Wall clock time and date at job start Fri Apr 10 2020 18:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34953 * 125.52606 * 2 1 4 4 C 1.41213 * 108.24899 * 180.02562 * 3 2 1 5 5 N 1.32934 * 126.38282 * 180.02562 * 4 3 2 6 6 C 1.33824 * 119.99856 * 0.02562 * 5 4 3 7 7 O 1.21838 * 120.00367 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00099 * 179.97438 * 6 5 4 9 9 C 1.47155 * 120.68631 * 179.97438 * 8 6 5 10 10 C 1.53899 * 108.08420 * 132.63733 * 9 8 6 11 11 H 1.09001 * 112.11978 * 181.99182 * 10 9 8 12 12 C 1.54552 * 107.80518 * 306.62634 * 10 9 8 13 13 C 1.54257 * 104.94105 * 88.97030 * 12 10 9 14 14 C 1.54545 * 104.93773 * 359.97438 * 13 12 10 15 15 H 1.09000 * 112.20422 * 146.47625 * 14 13 12 16 16 C 1.47177 * 120.69678 * 359.91506 * 8 6 5 17 17 N 1.48725 * 107.17547 * 58.41332 * 10 9 8 18 18 N 1.37424 * 107.23940 * 0.25942 * 4 3 2 19 19 H 0.96996 * 126.37220 * 179.71525 * 18 4 3 20 20 N 1.36453 * 125.52765 * 180.02562 * 2 1 3 21 21 C 1.46507 * 125.85397 * 359.97423 * 20 2 1 22 22 C 1.50694 * 109.46787 * 84.99796 * 21 20 2 23 23 H 1.08004 * 120.00529 * 0.02562 * 22 21 20 24 24 C 1.37876 * 119.99984 * 179.97438 * 22 21 20 25 25 N 1.31519 * 120.00218 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 119.99750 * 0.02562 * 24 22 21 27 27 H 1.48497 * 109.47324 * 89.99771 * 26 24 22 28 28 H 1.48504 * 109.46856 * 209.99637 * 26 24 22 29 29 H 1.48496 * 109.47194 * 329.99235 * 26 24 22 30 30 H 1.08996 * 109.47480 * 89.97728 * 1 2 3 31 31 H 1.09009 * 109.47265 * 209.97662 * 1 2 3 32 32 H 1.09000 * 109.47179 * 329.97384 * 1 2 3 33 33 H 1.08001 * 125.87963 * 359.97438 * 3 2 1 34 34 H 1.09002 * 109.74696 * 12.97441 * 9 8 6 35 35 H 1.09000 * 109.75014 * 252.29866 * 9 8 6 36 36 H 1.09000 * 110.34407 * 207.83444 * 12 10 9 37 37 H 1.09004 * 110.34880 * 330.09979 * 12 10 9 38 38 H 1.08997 * 110.34152 * 241.12872 * 13 12 10 39 39 H 1.08996 * 110.43549 * 118.90570 * 13 12 10 40 40 H 1.08998 * 109.70665 * 107.72582 * 16 8 6 41 41 H 1.08999 * 109.79303 * 347.04974 * 16 8 6 42 42 H 1.00902 * 111.00215 * 45.99877 * 17 10 9 43 43 H 1.08997 * 109.46931 * 205.00360 * 21 20 2 44 44 H 1.08999 * 109.46512 * 325.00388 * 21 20 2 45 45 H 0.96996 * 119.99601 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2911 1.0983 0.0000 4 6 3.6395 0.6789 -0.0006 5 7 4.7103 1.4667 -0.0003 6 6 4.5625 2.7967 0.0012 7 8 3.4466 3.2857 0.0027 8 7 5.6481 3.5954 0.0020 9 6 5.5030 5.0598 0.0030 10 6 6.4418 5.6321 1.0799 11 1 6.3609 6.7160 1.1610 12 6 6.1313 4.9092 2.4102 13 6 7.0457 3.6668 2.4106 14 6 7.8281 3.7476 1.0802 15 1 8.8390 3.3506 1.1721 16 6 7.0032 3.0213 0.0032 17 7 7.8215 5.1950 0.7371 18 7 3.6386 -0.6953 -0.0069 19 1 4.4192 -1.2710 -0.0127 20 7 2.2998 -1.1105 -0.0005 21 6 1.8321 -2.4989 -0.0006 22 6 1.5538 -2.9350 -1.4159 23 1 1.7102 -2.2471 -2.2337 24 6 1.1007 -4.2127 -1.6671 25 7 0.8583 -4.5936 -2.9024 26 14 0.8309 -5.4029 -0.2528 27 1 -0.5624 -5.2735 0.2443 28 1 1.0612 -6.7922 -0.7243 29 1 1.7796 -5.0894 0.8457 30 1 -0.3634 0.0004 -1.0276 31 1 -0.3634 -0.8903 0.5135 32 1 -0.3633 0.8897 0.5142 33 1 1.9467 2.1220 -0.0004 34 1 4.4718 5.3276 0.2333 35 1 5.7773 5.4578 -0.9739 36 1 6.3681 5.5543 3.2563 37 1 5.0839 4.6089 2.4429 38 1 6.4476 2.7562 2.4435 39 1 7.7319 3.6996 3.2568 40 1 7.4643 3.1654 -0.9739 41 1 6.9530 1.9570 0.2331 42 1 8.0118 5.3346 -0.2440 43 1 2.5989 -3.1406 0.4334 44 1 0.9185 -2.5744 0.5891 45 1 0.5391 -5.4923 -3.0790 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601563731.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:46 Heat of formation + Delta-G solvation = 72.198904 kcal Electronic energy + Delta-G solvation = -27234.561182 eV Core-core repulsion = 23482.213170 eV Total energy + Delta-G solvation = -3752.348012 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.43766 -41.65697 -39.52705 -36.06677 -34.83296 -34.79166 -33.76140 -32.84371 -32.19617 -31.33748 -28.91885 -28.85420 -26.77600 -25.60184 -24.44096 -23.16012 -21.53691 -21.35540 -21.04618 -20.18580 -19.29035 -18.64565 -17.89880 -17.26281 -17.20457 -16.65047 -16.48680 -16.20140 -15.67597 -15.15335 -15.12244 -14.74016 -14.68090 -14.36337 -14.28123 -14.09533 -13.90332 -13.78123 -13.61649 -13.59140 -13.28142 -13.05019 -12.94248 -12.59716 -12.36562 -12.27572 -12.15593 -11.85805 -11.83127 -11.34601 -11.21942 -11.16120 -10.92159 -10.34864 -10.09812 -9.85658 -9.19035 -8.43462 -8.33137 -6.56812 0.21145 0.52658 1.37653 1.39047 1.47586 1.58073 2.08252 2.24676 2.82678 2.94027 3.08980 3.19553 3.64923 3.69573 3.77371 3.93088 3.96340 4.11385 4.17715 4.24520 4.31539 4.41909 4.45053 4.62219 4.68865 4.72637 4.76014 4.78266 4.81581 4.89929 4.92206 4.99002 5.03695 5.05991 5.14364 5.16309 5.26627 5.29158 5.70142 5.78349 5.85637 5.99201 6.10097 6.34968 6.37779 6.51711 6.77759 6.95181 7.09335 8.05488 8.73228 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.027144 B = 0.002783 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.287055 B =10058.204947 C =10369.009706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.198 3.802 3 C -0.349 4.349 4 C 0.475 3.525 5 N -0.712 5.712 6 C 0.676 3.324 7 O -0.661 6.661 8 N -0.606 5.606 9 C 0.094 3.906 10 C 0.062 3.938 11 H 0.129 0.871 12 C -0.112 4.112 13 C -0.111 4.111 14 C 0.059 3.941 15 H 0.127 0.873 16 C 0.094 3.906 17 N -0.652 5.652 18 N -0.466 5.466 19 H 0.453 0.547 20 N -0.350 5.350 21 C 0.235 3.765 22 C -0.561 4.561 23 H 0.031 0.969 24 C 0.026 3.974 25 N -0.935 5.935 26 Si 0.946 3.054 27 H -0.254 1.254 28 H -0.287 1.287 29 H -0.235 1.235 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.170 0.830 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.041 0.959 38 H 0.045 0.955 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.344 0.656 43 H 0.066 0.934 44 H 0.089 0.911 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.520 12.380 11.419 18.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.073 3.927 3 C -0.381 4.381 4 C 0.222 3.778 5 N -0.477 5.477 6 C 0.377 3.623 7 O -0.546 6.546 8 N -0.341 5.341 9 C -0.030 4.030 10 C -0.049 4.049 11 H 0.146 0.854 12 C -0.150 4.150 13 C -0.149 4.149 14 C -0.052 4.052 15 H 0.145 0.855 16 C -0.031 4.031 17 N -0.281 5.281 18 N -0.190 5.190 19 H 0.302 0.698 20 N -0.137 5.137 21 C 0.116 3.884 22 C -0.599 4.599 23 H 0.049 0.951 24 C -0.175 4.175 25 N -0.573 5.573 26 Si 0.768 3.232 27 H -0.178 1.178 28 H -0.213 1.213 29 H -0.158 1.158 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.132 0.868 33 H 0.188 0.812 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.106 0.894 42 H 0.161 0.839 43 H 0.084 0.916 44 H 0.106 0.894 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.098 12.165 11.898 19.295 hybrid contribution -1.041 -1.303 -1.226 2.070 sum 8.057 10.861 10.671 17.227 Atomic orbital electron populations 1.20794 0.83667 1.05821 1.04886 1.21807 0.95954 0.84531 0.90367 1.22090 0.91537 1.00184 1.24277 1.18905 0.91507 0.82574 0.84809 1.68080 1.28387 1.03990 1.47223 1.16838 0.83077 0.85253 0.77166 1.90691 1.25429 1.78897 1.59593 1.46865 1.05087 1.05247 1.76917 1.22402 1.01916 0.79070 0.99648 1.23263 0.87560 1.00624 0.93438 0.85350 1.22200 0.98385 0.96890 0.97526 1.22201 0.97775 0.97410 0.97549 1.23281 0.99383 0.88839 0.93693 0.85520 1.22451 0.81622 0.99993 0.98998 1.63932 1.24512 1.14122 1.25549 1.44281 0.98765 1.04570 1.71406 0.69814 1.47325 0.93232 1.07400 1.65758 1.20207 0.97650 0.73123 0.97376 1.21335 1.47595 0.99108 0.91907 0.95087 1.25797 0.93458 0.99583 0.98665 1.70033 1.44868 1.20338 1.22015 0.85750 0.80776 0.77622 0.79081 1.17782 1.21279 1.15775 0.89178 0.88853 0.86754 0.81241 0.90918 0.91204 0.89977 0.94046 0.93659 0.90113 0.91786 0.89353 0.83900 0.91606 0.89364 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.46 10.09 71.23 0.72 -1.74 16 2 C 0.20 6.90 6.92 41.08 0.28 7.18 16 3 C -0.35 -13.65 9.41 22.25 0.21 -13.44 16 4 C 0.48 18.90 8.07 133.95 1.08 19.98 16 5 N -0.71 -28.42 9.10 -322.56 -2.94 -31.35 16 6 C 0.68 27.20 8.22 179.35 1.47 28.67 16 7 O -0.66 -29.93 12.72 -4.79 -0.06 -29.99 16 8 N -0.61 -18.89 2.25 -833.58 -1.88 -20.77 16 9 C 0.09 2.43 5.69 86.56 0.49 2.92 16 10 C 0.06 1.22 4.59 45.39 0.21 1.43 16 11 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 12 C -0.11 -2.49 6.18 31.55 0.19 -2.30 16 13 C -0.11 -2.46 6.18 31.55 0.19 -2.26 16 14 C 0.06 1.15 4.59 45.38 0.21 1.36 16 15 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 16 C 0.09 2.35 5.68 86.55 0.49 2.85 16 17 N -0.65 -11.77 7.39 -452.93 -3.35 -15.12 16 18 N -0.47 -16.61 7.38 -54.78 -0.40 -17.01 16 19 H 0.45 13.89 8.96 -213.28 -1.91 11.98 16 20 N -0.35 -12.73 3.63 -337.55 -1.23 -13.96 16 21 C 0.23 8.65 5.00 85.63 0.43 9.08 16 22 C -0.56 -27.27 9.94 25.60 0.25 -27.02 16 23 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 24 C 0.03 1.28 5.47 84.65 0.46 1.74 16 25 N -0.93 -52.20 13.96 21.45 0.30 -51.91 16 26 Si 0.95 35.23 27.47 68.60 1.88 37.12 16 27 H -0.25 -8.86 7.11 99.48 0.71 -8.15 16 28 H -0.29 -11.10 7.11 99.48 0.71 -10.39 16 29 H -0.23 -7.55 6.54 99.48 0.65 -6.90 16 30 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.09 2.16 7.14 -2.38 -0.02 2.15 16 32 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.17 7.14 5.77 -2.91 -0.02 7.12 16 34 H 0.07 2.20 7.10 -2.39 -0.02 2.18 16 35 H 0.07 1.60 8.13 -2.39 -0.02 1.58 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.04 1.16 7.84 -2.38 -0.02 1.14 16 38 H 0.04 1.24 7.84 -2.39 -0.02 1.22 16 39 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.06 1.46 8.13 -2.39 -0.02 1.45 16 41 H 0.09 2.52 6.96 -2.39 -0.02 2.50 16 42 H 0.34 5.49 8.35 -89.69 -0.75 4.74 16 43 H 0.07 2.24 7.20 -2.39 -0.02 2.22 16 44 H 0.09 2.81 6.61 -2.39 -0.02 2.79 16 45 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -69.32 355.94 -2.65 -71.97 By element: Atomic # 1 Polarization: 44.26 SS G_CDS: -1.68 Total: 42.58 kcal Atomic # 6 Polarization: 21.74 SS G_CDS: 6.70 Total: 28.44 kcal Atomic # 7 Polarization: -140.63 SS G_CDS: -9.49 Total: -150.12 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.06 Total: -29.99 kcal Atomic # 14 Polarization: 35.23 SS G_CDS: 1.88 Total: 37.12 kcal Total: -69.32 -2.65 -71.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601563731.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.165 kcal (2) G-P(sol) polarization free energy of solvation -69.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds