Wall clock time and date at job start Fri Apr 10 2020 18:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31817 * 119.12274 * 2 1 4 4 C 1.32322 * 120.81593 * 179.97438 * 3 2 1 5 5 C 1.38616 * 119.10259 * 359.97438 * 4 3 2 6 6 C 1.38576 * 118.40581 * 0.02562 * 5 4 3 7 7 C 1.50693 * 120.45169 * 180.02562 * 6 5 4 8 8 N 1.46509 * 109.47258 * 94.99859 * 7 6 5 9 9 C 1.34774 * 119.99807 * 179.72359 * 8 7 6 10 10 O 1.21584 * 120.00140 * 355.18628 * 9 8 7 11 11 N 1.34777 * 119.99513 * 175.18991 * 9 8 7 12 12 C 1.47082 * 120.87935 * 184.71787 * 11 9 8 13 13 C 1.53693 * 108.27774 * 128.74970 * 12 11 9 14 14 N 1.46902 * 109.25351 * 54.08172 * 13 12 11 15 15 C 1.46907 * 110.99965 * 172.60497 * 14 13 12 16 16 C 1.50703 * 109.47048 * 294.30394 * 15 14 13 17 17 H 1.07997 * 120.00040 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99730 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00073 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99801 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47108 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47235 * 120.00656 * 20 18 16 23 23 H 1.48506 * 109.47143 * 240.00115 * 20 18 16 24 24 C 1.46893 * 111.27197 * 296.75343 * 14 13 12 25 25 C 1.47073 * 120.88291 * 4.99131 * 11 9 8 26 26 N 1.31778 * 119.12175 * 180.25403 * 2 1 3 27 27 H 1.09004 * 109.46954 * 90.00233 * 1 2 3 28 28 H 1.09001 * 109.47343 * 210.00160 * 1 2 3 29 29 H 1.09001 * 109.46984 * 330.00339 * 1 2 3 30 30 H 1.07994 * 120.44628 * 180.02562 * 4 3 2 31 31 H 1.08001 * 120.79808 * 180.02562 * 5 4 3 32 32 H 1.08993 * 109.47117 * 334.99678 * 7 6 5 33 33 H 1.09004 * 109.46911 * 214.99386 * 7 6 5 34 34 H 0.96996 * 119.99495 * 0.02562 * 8 7 6 35 35 H 1.08998 * 109.62540 * 248.52006 * 12 11 9 36 36 H 1.09000 * 109.62874 * 9.10361 * 12 11 9 37 37 H 1.09000 * 109.65181 * 294.08080 * 13 12 11 38 38 H 1.09001 * 109.42356 * 173.94297 * 13 12 11 39 39 H 1.08998 * 109.46929 * 54.30492 * 15 14 13 40 40 H 1.08995 * 109.47360 * 174.30423 * 15 14 13 41 41 H 0.97000 * 120.00380 * 179.97438 * 19 18 16 42 42 H 1.08995 * 109.49798 * 303.14495 * 24 14 13 43 43 H 1.08998 * 109.49542 * 183.06044 * 24 14 13 44 44 H 1.08998 * 109.63441 * 350.90223 * 25 11 9 45 45 H 1.08997 * 109.63028 * 111.48100 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4711 1.1906 0.0005 5 6 4.1808 -0.0001 0.0016 6 6 3.4713 -1.1904 0.0015 7 6 4.1961 -2.5116 0.0033 8 7 4.3239 -2.9968 1.3798 9 6 4.9372 -4.1713 1.6261 10 8 5.3065 -4.8698 0.7019 11 7 5.1411 -4.5716 2.8968 12 6 5.8985 -5.7979 3.1896 13 6 6.9905 -5.4565 4.2159 14 7 6.3736 -4.8142 5.3841 15 6 7.3541 -4.6298 6.4625 16 6 7.7955 -5.9762 6.9757 17 1 7.3881 -6.8786 6.5443 18 6 8.7194 -6.0560 7.9960 19 7 9.2151 -4.9571 8.5216 20 14 9.2671 -7.7249 8.6317 21 1 8.5663 -8.7958 7.8785 22 1 10.7335 -7.8683 8.4465 23 1 8.9373 -7.8374 10.0753 24 6 5.7449 -3.5374 5.0203 25 6 4.6071 -3.7969 4.0271 26 7 2.1483 -1.1512 -0.0051 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 3.9906 2.1374 0.0009 31 1 5.2608 -0.0001 0.0024 32 1 5.1879 -2.3825 -0.4300 33 1 3.6334 -3.2355 -0.5863 34 1 3.9632 -2.4747 2.1134 35 1 5.2282 -6.5527 3.6010 36 1 6.3581 -6.1717 2.2747 37 1 7.7152 -4.7769 3.7676 38 1 7.4939 -6.3717 4.5276 39 1 8.2175 -4.0861 6.0793 40 1 6.8988 -4.0629 7.2745 41 1 9.8648 -5.0131 9.2397 42 1 6.4869 -2.8845 4.5608 43 1 5.3449 -3.0608 5.9152 44 1 4.2124 -2.8471 3.6663 45 1 3.8152 -4.3630 4.5174 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601562187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:45 Heat of formation + Delta-G solvation = 39.335183 kcal Electronic energy + Delta-G solvation = -26244.708024 eV Core-core repulsion = 22490.934935 eV Total energy + Delta-G solvation = -3753.773089 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.57124 -40.22597 -37.75195 -35.77445 -34.45488 -33.91959 -33.29919 -32.37572 -30.74084 -29.13623 -28.51392 -27.27855 -25.42554 -23.89603 -23.24773 -22.51299 -22.11246 -20.78524 -19.46582 -18.21790 -18.06166 -16.77077 -16.41540 -16.21724 -15.62369 -15.56220 -15.52998 -14.92534 -14.60032 -14.37310 -14.11944 -13.97860 -13.83947 -13.55018 -13.39590 -13.20800 -12.99709 -12.72134 -12.55007 -12.24288 -12.01764 -11.33698 -11.32674 -11.20067 -11.15750 -10.87006 -10.76226 -10.62454 -10.54056 -10.11759 -9.90191 -9.84191 -9.68195 -9.31641 -9.26132 -8.50869 -8.37482 -7.35455 -6.08251 -4.09958 0.38222 0.55895 2.63013 3.22388 3.28395 3.30532 3.36189 3.40788 3.41176 3.62060 3.89357 3.97851 4.37678 4.48323 4.61357 4.74296 4.90172 4.97852 5.11693 5.14016 5.17815 5.26397 5.30192 5.34633 5.42960 5.46103 5.52632 5.62266 5.80187 5.89136 5.96240 6.01206 6.15884 6.24271 6.38538 6.53137 6.56536 6.63510 6.97264 7.19326 7.25377 7.65236 7.72460 7.91274 7.98724 8.09662 8.45204 8.59051 8.97746 9.54851 11.02639 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.024637 B = 0.002326 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.230014 B =12036.258993 C =12503.835258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.317 3.683 3 N -0.517 5.517 4 C 0.153 3.847 5 C -0.216 4.216 6 C 0.163 3.837 7 C 0.191 3.809 8 N -0.744 5.744 9 C 0.711 3.289 10 O -0.593 6.593 11 N -0.623 5.623 12 C 0.133 3.867 13 C 0.051 3.949 14 N -0.535 5.535 15 C 0.194 3.806 16 C -0.509 4.509 17 H 0.065 0.935 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.898 3.102 21 H -0.271 1.271 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.041 3.959 25 C 0.119 3.881 26 N -0.504 5.504 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.172 0.828 31 H 0.152 0.848 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.396 0.604 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.025 0.975 38 H 0.098 0.902 39 H -0.009 1.009 40 H 0.031 0.969 41 H 0.261 0.739 42 H 0.026 0.974 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.726 12.013 -16.849 24.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.050 3.950 3 N -0.232 5.232 4 C -0.013 4.013 5 C -0.238 4.238 6 C 0.015 3.985 7 C 0.066 3.934 8 N -0.404 5.404 9 C 0.413 3.587 10 O -0.472 6.472 11 N -0.360 5.360 12 C 0.011 3.989 13 C -0.079 4.079 14 N -0.260 5.260 15 C 0.069 3.931 16 C -0.547 4.547 17 H 0.083 0.917 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.089 4.089 25 C -0.005 4.005 26 N -0.219 5.219 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.189 0.811 31 H 0.170 0.830 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.233 0.767 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.043 0.957 38 H 0.116 0.884 39 H 0.009 0.991 40 H 0.049 0.951 41 H 0.071 0.929 42 H 0.044 0.956 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.668 11.235 -17.226 25.261 hybrid contribution 1.878 0.221 0.617 1.989 sum -12.790 11.455 -16.609 23.889 Atomic orbital electron populations 1.20596 0.85435 1.04410 1.04026 1.23350 0.98349 0.83156 0.90131 1.68296 1.10265 1.30524 1.14120 1.23312 0.89593 0.98779 0.89597 1.22868 1.03381 0.93995 1.03591 1.21700 0.89762 0.95596 0.91402 1.19915 0.99454 0.89805 0.84239 1.45062 1.64091 1.23037 1.08186 1.15709 0.78743 0.80901 0.83358 1.90901 1.58042 1.55280 1.42953 1.47394 1.57392 1.27728 1.03452 1.21861 0.93490 0.84662 0.98924 1.22463 0.94226 1.00909 0.90268 1.62078 1.35110 1.20366 1.08455 1.19730 0.88034 0.97547 0.87799 1.21181 1.23027 0.92499 1.18001 0.91677 1.24998 0.96273 0.96812 0.96542 1.69963 1.30380 1.27108 1.26329 0.86433 0.78273 0.83976 0.78705 1.19572 1.21110 1.21010 1.22376 0.95829 0.92887 0.97773 1.21767 0.97051 0.94632 0.87034 1.68145 1.09409 1.30704 1.13637 0.89500 0.89393 0.89471 0.81063 0.83009 0.89439 0.89231 0.76729 0.91033 0.89260 0.95702 0.88406 0.99123 0.95084 0.92931 0.95552 0.90129 0.91535 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.55 10.32 36.00 0.37 -0.17 16 2 C 0.32 2.98 7.64 -157.19 -1.20 1.77 16 3 N -0.52 -4.79 10.34 -10.72 -0.11 -4.90 16 4 C 0.15 1.11 11.31 -17.20 -0.19 0.91 16 5 C -0.22 -1.57 9.84 -39.32 -0.39 -1.96 16 6 C 0.16 1.50 6.19 -82.24 -0.51 0.99 16 7 C 0.19 1.93 6.03 -5.19 -0.03 1.89 16 8 N -0.74 -8.67 5.46 -66.41 -0.36 -9.03 16 9 C 0.71 10.84 8.31 -86.92 -0.72 10.12 16 10 O -0.59 -10.92 15.83 5.29 0.08 -10.83 16 11 N -0.62 -9.44 3.00 -177.91 -0.53 -9.97 16 12 C 0.13 2.18 6.61 -3.36 -0.02 2.16 16 13 C 0.05 0.96 5.47 -3.46 -0.02 0.94 16 14 N -0.53 -10.92 4.62 -235.47 -1.09 -12.01 16 15 C 0.19 4.86 4.72 -4.97 -0.02 4.83 16 16 C -0.51 -13.82 8.41 -34.44 -0.29 -14.11 16 17 H 0.07 1.75 7.13 -52.49 -0.37 1.37 16 18 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 19 N -0.90 -26.18 13.29 55.43 0.74 -25.45 16 20 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C 0.04 0.68 5.62 -3.70 -0.02 0.66 16 25 C 0.12 1.59 6.59 -3.60 -0.02 1.56 16 26 N -0.50 -5.19 10.27 -6.99 -0.07 -5.26 16 27 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.17 0.68 8.06 -52.49 -0.42 0.25 16 31 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.09 0.81 8.06 -51.93 -0.42 0.39 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.40 4.08 5.96 -40.82 -0.24 3.83 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.09 1.46 7.09 -51.93 -0.37 1.09 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.10 1.97 6.67 -51.93 -0.35 1.63 16 39 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 40 H 0.03 0.83 7.97 -51.93 -0.41 0.41 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.08 1.27 7.99 -51.93 -0.41 0.86 16 44 H 0.07 0.70 5.63 -51.93 -0.29 0.40 16 45 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 370.38 15.07 5.58 5.58 Total: -1.00 -33.53 370.38 -10.61 -44.14 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -6.66 Total: 0.48 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: -3.17 Total: 11.03 kcal Atomic # 7 Polarization: -65.19 SS G_CDS: -1.43 Total: -66.62 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.08 Total: -10.83 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.53 -10.61 -44.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601562187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.480 kcal (2) G-P(sol) polarization free energy of solvation -33.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds