Wall clock time and date at job start Fri Apr 10 2020 18:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46891 * 111.00120 * 2 1 4 4 C 1.46898 * 110.99814 * 123.96005 * 2 1 3 5 5 C 1.53006 * 109.47006 * 169.99400 * 4 2 1 6 6 C 1.52997 * 109.47127 * 179.97438 * 5 4 2 7 7 S 1.81399 * 109.47147 * 180.02562 * 6 5 4 8 8 O 1.42104 * 110.53977 * 291.62707 * 7 6 5 9 9 O 1.42095 * 110.54514 * 68.37328 * 7 6 5 10 10 N 1.65598 * 104.45041 * 180.02562 * 7 6 5 11 11 C 1.47084 * 120.87645 * 269.72140 * 10 7 6 12 12 C 1.53693 * 108.27477 * 128.75641 * 11 10 7 13 13 N 1.46895 * 109.26154 * 54.07940 * 12 11 10 14 14 C 1.46903 * 111.00495 * 172.60765 * 13 12 11 15 15 C 1.50703 * 109.47086 * 294.30323 * 14 13 12 16 16 H 1.08010 * 119.99448 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00099 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99773 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 119.99818 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47154 * 89.99880 * 19 17 15 21 21 H 1.48495 * 109.46885 * 210.00002 * 19 17 15 22 22 H 1.48500 * 109.47234 * 329.99903 * 19 17 15 23 23 C 1.46900 * 111.26753 * 296.75865 * 13 12 11 24 24 C 1.47078 * 120.88431 * 89.99967 * 10 7 6 25 25 H 1.09001 * 109.47083 * 296.04480 * 1 2 3 26 26 H 1.09009 * 109.47251 * 56.03829 * 1 2 3 27 27 H 1.08996 * 109.47789 * 176.04251 * 1 2 3 28 28 H 1.09008 * 109.47294 * 183.95307 * 3 2 1 29 29 H 1.08994 * 109.47718 * 303.95889 * 3 2 1 30 30 H 1.09007 * 109.47181 * 63.96365 * 3 2 1 31 31 H 1.09001 * 109.47062 * 49.99654 * 4 2 1 32 32 H 1.08993 * 109.47084 * 289.99101 * 4 2 1 33 33 H 1.09001 * 109.46801 * 300.00064 * 5 4 2 34 34 H 1.09001 * 109.46998 * 59.99660 * 5 4 2 35 35 H 1.08996 * 109.46952 * 300.00302 * 6 5 4 36 36 H 1.09001 * 109.46832 * 60.00321 * 6 5 4 37 37 H 1.08997 * 109.62553 * 248.52196 * 11 10 7 38 38 H 1.08999 * 109.63037 * 9.10206 * 11 10 7 39 39 H 1.09004 * 109.64959 * 294.07602 * 12 11 10 40 40 H 1.09005 * 109.41962 * 173.94663 * 12 11 10 41 41 H 1.08999 * 109.46811 * 54.29770 * 14 13 12 42 42 H 1.08997 * 109.47185 * 174.30635 * 14 13 12 43 43 H 0.97000 * 119.99606 * 179.97438 * 18 17 15 44 44 H 1.08995 * 109.49254 * 303.14017 * 23 13 12 45 45 H 1.09000 * 109.51385 * 183.07217 * 23 13 12 46 46 H 1.08997 * 109.62469 * 350.89369 * 24 10 7 47 47 H 1.08999 * 109.62615 * 111.47542 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 3.5044 -0.9556 0.9702 6 6 4.0528 -1.7530 2.1552 7 16 5.8420 -1.9770 1.9572 8 8 6.1182 -2.8425 0.8646 9 8 6.5185 -0.7353 2.0973 10 7 6.2999 -2.8450 3.2910 11 6 6.7187 -2.1656 4.5265 12 6 5.9175 -2.7572 5.6971 13 7 6.0794 -4.2172 5.7063 14 6 5.4751 -4.8064 6.9087 15 6 6.2320 -4.3468 8.1281 16 1 7.0771 -3.6829 8.0205 17 6 5.8449 -4.7728 9.3809 18 7 6.5052 -4.3712 10.4451 19 14 4.3828 -5.9204 9.5668 20 1 4.8481 -7.3292 9.5038 21 1 3.7239 -5.6747 10.8747 22 1 3.4141 -5.6696 8.4696 23 6 5.5251 -4.8224 4.4879 24 6 6.3044 -4.3156 3.2697 25 1 -0.3633 0.4512 0.9233 26 1 -0.3634 0.5741 -0.8524 27 1 -0.3634 -1.0251 -0.0709 28 1 3.0828 1.3431 -0.0709 29 1 1.5898 1.9163 -0.8523 30 1 1.7045 1.8722 0.9234 31 1 1.5088 -1.7408 1.1754 32 1 1.7976 -0.2249 2.0627 33 1 3.7022 -1.4968 0.0449 34 1 3.9910 0.0191 0.9321 35 1 3.8549 -1.2114 3.0802 36 1 3.5663 -2.7276 2.1936 37 1 7.7842 -2.3267 4.6897 38 1 6.5152 -1.0980 4.4443 39 1 4.8624 -2.5090 5.5817 40 1 6.2882 -2.3443 6.6354 41 1 4.4352 -4.4890 6.9855 42 1 5.5193 -5.8935 6.8421 43 1 6.2326 -4.6707 11.3265 44 1 4.4755 -4.5455 4.3893 45 1 5.6108 -5.9073 4.5489 46 1 5.8269 -4.6700 2.3562 47 1 7.3310 -4.6793 3.3144 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601536062.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:43 Heat of formation + Delta-G solvation = -52.566371 kcal Electronic energy + Delta-G solvation = -25833.009140 eV Core-core repulsion = 22178.402100 eV Total energy + Delta-G solvation = -3654.607040 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.50375 -38.19912 -37.20972 -36.00742 -34.53839 -33.88252 -32.35306 -30.85712 -28.43641 -28.02979 -27.64192 -25.24045 -23.50742 -23.43663 -21.54216 -21.26285 -20.10946 -18.72298 -17.68549 -16.87712 -16.73754 -16.55025 -15.85554 -15.49180 -15.16465 -14.83196 -14.73040 -14.59735 -14.33058 -14.28065 -13.75310 -13.49460 -13.03717 -12.85650 -12.64752 -12.60469 -12.48236 -12.31919 -12.20903 -12.15631 -12.06037 -11.95991 -11.89016 -11.54203 -11.17785 -11.17175 -10.96930 -10.87218 -10.80769 -10.58444 -10.20654 -9.96496 -9.39319 -8.89800 -8.81030 -8.63976 -7.49138 -6.12182 -4.10260 0.15365 2.57059 3.22362 3.30242 3.30648 3.43896 3.79175 4.00298 4.34854 4.36152 4.42294 4.56258 4.57347 4.75269 4.79142 4.88026 4.97486 5.10975 5.15635 5.18878 5.22643 5.30302 5.32232 5.41551 5.46581 5.50890 5.52147 5.56649 5.60053 5.65152 5.72054 5.91659 6.09185 6.20738 6.34918 6.40483 6.56026 6.56868 6.60407 6.77843 6.88667 7.49675 7.78408 7.92736 8.56880 8.95836 9.49097 11.00718 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015254 B = 0.003137 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.104877 B = 8923.256338 C = 9906.280556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.550 5.550 3 C 0.016 3.984 4 C 0.061 3.939 5 C -0.108 4.108 6 C -0.634 4.634 7 S 2.610 3.390 8 O -0.956 6.956 9 O -0.955 6.955 10 N -0.998 5.998 11 C 0.125 3.875 12 C 0.049 3.951 13 N -0.524 5.524 14 C 0.163 3.837 15 C -0.512 4.512 16 H 0.082 0.918 17 C 0.069 3.931 18 N -0.898 5.898 19 Si 0.875 3.125 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.269 1.269 23 C 0.037 3.963 24 C 0.129 3.871 25 H 0.026 0.974 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.028 0.972 31 H 0.080 0.920 32 H 0.040 0.960 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.023 0.977 40 H 0.102 0.898 41 H -0.012 1.012 42 H 0.026 0.974 43 H 0.264 0.736 44 H 0.025 0.975 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.989 7.328 -19.755 23.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.274 5.274 3 C -0.132 4.132 4 C -0.068 4.068 5 C -0.147 4.147 6 C -0.763 4.763 7 S 2.704 3.296 8 O -0.946 6.946 9 O -0.945 6.945 10 N -0.837 5.837 11 C 0.000 4.000 12 C -0.081 4.081 13 N -0.249 5.249 14 C 0.036 3.964 15 C -0.550 4.550 16 H 0.100 0.900 17 C -0.133 4.133 18 N -0.537 5.537 19 Si 0.703 3.297 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.194 1.194 23 C -0.093 4.093 24 C 0.003 3.997 25 H 0.045 0.955 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.047 0.953 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.042 0.958 40 H 0.121 0.879 41 H 0.006 0.994 42 H 0.044 0.956 43 H 0.074 0.926 44 H 0.043 0.957 45 H 0.100 0.900 46 H 0.103 0.897 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.752 7.276 -20.656 23.584 hybrid contribution -2.654 -0.262 1.558 3.088 sum -11.406 7.014 -19.098 23.325 Atomic orbital electron populations 1.22391 0.86966 1.02460 1.00641 1.61975 1.08141 1.14197 1.43103 1.22508 1.01361 0.88618 1.00743 1.22101 0.94291 0.98793 0.91572 1.21297 0.96906 1.00312 0.96210 1.30731 1.27928 1.10033 1.07617 1.05022 0.77213 0.73938 0.73470 1.93583 1.83369 1.66035 1.51630 1.93586 1.70506 1.44672 1.85761 1.57743 1.80631 1.15760 1.29576 1.21770 1.00664 0.95341 0.82243 1.22485 0.97041 0.89525 0.99002 1.61795 1.57985 1.03469 1.01644 1.20184 0.92989 0.94879 0.88301 1.21021 1.15445 1.30109 0.88467 0.89993 1.24901 0.96474 0.96055 0.95857 1.69890 1.40386 1.45105 0.98315 0.86867 0.83467 0.81803 0.77592 1.20106 1.21217 1.19418 1.22481 0.95574 0.99910 0.91372 1.21552 1.02362 0.77832 0.97944 0.95528 0.91182 0.91201 0.90842 0.91168 0.95344 0.90175 0.94147 0.89420 0.90359 0.85024 0.84944 0.89986 0.89596 0.95839 0.87946 0.99444 0.95631 0.92594 0.95653 0.90039 0.89652 0.90070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.57 60.06 0.57 0.73 16 2 N -0.55 -4.63 5.02 -251.26 -1.26 -5.89 16 3 C 0.02 0.12 9.32 60.06 0.56 0.68 16 4 C 0.06 0.51 4.96 -3.82 -0.02 0.49 16 5 C -0.11 -0.96 5.15 -26.73 -0.14 -1.10 16 6 C -0.63 -5.67 6.18 37.16 0.23 -5.44 16 7 S 2.61 32.11 5.42 -107.50 -0.58 31.52 16 8 O -0.96 -13.99 16.79 -57.54 -0.97 -14.96 16 9 O -0.95 -14.24 16.78 -57.54 -0.97 -15.21 16 10 N -1.00 -13.26 3.25 -112.97 -0.37 -13.63 16 11 C 0.12 1.79 6.50 -3.36 -0.02 1.77 16 12 C 0.05 0.84 5.47 -3.47 -0.02 0.83 16 13 N -0.52 -10.05 4.62 -235.47 -1.09 -11.13 16 14 C 0.16 3.70 3.79 -4.97 -0.02 3.68 16 15 C -0.51 -13.85 8.96 -34.44 -0.31 -14.16 16 16 H 0.08 2.41 7.37 -52.48 -0.39 2.02 16 17 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 18 N -0.90 -26.72 13.96 55.43 0.77 -25.95 16 19 Si 0.88 20.74 27.47 -169.99 -4.67 16.07 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 23 C 0.04 0.56 5.62 -3.70 -0.02 0.54 16 24 C 0.13 1.69 6.46 -3.60 -0.02 1.66 16 25 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.07 0.41 8.12 -51.92 -0.42 -0.01 16 27 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 28 H 0.07 0.53 6.47 -51.92 -0.34 0.20 16 29 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 30 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.08 0.62 8.06 -51.93 -0.42 0.20 16 32 H 0.04 0.33 8.12 -51.93 -0.42 -0.09 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.67 6.55 -51.93 -0.34 0.33 16 35 H 0.13 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.13 1.01 8.14 -51.92 -0.42 0.58 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.09 1.08 7.19 -51.93 -0.37 0.70 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.10 1.98 6.67 -51.93 -0.35 1.63 16 41 H -0.01 -0.28 7.18 -51.93 -0.37 -0.65 16 42 H 0.03 0.58 7.40 -51.93 -0.38 0.20 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 44 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.08 1.17 7.99 -51.93 -0.41 0.75 16 46 H 0.09 0.94 7.19 -51.93 -0.37 0.57 16 47 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 377.65 15.07 5.69 5.69 Total: -1.00 -33.61 377.65 -11.14 -44.75 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -8.40 Total: -2.79 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 0.70 Total: -8.48 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -1.94 Total: -56.61 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -1.93 Total: -30.16 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.07 kcal Atomic # 16 Polarization: 32.11 SS G_CDS: -0.58 Total: 31.52 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.61 -11.14 -44.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601536062.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.815 kcal (2) G-P(sol) polarization free energy of solvation -33.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds