Wall clock time and date at job start Fri Apr 10 2020 18:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46903 * 109.47051 * 2 1 4 4 C 1.43912 * 110.99993 * 175.23555 * 3 2 1 5 5 C 1.52479 * 105.41502 * 136.57513 * 4 3 2 6 6 C 1.46647 * 114.11608 * 90.35401 * 5 4 3 7 7 N 1.50231 * 106.98306 * 301.86794 * 6 5 4 8 8 S 1.65607 * 120.54674 * 248.49207 * 7 6 5 9 9 O 1.42101 * 106.39930 * 215.22112 * 8 7 6 10 10 O 1.42095 * 106.40443 * 348.14156 * 8 7 6 11 11 N 1.65596 * 107.21870 * 101.68213 * 8 7 6 12 12 C 1.46508 * 120.00247 * 93.63700 * 11 8 7 13 13 C 1.46498 * 120.00195 * 273.64092 * 11 8 7 14 14 C 1.50699 * 109.47424 * 102.77824 * 13 11 8 15 15 H 1.08000 * 119.99767 * 0.09117 * 14 13 11 16 16 C 1.37878 * 120.00215 * 180.09870 * 14 13 11 17 17 N 1.31521 * 119.99755 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00369 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47171 * 59.99453 * 18 16 14 20 20 H 1.48500 * 109.47455 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46819 * 299.99906 * 18 16 14 22 22 C 1.43656 * 118.90364 * 68.51471 * 7 6 5 23 23 H 1.08999 * 107.97928 * 32.47083 * 22 7 6 24 24 C 1.52994 * 108.14641 * 149.11504 * 22 7 6 25 25 C 1.48824 * 110.99800 * 49.92551 * 3 2 1 26 26 H 1.08998 * 109.46776 * 176.16007 * 1 2 3 27 27 H 1.09000 * 109.47365 * 296.16027 * 1 2 3 28 28 H 1.09001 * 109.46653 * 56.15866 * 1 2 3 29 29 H 1.08995 * 109.47123 * 240.00194 * 2 1 3 30 30 H 1.09005 * 109.47300 * 119.99462 * 2 1 3 31 31 H 1.08995 * 110.25144 * 17.60283 * 4 3 2 32 32 H 1.08998 * 110.37417 * 255.60332 * 4 3 2 33 33 H 1.09000 * 108.55232 * 329.15520 * 5 4 3 34 34 H 1.08996 * 108.55499 * 211.56206 * 5 4 3 35 35 H 1.09002 * 109.94834 * 61.22953 * 6 5 4 36 36 H 1.08993 * 109.95249 * 182.49247 * 6 5 4 37 37 H 1.08998 * 109.47054 * 89.99966 * 12 11 8 38 38 H 1.09000 * 109.47168 * 210.00163 * 12 11 8 39 39 H 1.08999 * 109.46793 * 330.00532 * 12 11 8 40 40 H 1.09000 * 109.47135 * 222.77895 * 13 11 8 41 41 H 1.09010 * 109.46682 * 342.77646 * 13 11 8 42 42 H 0.96996 * 119.99568 * 180.02562 * 17 16 14 43 43 H 1.08996 * 109.47727 * 193.12481 * 24 22 7 44 44 H 1.09005 * 109.47217 * 313.12538 * 24 22 7 45 45 H 1.09001 * 109.46978 * 73.12278 * 24 22 7 46 46 H 1.09000 * 109.23942 * 284.03345 * 25 3 2 47 47 H 1.08996 * 109.23491 * 43.45726 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4539 1.4250 0.1116 5 6 3.9097 2.4750 -0.8957 6 6 3.9971 3.8326 -0.3480 7 7 2.6336 4.1827 0.1766 8 16 1.7194 5.3469 -0.5660 9 8 1.0067 6.0158 0.4654 10 8 2.5830 6.0165 -1.4742 11 7 0.5861 4.5666 -1.4874 12 6 -0.7433 4.2920 -0.9363 13 6 0.9128 4.1507 -2.8535 14 6 1.1864 2.6689 -2.8758 15 1 1.1218 2.0942 -1.9637 16 6 1.5194 2.0470 -4.0604 17 7 1.5977 2.7469 -5.1712 18 14 1.8592 0.2104 -4.0879 19 1 0.6541 -0.5230 -3.6240 20 1 2.1920 -0.2108 -5.4725 21 1 3.0011 -0.0951 -3.1890 22 6 2.1361 3.4912 1.3334 23 1 2.9854 3.2518 1.9733 24 6 1.2194 4.4455 2.1013 25 6 1.3541 2.1860 1.0632 26 1 -0.3633 -1.0254 -0.0688 27 1 -0.3634 0.4531 0.9224 28 1 -0.3633 0.5723 -0.8536 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8901 31 1 3.8790 0.4530 -0.1383 32 1 3.7481 1.7168 1.1197 33 1 3.2088 2.4822 -1.7304 34 1 4.8913 2.1897 -1.2740 35 1 4.7258 3.8605 0.4622 36 1 4.2848 4.5323 -1.1326 37 1 -1.4070 5.1285 -1.1548 38 1 -1.1430 3.3837 -1.3871 39 1 -0.6689 4.1597 0.1431 40 1 0.0738 4.3752 -3.5121 41 1 1.7972 4.6887 -3.1954 42 1 1.8316 2.3093 -6.0046 43 1 1.0161 4.0365 3.0910 44 1 1.7069 5.4153 2.2021 45 1 0.2821 4.5648 1.5579 46 1 0.3413 2.4334 0.7454 47 1 1.3093 1.5986 1.9802 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601440271.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:40 Heat of formation + Delta-G solvation = -55.061891 kcal Electronic energy + Delta-G solvation = -29476.806340 eV Core-core repulsion = 25822.091087 eV Total energy + Delta-G solvation = -3654.715253 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.40780 -38.48687 -37.04567 -36.94877 -36.60957 -34.56590 -34.17870 -31.80959 -29.45344 -29.23373 -27.50842 -26.66316 -25.45121 -24.02502 -23.04930 -22.16353 -21.07512 -19.52061 -18.51146 -18.30541 -17.70463 -17.58243 -16.73093 -16.60088 -16.43373 -15.91333 -15.35194 -15.06955 -14.83408 -14.69356 -14.38641 -14.22110 -14.10089 -13.86170 -13.76095 -13.69333 -13.23388 -13.18384 -13.00545 -12.85997 -12.80806 -12.67470 -12.55452 -12.39698 -12.25469 -12.07944 -11.84366 -11.71386 -11.64393 -11.49628 -11.40142 -11.17992 -11.04038 -10.38358 -9.85223 -9.53287 -8.75607 -7.96697 -6.00573 -0.14093 1.48320 1.49673 1.56336 2.06079 2.56481 2.69314 3.17381 3.36229 3.53909 3.69837 4.04650 4.12714 4.21350 4.24237 4.33512 4.38214 4.51375 4.56934 4.58657 4.68107 4.72513 4.75082 4.79177 4.89150 4.94061 4.97249 5.01270 5.07085 5.16075 5.20827 5.27464 5.34203 5.36203 5.44284 5.48683 5.65102 5.68005 5.84258 5.94378 6.05403 6.15476 6.40462 6.43147 6.62324 7.27446 7.66361 9.13218 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.012799 B = 0.008595 C = 0.006898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.092195 B = 3257.101121 C = 4058.436829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 N -0.541 5.541 4 C 0.074 3.926 5 C -0.165 4.165 6 C 0.136 3.864 7 N -0.981 5.981 8 S 2.791 3.209 9 O -0.997 6.997 10 O -1.028 7.028 11 N -0.995 5.995 12 C 0.103 3.897 13 C 0.261 3.739 14 C -0.505 4.505 15 H 0.126 0.874 16 C 0.006 3.994 17 N -0.946 5.946 18 Si 0.944 3.056 19 H -0.269 1.269 20 H -0.310 1.310 21 H -0.260 1.260 22 C 0.147 3.853 23 H 0.099 0.901 24 C -0.176 4.176 25 C 0.042 3.958 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.003 0.997 41 H 0.009 0.991 42 H 0.254 0.746 43 H 0.086 0.914 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.071 0.929 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.943 -5.089 17.094 17.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.073 4.073 3 N -0.266 5.266 4 C -0.054 4.054 5 C -0.204 4.204 6 C 0.013 3.987 7 N -0.820 5.820 8 S 2.802 3.198 9 O -0.981 6.981 10 O -1.013 7.013 11 N -0.836 5.836 12 C -0.043 4.043 13 C 0.137 3.863 14 C -0.544 4.544 15 H 0.144 0.856 16 C -0.190 4.190 17 N -0.589 5.589 18 Si 0.772 3.228 19 H -0.194 1.194 20 H -0.238 1.238 21 H -0.184 1.184 22 C 0.039 3.961 23 H 0.117 0.883 24 C -0.234 4.234 25 C -0.086 4.086 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.119 0.881 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.021 0.979 41 H 0.027 0.973 42 H 0.063 0.937 43 H 0.104 0.896 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.089 0.911 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.957 -3.946 16.562 17.053 hybrid contribution 0.317 -1.467 -0.588 1.612 sum 1.274 -5.413 15.975 16.915 Atomic orbital electron populations 1.21844 0.94804 1.01849 1.02305 1.22120 0.96265 0.89026 0.99845 1.61718 1.05875 1.11351 1.47629 1.21416 0.87700 0.98101 0.98187 1.21164 1.02311 0.95065 1.01855 1.20922 0.81966 0.96594 0.99244 1.57886 1.27251 1.55778 1.41112 1.01494 0.72381 0.74141 0.71827 1.93650 1.73863 1.74549 1.55998 1.93478 1.67845 1.74034 1.65918 1.57425 1.24759 1.75978 1.25392 1.21440 0.83052 1.01408 0.98397 1.18707 0.94583 0.95883 0.77103 1.22472 1.42291 0.93388 0.96226 0.85604 1.25673 0.96568 1.01284 0.95503 1.70130 1.51762 1.37332 0.99694 0.85834 0.79393 0.82015 0.75602 1.19369 1.23789 1.18441 1.20683 0.98044 0.91975 0.85377 0.88289 1.22795 1.00379 0.98923 1.01338 1.23385 0.98513 0.93513 0.93226 0.91836 0.91224 0.93573 0.93238 0.93563 0.91721 0.91641 0.89726 0.91838 0.88128 0.91240 0.93527 0.91055 0.90316 0.97945 0.97301 0.93739 0.89565 0.91535 0.91614 0.91089 0.91289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.28 71.98 0.67 -2.95 16 2 C 0.05 1.38 5.49 86.30 0.47 1.86 16 3 N -0.54 -14.86 2.18 -896.64 -1.95 -16.81 16 4 C 0.07 1.88 5.49 86.69 0.48 2.35 16 5 C -0.16 -5.15 5.32 28.46 0.15 -5.00 16 6 C 0.14 4.07 6.18 83.68 0.52 4.58 16 7 N -0.98 -30.60 3.01 -497.92 -1.50 -32.10 16 8 S 2.79 109.80 5.90 -56.49 -0.33 109.46 16 9 O -1.00 -37.77 12.00 -128.00 -1.54 -39.31 16 10 O -1.03 -49.27 15.15 -128.00 -1.94 -51.21 16 11 N -0.99 -40.88 3.25 -543.20 -1.77 -42.65 16 12 C 0.10 3.44 9.89 127.77 1.26 4.70 16 13 C 0.26 13.27 5.47 85.63 0.47 13.74 16 14 C -0.50 -25.19 6.98 25.60 0.18 -25.01 16 15 H 0.13 5.66 5.47 -2.91 -0.02 5.65 16 16 C 0.01 0.33 5.46 84.65 0.46 0.79 16 17 N -0.95 -56.11 13.29 21.45 0.28 -55.83 16 18 Si 0.94 42.67 29.44 68.60 2.02 44.69 16 19 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 20 H -0.31 -14.67 7.11 99.48 0.71 -13.97 16 21 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 22 C 0.15 3.52 2.30 46.04 0.11 3.63 16 23 H 0.10 1.88 6.87 -2.39 -0.02 1.87 16 24 C -0.18 -4.17 7.38 71.98 0.53 -3.64 16 25 C 0.04 0.98 4.11 86.45 0.36 1.33 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.07 1.39 6.85 -2.39 -0.02 1.37 16 28 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.05 1.45 8.04 -2.39 -0.02 1.43 16 30 H 0.05 0.94 8.13 -2.38 -0.02 0.92 16 31 H 0.06 1.58 7.62 -2.39 -0.02 1.56 16 32 H 0.07 1.31 6.14 -2.39 -0.01 1.30 16 33 H 0.08 3.48 5.11 -2.39 -0.01 3.47 16 34 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.07 2.45 6.81 -2.39 -0.02 2.44 16 37 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.07 2.41 7.97 -2.39 -0.02 2.40 16 39 H 0.08 2.22 4.46 -2.39 -0.01 2.21 16 40 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 41 H 0.01 0.52 6.89 -2.38 -0.02 0.50 16 42 H 0.25 14.61 8.31 -92.71 -0.77 13.83 16 43 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.07 1.82 6.67 -2.38 -0.02 1.80 16 45 H 0.07 1.75 4.05 -2.39 -0.01 1.74 16 46 H 0.07 1.77 5.63 -2.39 -0.01 1.75 16 47 H 0.07 1.22 7.94 -2.39 -0.02 1.20 16 Total: -1.00 -67.21 348.84 -0.11 -67.32 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.96 Total: 20.05 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: 5.65 Total: -3.61 kcal Atomic # 7 Polarization: -142.45 SS G_CDS: -4.93 Total: -147.38 kcal Atomic # 8 Polarization: -87.05 SS G_CDS: -3.47 Total: -90.52 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.02 Total: 44.69 kcal Atomic # 16 Polarization: 109.80 SS G_CDS: -0.33 Total: 109.46 kcal Total: -67.21 -0.11 -67.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601440271.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.256 kcal (2) G-P(sol) polarization free energy of solvation -67.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds