.13 0.90 16 5 H 0.08 1.12 6.66 -51.92 -0.35 0.78 16 6 C -0.15 -1.46 3.98 -28.41 -0.11 -1.58 16 7 C -0.14 -1.45 5.20 -30.19 -0.16 -1.61 16 8 C 0.13 1.51 5.93 -5.21 -0.03 1.48 16 9 N -1.01 -15.22 2.94 -116.10 -0.34 -15.57 16 10 S 2.78 55.78 6.01 -107.50 -0.65 55.13 16 11 O -0.96 -22.95 16.23 -57.17 -0.93 -23.88 16 12 O -1.00 -20.74 15.55 -57.17 -0.89 -21.63 16 13 N -1.00 -20.90 3.23 -123.05 -0.40 -21.29 16 14 C 0.10 1.65 10.68 59.85 0.64 2.29 16 15 C 0.26 6.46 5.08 -5.20 -0.03 6.44 16 16 C -0.53 -14.96 9.38 -34.44 -0.32 -15.28 16 17 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 18 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 19 N -0.90 -26.09 13.29 55.43 0.74 -25.35 16 20 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.13 1.82 4.76 -4.66 -0.02 1.79 16 25 C -0.13 -1.78 5.94 -24.75 -0.15 -1.92 16 26 H 0.03 0.23 6.50 -51.93 -0.34 -0.11 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.66 6.25 -51.93 -0.32 0.33 16 29 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.03 0.23 6.69 -51.93 -0.35 -0.12 16 32 H 0.07 0.61 5.35 -51.93 -0.28 0.34 16 33 H 0.07 0.73 6.29 -51.93 -0.33 0.40 16 34 H 0.07 0.83 6.93 -51.92 -0.36 0.47 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 1.05 7.30 -51.93 -0.38 0.67 16 37 H 0.07 0.69 8.13 -51.92 -0.42 0.27 16 38 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 40 H 0.06 1.06 7.02 -51.93 -0.36 0.69 16 41 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16 42 H 0.04 0.97 7.19 -51.93 -0.37 0.59 16 43 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.08 1.27 7.39 -51.93 -0.38 0.88 16 45 H 0.07 0.76 6.88 -51.93 -0.36 0.40 16 46 H 0.08 0.91 6.16 -51.93 -0.32 0.59 16 47 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 365.42 15.07 5.51 5.51 Total: -1.00 -33.11 365.42 -10.34 -43.45 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -7.84 Total: -1.61 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 0.68 Total: -4.31 kcal Atomic # 7 Polarization: -68.39 SS G_CDS: -1.20 Total: -69.59 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -1.82 Total: -45.51 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 55.78 SS G_CDS: -0.65 Total: 55.13 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.11 -10.34 -43.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428874749.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.760 kcal (2) G-P(sol) polarization free energy of solvation -33.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds