Wall clock time and date at job start Fri Apr 10 2020 18:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46903 * 109.47051 * 2 1 4 4 C 1.43912 * 110.99993 * 175.23555 * 3 2 1 5 5 C 1.52479 * 105.41502 * 136.57513 * 4 3 2 6 6 C 1.46647 * 114.11608 * 90.35401 * 5 4 3 7 7 N 1.50231 * 106.98306 * 301.86794 * 6 5 4 8 8 S 1.65607 * 120.54674 * 248.49207 * 7 6 5 9 9 O 1.42101 * 106.39930 * 215.22112 * 8 7 6 10 10 O 1.42095 * 106.40443 * 348.14156 * 8 7 6 11 11 N 1.65596 * 107.21870 * 101.68213 * 8 7 6 12 12 C 1.46508 * 120.00247 * 93.63700 * 11 8 7 13 13 C 1.46498 * 120.00195 * 273.64092 * 11 8 7 14 14 C 1.50699 * 109.47424 * 102.77824 * 13 11 8 15 15 H 1.08000 * 119.99767 * 0.09117 * 14 13 11 16 16 C 1.37878 * 120.00215 * 180.09870 * 14 13 11 17 17 N 1.31521 * 119.99755 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00369 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47171 * 59.99453 * 18 16 14 20 20 H 1.48500 * 109.47455 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46819 * 299.99906 * 18 16 14 22 22 C 1.43656 * 118.90364 * 68.51471 * 7 6 5 23 23 H 1.08999 * 107.97928 * 32.47083 * 22 7 6 24 24 C 1.52994 * 108.14641 * 149.11504 * 22 7 6 25 25 C 1.48824 * 110.99800 * 49.92551 * 3 2 1 26 26 H 1.08998 * 109.46776 * 176.16007 * 1 2 3 27 27 H 1.09000 * 109.47365 * 296.16027 * 1 2 3 28 28 H 1.09001 * 109.46653 * 56.15866 * 1 2 3 29 29 H 1.08995 * 109.47123 * 240.00194 * 2 1 3 30 30 H 1.09005 * 109.47300 * 119.99462 * 2 1 3 31 31 H 1.08995 * 110.25144 * 17.60283 * 4 3 2 32 32 H 1.08998 * 110.37417 * 255.60332 * 4 3 2 33 33 H 1.09000 * 108.55232 * 329.15520 * 5 4 3 34 34 H 1.08996 * 108.55499 * 211.56206 * 5 4 3 35 35 H 1.09002 * 109.94834 * 61.22953 * 6 5 4 36 36 H 1.08993 * 109.95249 * 182.49247 * 6 5 4 37 37 H 1.08998 * 109.47054 * 89.99966 * 12 11 8 38 38 H 1.09000 * 109.47168 * 210.00163 * 12 11 8 39 39 H 1.08999 * 109.46793 * 330.00532 * 12 11 8 40 40 H 1.09000 * 109.47135 * 222.77895 * 13 11 8 41 41 H 1.09010 * 109.46682 * 342.77646 * 13 11 8 42 42 H 0.96996 * 119.99568 * 180.02562 * 17 16 14 43 43 H 1.08996 * 109.47727 * 193.12481 * 24 22 7 44 44 H 1.09005 * 109.47217 * 313.12538 * 24 22 7 45 45 H 1.09001 * 109.46978 * 73.12278 * 24 22 7 46 46 H 1.09000 * 109.23942 * 284.03345 * 25 3 2 47 47 H 1.08996 * 109.23491 * 43.45726 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4539 1.4250 0.1116 5 6 3.9097 2.4750 -0.8957 6 6 3.9971 3.8326 -0.3480 7 7 2.6336 4.1827 0.1766 8 16 1.7194 5.3469 -0.5660 9 8 1.0067 6.0158 0.4654 10 8 2.5830 6.0165 -1.4742 11 7 0.5861 4.5666 -1.4874 12 6 -0.7433 4.2920 -0.9363 13 6 0.9128 4.1507 -2.8535 14 6 1.1864 2.6689 -2.8758 15 1 1.1218 2.0942 -1.9637 16 6 1.5194 2.0470 -4.0604 17 7 1.5977 2.7469 -5.1712 18 14 1.8592 0.2104 -4.0879 19 1 0.6541 -0.5230 -3.6240 20 1 2.1920 -0.2108 -5.4725 21 1 3.0011 -0.0951 -3.1890 22 6 2.1361 3.4912 1.3334 23 1 2.9854 3.2518 1.9733 24 6 1.2194 4.4455 2.1013 25 6 1.3541 2.1860 1.0632 26 1 -0.3633 -1.0254 -0.0688 27 1 -0.3634 0.4531 0.9224 28 1 -0.3633 0.5723 -0.8536 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8901 31 1 3.8790 0.4530 -0.1383 32 1 3.7481 1.7168 1.1197 33 1 3.2088 2.4822 -1.7304 34 1 4.8913 2.1897 -1.2740 35 1 4.7258 3.8605 0.4622 36 1 4.2848 4.5323 -1.1326 37 1 -1.4070 5.1285 -1.1548 38 1 -1.1430 3.3837 -1.3871 39 1 -0.6689 4.1597 0.1431 40 1 0.0738 4.3752 -3.5121 41 1 1.7972 4.6887 -3.1954 42 1 1.8316 2.3093 -6.0046 43 1 1.0161 4.0365 3.0910 44 1 1.7069 5.4153 2.2021 45 1 0.2821 4.5648 1.5579 46 1 0.3413 2.4334 0.7454 47 1 1.3093 1.5986 1.9802 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601440271.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:41 Heat of formation + Delta-G solvation = -35.189833 kcal Electronic energy + Delta-G solvation = -29475.944623 eV Core-core repulsion = 25822.091087 eV Total energy + Delta-G solvation = -3653.853536 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.25035 -36.91239 -35.62725 -35.32883 -35.08445 -33.31627 -32.26603 -30.68589 -28.06751 -27.58433 -26.40784 -24.99216 -24.30730 -22.24763 -21.83027 -20.90371 -19.91101 -17.99688 -16.94752 -16.50133 -16.34451 -16.08175 -15.47437 -15.31980 -14.92964 -14.29844 -14.12356 -13.50357 -13.48436 -13.22102 -13.10806 -12.98465 -12.82143 -12.54683 -12.15098 -12.03235 -11.98441 -11.85927 -11.62295 -11.44277 -11.26756 -11.14798 -11.02150 -10.97427 -10.64816 -10.59238 -10.47898 -10.41965 -10.30332 -10.11437 -9.83362 -9.82164 -9.42144 -8.57872 -8.32052 -7.85714 -7.63622 -5.92996 -3.92987 1.40491 3.33921 3.39855 3.40717 3.52789 4.21892 4.26031 4.51231 4.83658 5.07323 5.15919 5.21464 5.33929 5.39869 5.44766 5.46827 5.55884 5.62452 5.70825 5.71960 5.75343 5.83108 5.88481 5.96422 6.02392 6.08028 6.18726 6.21559 6.27152 6.37601 6.41401 6.49366 6.53965 6.61719 6.72436 6.79755 7.06312 7.29212 7.46993 7.51314 7.63622 7.73614 7.79985 8.11670 8.40715 9.26127 9.70478 11.16241 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.012799 B = 0.008595 C = 0.006898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.092195 B = 3257.101121 C = 4058.436829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.054 3.946 3 N -0.512 5.512 4 C 0.068 3.932 5 C -0.166 4.166 6 C 0.137 3.863 7 N -0.986 5.986 8 S 2.784 3.216 9 O -0.999 6.999 10 O -0.987 6.987 11 N -0.989 5.989 12 C 0.107 3.893 13 C 0.245 3.755 14 C -0.526 4.526 15 H 0.105 0.895 16 C 0.060 3.940 17 N -0.901 5.901 18 Si 0.888 3.112 19 H -0.279 1.279 20 H -0.297 1.297 21 H -0.275 1.275 22 C 0.154 3.846 23 H 0.070 0.930 24 C -0.177 4.177 25 C 0.041 3.959 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.021 0.979 31 H 0.060 0.940 32 H 0.039 0.961 33 H 0.129 0.871 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.039 0.961 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.029 0.971 41 H 0.045 0.955 42 H 0.259 0.741 43 H 0.052 0.948 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.740 -3.107 13.430 13.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.074 4.074 3 N -0.236 5.236 4 C -0.061 4.061 5 C -0.204 4.204 6 C 0.014 3.986 7 N -0.824 5.824 8 S 2.794 3.206 9 O -0.983 6.983 10 O -0.971 6.971 11 N -0.830 5.830 12 C -0.039 4.039 13 C 0.123 3.877 14 C -0.565 4.565 15 H 0.123 0.877 16 C -0.141 4.141 17 N -0.541 5.541 18 Si 0.717 3.283 19 H -0.205 1.205 20 H -0.223 1.223 21 H -0.200 1.200 22 C 0.045 3.955 23 H 0.088 0.912 24 C -0.236 4.236 25 C -0.089 4.089 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.147 0.853 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.114 0.886 37 H 0.057 0.943 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.047 0.953 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.101 0.899 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.783 -1.962 12.856 13.028 hybrid contribution 0.385 -2.139 0.459 2.221 sum 1.167 -4.100 13.315 13.981 Atomic orbital electron populations 1.21885 0.95161 1.01404 1.02760 1.22156 0.96034 0.89520 0.99691 1.61869 1.05194 1.10440 1.46116 1.21470 0.88153 0.98779 0.97685 1.21212 1.02961 0.93825 1.02443 1.20832 0.81687 0.97666 0.98448 1.58100 1.27491 1.55956 1.40804 1.01828 0.72735 0.73839 0.72203 1.93632 1.73754 1.74074 1.56833 1.93533 1.66744 1.72479 1.64344 1.57513 1.22951 1.75885 1.26694 1.21257 0.84486 1.01199 0.96990 1.19186 0.97176 0.96028 0.75300 1.22141 1.44986 0.93484 0.95893 0.87680 1.24943 0.96074 0.97448 0.95673 1.69965 1.49317 1.35662 0.99120 0.86752 0.78783 0.86509 0.76279 1.20488 1.22334 1.20020 1.20384 0.96794 0.91967 0.86368 0.91231 1.22866 1.01461 0.99517 0.99755 1.23379 0.99332 0.93725 0.92431 0.93064 0.93075 0.90495 0.91110 0.96108 0.92159 0.94291 0.85304 0.92698 0.92218 0.88597 0.94281 0.90784 0.92944 0.95295 0.93678 0.93125 0.92927 0.89940 0.90192 0.90207 0.94343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.28 37.16 0.34 -1.75 16 2 C 0.05 0.77 5.49 -3.82 -0.02 0.75 16 3 N -0.51 -7.88 2.18 -234.76 -0.51 -8.39 16 4 C 0.07 0.98 5.49 -5.68 -0.03 0.95 16 5 C -0.17 -2.74 5.32 -30.03 -0.16 -2.90 16 6 C 0.14 2.17 6.18 -4.99 -0.03 2.14 16 7 N -0.99 -16.32 3.01 -108.73 -0.33 -16.65 16 8 S 2.78 54.80 5.90 -107.50 -0.63 54.16 16 9 O -1.00 -19.42 12.00 -57.17 -0.69 -20.11 16 10 O -0.99 -22.80 15.15 -57.17 -0.87 -23.66 16 11 N -0.99 -20.04 3.25 -123.04 -0.40 -20.44 16 12 C 0.11 1.83 9.89 59.85 0.59 2.42 16 13 C 0.25 5.96 5.47 -5.20 -0.03 5.93 16 14 C -0.53 -12.86 6.98 -34.44 -0.24 -13.10 16 15 H 0.11 2.38 5.47 -52.49 -0.29 2.09 16 16 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 17 N -0.90 -25.57 13.29 55.43 0.74 -24.84 16 18 Si 0.89 20.51 29.44 -169.99 -5.00 15.51 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.30 -7.11 7.11 56.52 0.40 -6.70 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 C 0.15 2.15 2.30 -68.63 -0.16 1.99 16 23 H 0.07 0.87 6.87 -51.93 -0.36 0.51 16 24 C -0.18 -2.44 7.38 37.15 0.27 -2.16 16 25 C 0.04 0.55 4.11 -1.95 -0.01 0.55 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.61 6.85 -51.93 -0.36 0.26 16 28 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.07 1.14 8.04 -51.93 -0.42 0.72 16 30 H 0.02 0.26 8.13 -51.93 -0.42 -0.16 16 31 H 0.06 0.85 7.62 -51.93 -0.40 0.45 16 32 H 0.04 0.50 6.14 -51.93 -0.32 0.18 16 33 H 0.13 2.67 5.11 -51.93 -0.27 2.41 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.10 1.67 6.81 -51.93 -0.35 1.31 16 37 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.07 1.27 7.97 -51.93 -0.41 0.85 16 39 H 0.05 0.79 4.46 -51.93 -0.23 0.55 16 40 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.05 1.23 6.89 -51.92 -0.36 0.87 16 42 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.08 1.25 6.67 -51.93 -0.35 0.90 16 45 H 0.08 1.19 4.05 -51.93 -0.21 0.98 16 46 H 0.08 1.14 5.63 -51.93 -0.29 0.84 16 47 H 0.04 0.46 7.94 -51.93 -0.41 0.05 16 LS Contribution 348.84 15.07 5.26 5.26 Total: -1.00 -29.61 348.84 -9.53 -39.14 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -7.53 Total: 3.72 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 0.44 Total: -3.71 kcal Atomic # 7 Polarization: -69.81 SS G_CDS: -0.50 Total: -70.32 kcal Atomic # 8 Polarization: -42.22 SS G_CDS: -1.55 Total: -43.77 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.00 Total: 15.51 kcal Atomic # 16 Polarization: 54.80 SS G_CDS: -0.63 Total: 54.16 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.61 -9.53 -39.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601440271.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.954 kcal (2) G-P(sol) polarization free energy of solvation -29.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds