Wall clock time and date at job start Fri Apr 10 2020 18:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46891 * 111.00120 * 2 1 4 4 C 1.46898 * 110.99814 * 123.96005 * 2 1 3 5 5 C 1.53006 * 109.47006 * 169.99400 * 4 2 1 6 6 C 1.52997 * 109.47127 * 179.97438 * 5 4 2 7 7 S 1.81399 * 109.47147 * 180.02562 * 6 5 4 8 8 O 1.42104 * 110.53977 * 291.62707 * 7 6 5 9 9 O 1.42095 * 110.54514 * 68.37328 * 7 6 5 10 10 N 1.65598 * 104.45041 * 180.02562 * 7 6 5 11 11 C 1.47084 * 120.87645 * 269.72140 * 10 7 6 12 12 C 1.53693 * 108.27477 * 128.75641 * 11 10 7 13 13 N 1.46895 * 109.26154 * 54.07940 * 12 11 10 14 14 C 1.46903 * 111.00495 * 172.60765 * 13 12 11 15 15 C 1.50703 * 109.47086 * 294.30323 * 14 13 12 16 16 H 1.08010 * 119.99448 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00099 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99773 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 119.99818 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47154 * 89.99880 * 19 17 15 21 21 H 1.48495 * 109.46885 * 210.00002 * 19 17 15 22 22 H 1.48500 * 109.47234 * 329.99903 * 19 17 15 23 23 C 1.46900 * 111.26753 * 296.75865 * 13 12 11 24 24 C 1.47078 * 120.88431 * 89.99967 * 10 7 6 25 25 H 1.09001 * 109.47083 * 296.04480 * 1 2 3 26 26 H 1.09009 * 109.47251 * 56.03829 * 1 2 3 27 27 H 1.08996 * 109.47789 * 176.04251 * 1 2 3 28 28 H 1.09008 * 109.47294 * 183.95307 * 3 2 1 29 29 H 1.08994 * 109.47718 * 303.95889 * 3 2 1 30 30 H 1.09007 * 109.47181 * 63.96365 * 3 2 1 31 31 H 1.09001 * 109.47062 * 49.99654 * 4 2 1 32 32 H 1.08993 * 109.47084 * 289.99101 * 4 2 1 33 33 H 1.09001 * 109.46801 * 300.00064 * 5 4 2 34 34 H 1.09001 * 109.46998 * 59.99660 * 5 4 2 35 35 H 1.08996 * 109.46952 * 300.00302 * 6 5 4 36 36 H 1.09001 * 109.46832 * 60.00321 * 6 5 4 37 37 H 1.08997 * 109.62553 * 248.52196 * 11 10 7 38 38 H 1.08999 * 109.63037 * 9.10206 * 11 10 7 39 39 H 1.09004 * 109.64959 * 294.07602 * 12 11 10 40 40 H 1.09005 * 109.41962 * 173.94663 * 12 11 10 41 41 H 1.08999 * 109.46811 * 54.29770 * 14 13 12 42 42 H 1.08997 * 109.47185 * 174.30635 * 14 13 12 43 43 H 0.97000 * 119.99606 * 179.97438 * 18 17 15 44 44 H 1.08995 * 109.49254 * 303.14017 * 23 13 12 45 45 H 1.09000 * 109.51385 * 183.07217 * 23 13 12 46 46 H 1.08997 * 109.62469 * 350.89369 * 24 10 7 47 47 H 1.08999 * 109.62615 * 111.47542 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 3.5044 -0.9556 0.9702 6 6 4.0528 -1.7530 2.1552 7 16 5.8420 -1.9770 1.9572 8 8 6.1182 -2.8425 0.8646 9 8 6.5185 -0.7353 2.0973 10 7 6.2999 -2.8450 3.2910 11 6 6.7187 -2.1656 4.5265 12 6 5.9175 -2.7572 5.6971 13 7 6.0794 -4.2172 5.7063 14 6 5.4751 -4.8064 6.9087 15 6 6.2320 -4.3468 8.1281 16 1 7.0771 -3.6829 8.0205 17 6 5.8449 -4.7728 9.3809 18 7 6.5052 -4.3712 10.4451 19 14 4.3828 -5.9204 9.5668 20 1 4.8481 -7.3292 9.5038 21 1 3.7239 -5.6747 10.8747 22 1 3.4141 -5.6696 8.4696 23 6 5.5251 -4.8224 4.4879 24 6 6.3044 -4.3156 3.2697 25 1 -0.3633 0.4512 0.9233 26 1 -0.3634 0.5741 -0.8524 27 1 -0.3634 -1.0251 -0.0709 28 1 3.0828 1.3431 -0.0709 29 1 1.5898 1.9163 -0.8523 30 1 1.7045 1.8722 0.9234 31 1 1.5088 -1.7408 1.1754 32 1 1.7976 -0.2249 2.0627 33 1 3.7022 -1.4968 0.0449 34 1 3.9910 0.0191 0.9321 35 1 3.8549 -1.2114 3.0802 36 1 3.5663 -2.7276 2.1936 37 1 7.7842 -2.3267 4.6897 38 1 6.5152 -1.0980 4.4443 39 1 4.8624 -2.5090 5.5817 40 1 6.2882 -2.3443 6.6354 41 1 4.4352 -4.4890 6.9855 42 1 5.5193 -5.8935 6.8421 43 1 6.2326 -4.6707 11.3265 44 1 4.4755 -4.5455 4.3893 45 1 5.6108 -5.9073 4.5489 46 1 5.8269 -4.6700 2.3562 47 1 7.3310 -4.6793 3.3144 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601536062.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:42 Heat of formation + Delta-G solvation = -79.803160 kcal Electronic energy + Delta-G solvation = -25834.190215 eV Core-core repulsion = 22178.402100 eV Total energy + Delta-G solvation = -3655.788115 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.79203 -38.78253 -38.27342 -37.07277 -36.00148 -34.56291 -34.30387 -32.05539 -30.16393 -28.55660 -28.28960 -26.75222 -24.69457 -24.15061 -23.16184 -21.99547 -21.31838 -19.79096 -18.95776 -18.67895 -17.62883 -17.41720 -16.66111 -16.54774 -16.14122 -15.99426 -15.86172 -15.66690 -15.63894 -15.20500 -15.13778 -14.87265 -14.47821 -13.73448 -13.67388 -13.55663 -13.43526 -13.29833 -13.27310 -13.20588 -12.93683 -12.88087 -12.65144 -12.61825 -12.52141 -12.49267 -12.24865 -12.17343 -11.85687 -11.82678 -11.73898 -11.44482 -11.32245 -10.75699 -10.04532 -9.38044 -8.95392 -8.25625 -6.28902 -0.80177 1.37529 1.38076 1.48261 1.57171 2.36321 2.74617 2.99380 3.07359 3.08806 3.21901 3.56932 3.71487 3.75755 3.93915 4.12185 4.19502 4.27164 4.31455 4.36096 4.37227 4.45574 4.49182 4.51343 4.60099 4.65685 4.73657 4.77203 4.84456 4.90475 4.94336 4.97105 5.00506 5.04142 5.04716 5.07142 5.15267 5.21393 5.53788 5.57114 6.00009 6.01915 6.02946 6.39221 6.68996 6.78593 7.34952 8.90834 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015254 B = 0.003137 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.104877 B = 8923.256338 C = 9906.280556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.565 5.565 3 C 0.013 3.987 4 C 0.061 3.939 5 C -0.114 4.114 6 C -0.610 4.610 7 S 2.615 3.385 8 O -0.981 6.981 9 O -0.987 6.987 10 N -1.002 6.002 11 C 0.133 3.867 12 C 0.052 3.948 13 N -0.546 5.546 14 C 0.172 3.828 15 C -0.515 4.515 16 H 0.039 0.961 17 C 0.006 3.994 18 N -0.950 5.950 19 Si 0.948 3.052 20 H -0.267 1.267 21 H -0.286 1.286 22 H -0.248 1.248 23 C 0.036 3.964 24 C 0.129 3.871 25 H 0.027 0.973 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.029 0.971 31 H 0.088 0.912 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.148 0.852 36 H 0.156 0.844 37 H 0.068 0.932 38 H 0.105 0.895 39 H 0.040 0.960 40 H 0.068 0.932 41 H -0.009 1.009 42 H 0.031 0.969 43 H 0.266 0.734 44 H 0.045 0.955 45 H 0.090 0.910 46 H 0.113 0.887 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.734 6.591 -21.496 25.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.289 5.289 3 C -0.135 4.135 4 C -0.068 4.068 5 C -0.154 4.154 6 C -0.742 4.742 7 S 2.713 3.287 8 O -0.972 6.972 9 O -0.977 6.977 10 N -0.839 5.839 11 C 0.008 3.992 12 C -0.078 4.078 13 N -0.271 5.271 14 C 0.045 3.955 15 C -0.553 4.553 16 H 0.058 0.942 17 C -0.191 4.191 18 N -0.590 5.590 19 Si 0.771 3.229 20 H -0.192 1.192 21 H -0.212 1.212 22 H -0.171 1.171 23 C -0.094 4.094 24 C 0.004 3.996 25 H 0.046 0.954 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.048 0.952 31 H 0.106 0.894 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.166 0.834 36 H 0.174 0.826 37 H 0.086 0.914 38 H 0.123 0.877 39 H 0.058 0.942 40 H 0.087 0.913 41 H 0.009 0.991 42 H 0.049 0.951 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.108 0.892 46 H 0.131 0.869 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.452 6.535 -22.438 26.025 hybrid contribution -1.766 0.056 2.025 2.688 sum -13.218 6.591 -20.413 25.196 Atomic orbital electron populations 1.22436 0.86079 1.02960 1.01053 1.61987 1.09076 1.14617 1.43242 1.22552 1.01287 0.88458 1.01222 1.22101 0.93624 0.99329 0.91715 1.21386 0.97586 1.00365 0.96051 1.30488 1.23399 1.11804 1.08544 1.04760 0.78599 0.72786 0.72525 1.93547 1.84718 1.66501 1.52416 1.93544 1.72608 1.45667 1.85910 1.57697 1.81344 1.15893 1.28969 1.21587 0.99450 0.96289 0.81893 1.22411 0.98200 0.88569 0.98601 1.61662 1.58790 1.04550 1.02054 1.19931 0.92345 0.95061 0.88128 1.21296 1.14444 1.28913 0.90661 0.94231 1.25850 0.99813 0.98016 0.95392 1.70059 1.42776 1.47207 0.99005 0.85712 0.79743 0.79392 0.78020 1.19239 1.21204 1.17136 1.22600 0.96691 1.00274 0.89815 1.21594 1.02044 0.77710 0.98238 0.95403 0.90453 0.90736 0.91098 0.90307 0.95237 0.89353 0.93938 0.89475 0.90352 0.83372 0.82570 0.91372 0.87730 0.94217 0.91347 0.99133 0.95133 0.92557 0.93732 0.89200 0.86905 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.57 127.69 1.22 1.48 16 2 N -0.56 -8.23 5.02 -948.85 -4.76 -12.99 16 3 C 0.01 0.17 9.32 127.69 1.19 1.36 16 4 C 0.06 0.85 4.96 86.31 0.43 1.27 16 5 C -0.11 -1.72 5.15 30.60 0.16 -1.56 16 6 C -0.61 -8.77 6.18 71.98 0.44 -8.33 16 7 S 2.62 59.24 5.42 -56.49 -0.31 58.93 16 8 O -0.98 -26.96 16.79 -127.65 -2.14 -29.10 16 9 O -0.99 -28.41 16.78 -127.65 -2.14 -30.55 16 10 N -1.00 -24.80 3.25 -511.34 -1.66 -26.46 16 11 C 0.13 3.75 6.50 86.50 0.56 4.31 16 12 C 0.05 1.76 5.47 86.54 0.47 2.23 16 13 N -0.55 -20.42 4.62 -898.88 -4.15 -24.57 16 14 C 0.17 7.66 3.79 85.56 0.32 7.99 16 15 C -0.51 -28.48 8.96 25.60 0.23 -28.25 16 16 H 0.04 2.46 7.37 -2.91 -0.02 2.43 16 17 C 0.01 0.36 5.47 84.65 0.46 0.82 16 18 N -0.95 -58.20 13.96 21.45 0.30 -57.90 16 19 Si 0.95 42.33 27.47 68.60 1.88 44.21 16 20 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 21 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 22 H -0.25 -10.12 6.54 99.48 0.65 -9.47 16 23 C 0.04 0.98 5.62 86.38 0.49 1.46 16 24 C 0.13 3.10 6.46 86.35 0.56 3.66 16 25 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 26 H 0.08 0.74 8.12 -2.38 -0.02 0.72 16 27 H 0.07 0.76 8.12 -2.39 -0.02 0.74 16 28 H 0.07 0.93 6.47 -2.38 -0.02 0.91 16 29 H 0.08 0.85 8.12 -2.39 -0.02 0.83 16 30 H 0.03 0.37 8.14 -2.38 -0.02 0.35 16 31 H 0.09 1.06 8.06 -2.39 -0.02 1.04 16 32 H 0.04 0.57 8.12 -2.39 -0.02 0.55 16 33 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.08 1.18 6.55 -2.39 -0.02 1.17 16 35 H 0.15 1.77 8.14 -2.39 -0.02 1.76 16 36 H 0.16 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.10 2.53 7.19 -2.39 -0.02 2.51 16 39 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.07 2.76 6.67 -2.38 -0.02 2.74 16 41 H -0.01 -0.39 7.18 -2.39 -0.02 -0.41 16 42 H 0.03 1.33 7.40 -2.39 -0.02 1.31 16 43 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 44 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.09 2.31 7.99 -2.39 -0.02 2.30 16 46 H 0.11 2.11 7.19 -2.39 -0.02 2.10 16 47 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -73.84 377.65 -5.58 -79.42 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.87 Total: 12.56 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: 6.54 Total: -13.55 kcal Atomic # 7 Polarization: -111.64 SS G_CDS: -10.28 Total: -121.92 kcal Atomic # 8 Polarization: -55.37 SS G_CDS: -4.29 Total: -59.65 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 1.88 Total: 44.21 kcal Atomic # 16 Polarization: 59.24 SS G_CDS: -0.31 Total: 58.93 kcal Total: -73.84 -5.58 -79.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601536062.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.380 kcal (2) G-P(sol) polarization free energy of solvation -73.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds