Wall clock time and date at job start Fri Apr 10 2020 18:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31817 * 119.12274 * 2 1 4 4 C 1.32322 * 120.81593 * 179.97438 * 3 2 1 5 5 C 1.38616 * 119.10259 * 359.97438 * 4 3 2 6 6 C 1.38576 * 118.40581 * 0.02562 * 5 4 3 7 7 C 1.50693 * 120.45169 * 180.02562 * 6 5 4 8 8 N 1.46509 * 109.47258 * 94.99859 * 7 6 5 9 9 C 1.34774 * 119.99807 * 179.72359 * 8 7 6 10 10 O 1.21584 * 120.00140 * 355.18628 * 9 8 7 11 11 N 1.34777 * 119.99513 * 175.18991 * 9 8 7 12 12 C 1.47082 * 120.87935 * 184.71787 * 11 9 8 13 13 C 1.53693 * 108.27774 * 128.74970 * 12 11 9 14 14 N 1.46902 * 109.25351 * 54.08172 * 13 12 11 15 15 C 1.46907 * 110.99965 * 172.60497 * 14 13 12 16 16 C 1.50703 * 109.47048 * 294.30394 * 15 14 13 17 17 H 1.07997 * 120.00040 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99730 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00073 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99801 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47108 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47235 * 120.00656 * 20 18 16 23 23 H 1.48506 * 109.47143 * 240.00115 * 20 18 16 24 24 C 1.46893 * 111.27197 * 296.75343 * 14 13 12 25 25 C 1.47073 * 120.88291 * 4.99131 * 11 9 8 26 26 N 1.31778 * 119.12175 * 180.25403 * 2 1 3 27 27 H 1.09004 * 109.46954 * 90.00233 * 1 2 3 28 28 H 1.09001 * 109.47343 * 210.00160 * 1 2 3 29 29 H 1.09001 * 109.46984 * 330.00339 * 1 2 3 30 30 H 1.07994 * 120.44628 * 180.02562 * 4 3 2 31 31 H 1.08001 * 120.79808 * 180.02562 * 5 4 3 32 32 H 1.08993 * 109.47117 * 334.99678 * 7 6 5 33 33 H 1.09004 * 109.46911 * 214.99386 * 7 6 5 34 34 H 0.96996 * 119.99495 * 0.02562 * 8 7 6 35 35 H 1.08998 * 109.62540 * 248.52006 * 12 11 9 36 36 H 1.09000 * 109.62874 * 9.10361 * 12 11 9 37 37 H 1.09000 * 109.65181 * 294.08080 * 13 12 11 38 38 H 1.09001 * 109.42356 * 173.94297 * 13 12 11 39 39 H 1.08998 * 109.46929 * 54.30492 * 15 14 13 40 40 H 1.08995 * 109.47360 * 174.30423 * 15 14 13 41 41 H 0.97000 * 120.00380 * 179.97438 * 19 18 16 42 42 H 1.08995 * 109.49798 * 303.14495 * 24 14 13 43 43 H 1.08998 * 109.49542 * 183.06044 * 24 14 13 44 44 H 1.08998 * 109.63441 * 350.90223 * 25 11 9 45 45 H 1.08997 * 109.63028 * 111.48100 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4711 1.1906 0.0005 5 6 4.1808 -0.0001 0.0016 6 6 3.4713 -1.1904 0.0015 7 6 4.1961 -2.5116 0.0033 8 7 4.3239 -2.9968 1.3798 9 6 4.9372 -4.1713 1.6261 10 8 5.3065 -4.8698 0.7019 11 7 5.1411 -4.5716 2.8968 12 6 5.8985 -5.7979 3.1896 13 6 6.9905 -5.4565 4.2159 14 7 6.3736 -4.8142 5.3841 15 6 7.3541 -4.6298 6.4625 16 6 7.7955 -5.9762 6.9757 17 1 7.3881 -6.8786 6.5443 18 6 8.7194 -6.0560 7.9960 19 7 9.2151 -4.9571 8.5216 20 14 9.2671 -7.7249 8.6317 21 1 8.5663 -8.7958 7.8785 22 1 10.7335 -7.8683 8.4465 23 1 8.9373 -7.8374 10.0753 24 6 5.7449 -3.5374 5.0203 25 6 4.6071 -3.7969 4.0271 26 7 2.1483 -1.1512 -0.0051 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 3.9906 2.1374 0.0009 31 1 5.2608 -0.0001 0.0024 32 1 5.1879 -2.3825 -0.4300 33 1 3.6334 -3.2355 -0.5863 34 1 3.9632 -2.4747 2.1134 35 1 5.2282 -6.5527 3.6010 36 1 6.3581 -6.1717 2.2747 37 1 7.7152 -4.7769 3.7676 38 1 7.4939 -6.3717 4.5276 39 1 8.2175 -4.0861 6.0793 40 1 6.8988 -4.0629 7.2745 41 1 9.8648 -5.0131 9.2397 42 1 6.4869 -2.8845 4.5608 43 1 5.3449 -3.0608 5.9152 44 1 4.2124 -2.8471 3.6663 45 1 3.8152 -4.3630 4.5174 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601562187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:44 Heat of formation + Delta-G solvation = 15.328252 kcal Electronic energy + Delta-G solvation = -26245.749043 eV Core-core repulsion = 22490.934935 eV Total energy + Delta-G solvation = -3754.814108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.21893 -41.41860 -39.17326 -36.69846 -36.00836 -34.61907 -34.41443 -33.96917 -32.06140 -30.23814 -29.52965 -28.39010 -27.04461 -24.76993 -24.34636 -23.93732 -23.15913 -22.20434 -20.67826 -19.37378 -18.73308 -18.50224 -17.65095 -17.15350 -16.71806 -16.70002 -16.28756 -16.18283 -16.00439 -15.72669 -15.37891 -15.29814 -15.03774 -14.85209 -14.38602 -14.08091 -13.94912 -13.70023 -13.52241 -13.45234 -13.19074 -13.09195 -12.74730 -12.59912 -12.38341 -12.32620 -12.16166 -11.92042 -11.88962 -11.74743 -11.39756 -11.20182 -10.62266 -10.47194 -10.39653 -10.31139 -9.65321 -9.04511 -8.20808 -6.30234 -0.25536 -0.03327 1.42102 1.43288 1.55344 1.56690 2.02935 2.40844 2.59252 2.75250 2.91908 3.07462 3.11856 3.22439 3.39363 3.86319 3.91669 4.03857 4.09145 4.11145 4.24703 4.31703 4.42716 4.45561 4.51596 4.55491 4.60520 4.70175 4.70692 4.83920 4.89612 4.94973 5.01115 5.05021 5.16827 5.21747 5.26425 5.40074 5.42361 5.64295 5.82088 5.96772 6.03592 6.25483 6.57881 6.81281 6.85817 7.03357 7.39623 7.41423 8.90474 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.024637 B = 0.002326 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.230014 B =12036.258993 C =12503.835258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.302 3.698 3 N -0.533 5.533 4 C 0.152 3.848 5 C -0.208 4.208 6 C 0.150 3.850 7 C 0.194 3.806 8 N -0.730 5.730 9 C 0.711 3.289 10 O -0.627 6.627 11 N -0.627 5.627 12 C 0.146 3.854 13 C 0.057 3.943 14 N -0.539 5.539 15 C 0.209 3.791 16 C -0.521 4.521 17 H 0.066 0.934 18 C 0.002 3.998 19 N -0.934 5.934 20 Si 0.968 3.032 21 H -0.262 1.262 22 H -0.281 1.281 23 H -0.279 1.279 24 C 0.039 3.961 25 C 0.128 3.872 26 N -0.526 5.526 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.205 0.795 31 H 0.176 0.824 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.405 0.595 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.013 0.987 38 H 0.081 0.919 39 H -0.040 1.040 40 H 0.010 0.990 41 H 0.264 0.736 42 H 0.021 0.979 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.621 12.504 -17.426 25.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.035 3.965 3 N -0.248 5.248 4 C -0.014 4.014 5 C -0.230 4.230 6 C 0.004 3.996 7 C 0.070 3.930 8 N -0.388 5.388 9 C 0.412 3.588 10 O -0.508 6.508 11 N -0.363 5.363 12 C 0.022 3.978 13 C -0.072 4.072 14 N -0.264 5.264 15 C 0.083 3.917 16 C -0.560 4.560 17 H 0.084 0.916 18 C -0.196 4.196 19 N -0.575 5.575 20 Si 0.793 3.207 21 H -0.186 1.186 22 H -0.207 1.207 23 H -0.205 1.205 24 C -0.090 4.090 25 C 0.005 3.995 26 N -0.242 5.242 27 H 0.115 0.885 28 H 0.108 0.892 29 H 0.114 0.886 30 H 0.221 0.779 31 H 0.193 0.807 32 H 0.115 0.885 33 H 0.094 0.906 34 H 0.243 0.757 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.031 0.969 38 H 0.099 0.901 39 H -0.023 1.023 40 H 0.028 0.972 41 H 0.073 0.927 42 H 0.040 0.960 43 H 0.106 0.894 44 H 0.120 0.880 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.602 11.756 -17.817 26.440 hybrid contribution 2.145 0.171 0.748 2.278 sum -13.457 11.927 -17.069 24.793 Atomic orbital electron populations 1.20669 0.83953 1.04870 1.04780 1.23816 0.99476 0.83032 0.90165 1.68363 1.11377 1.30491 1.14615 1.23908 0.89118 1.00122 0.88241 1.23101 1.04496 0.93177 1.02254 1.21618 0.89761 0.95687 0.92584 1.19931 0.99959 0.90086 0.83040 1.44944 1.62856 1.21747 1.09282 1.15798 0.78742 0.81446 0.82784 1.90880 1.59510 1.56501 1.43887 1.47392 1.57321 1.27533 1.04062 1.21622 0.92871 0.85434 0.97853 1.22380 0.94966 0.99657 0.90232 1.61990 1.33486 1.22692 1.08250 1.19371 0.87717 0.96036 0.88576 1.21499 1.23105 0.93288 1.18084 0.91615 1.25890 0.96339 1.00607 0.96804 1.70081 1.31075 1.29386 1.26968 0.85353 0.77825 0.79454 0.78108 1.18599 1.20689 1.20490 1.22498 0.96458 0.90984 0.99064 1.21802 0.95603 0.96304 0.85761 1.68121 1.10067 1.31419 1.14576 0.88540 0.89248 0.88633 0.77877 0.80699 0.88466 0.90553 0.75745 0.90326 0.89282 0.96917 0.90092 1.02270 0.97168 0.92726 0.96036 0.89394 0.88008 0.89597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.32 71.24 0.74 -0.24 16 2 C 0.30 5.27 7.64 138.75 1.06 6.33 16 3 N -0.53 -8.91 10.34 -187.84 -1.94 -10.85 16 4 C 0.15 1.80 11.31 84.71 0.96 2.76 16 5 C -0.21 -2.50 9.84 22.44 0.22 -2.28 16 6 C 0.15 2.52 6.19 42.56 0.26 2.78 16 7 C 0.19 3.65 6.03 85.63 0.52 4.17 16 8 N -0.73 -15.60 5.46 -482.30 -2.63 -18.23 16 9 C 0.71 20.63 8.31 179.05 1.49 22.12 16 10 O -0.63 -22.57 15.83 -3.98 -0.06 -22.63 16 11 N -0.63 -18.03 3.00 -835.06 -2.51 -20.53 16 12 C 0.15 4.65 6.61 86.50 0.57 5.22 16 13 C 0.06 2.17 5.47 86.54 0.47 2.64 16 14 N -0.54 -22.11 4.62 -898.88 -4.15 -26.27 16 15 C 0.21 10.78 4.72 85.56 0.40 11.19 16 16 C -0.52 -28.75 8.41 25.60 0.22 -28.54 16 17 H 0.07 3.54 7.13 -2.91 -0.02 3.52 16 18 C 0.00 0.09 5.46 84.66 0.46 0.55 16 19 N -0.93 -55.34 13.29 21.45 0.28 -55.06 16 20 Si 0.97 43.63 29.54 68.60 2.03 45.66 16 21 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 24 C 0.04 1.25 5.62 86.39 0.49 1.74 16 25 C 0.13 3.13 6.59 86.35 0.57 3.70 16 26 N -0.53 -10.21 10.27 -176.03 -1.81 -12.02 16 27 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.20 0.91 8.06 -2.91 -0.02 0.88 16 31 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 32 H 0.10 1.65 8.06 -2.39 -0.02 1.63 16 33 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.40 7.26 5.96 -92.71 -0.55 6.70 16 35 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.09 2.88 7.09 -2.39 -0.02 2.86 16 37 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.08 3.34 6.67 -2.39 -0.02 3.32 16 39 H -0.04 -2.30 8.12 -2.39 -0.02 -2.32 16 40 H 0.01 0.56 7.97 -2.39 -0.02 0.54 16 41 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 42 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.09 2.69 7.99 -2.39 -0.02 2.67 16 44 H 0.10 1.79 5.63 -2.39 -0.01 1.78 16 45 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -73.15 370.38 -1.92 -75.07 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.45 Total: 12.71 kcal Atomic # 6 Polarization: 23.73 SS G_CDS: 8.42 Total: 32.15 kcal Atomic # 7 Polarization: -130.21 SS G_CDS: -12.76 Total: -142.97 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.06 Total: -22.63 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -73.15 -1.92 -75.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601562187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.403 kcal (2) G-P(sol) polarization free energy of solvation -73.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds