Wall clock time and date at job start Fri Apr 10 2020 18:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47266 * 2 1 4 4 O 1.42898 * 109.47223 * 120.00204 * 2 1 3 5 5 C 1.35677 * 116.99954 * 270.00387 * 4 2 1 6 6 C 1.38920 * 119.68501 * 179.97438 * 5 4 2 7 7 C 1.38382 * 119.11012 * 179.74391 * 6 5 4 8 8 C 1.38823 * 118.48578 * 0.53373 * 7 6 5 9 9 C 1.38046 * 119.29092 * 359.46586 * 8 7 6 10 10 N 1.31969 * 120.83242 * 0.27283 * 9 8 7 11 11 C 1.50703 * 109.47242 * 240.00217 * 2 1 3 12 12 O 1.21284 * 119.99850 * 245.00074 * 11 2 1 13 13 N 1.34774 * 120.00133 * 64.99835 * 11 2 1 14 14 C 1.47084 * 120.87913 * 359.72415 * 13 11 2 15 15 C 1.53695 * 108.27413 * 128.75401 * 14 13 11 16 16 N 1.46898 * 109.25574 * 54.08156 * 15 14 13 17 17 C 1.46901 * 110.99813 * 172.60524 * 16 15 14 18 18 C 1.50704 * 109.47197 * 59.38471 * 17 16 15 19 19 H 1.08005 * 119.99975 * 5.01730 * 18 17 16 20 20 C 1.37873 * 120.00040 * 185.01973 * 18 17 16 21 21 N 1.31513 * 120.00005 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99922 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47225 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47234 * 119.99967 * 22 20 18 25 25 H 1.48499 * 109.47463 * 239.99735 * 22 20 18 26 26 C 1.46897 * 111.27279 * 296.75214 * 16 15 14 27 27 C 1.47073 * 120.88234 * 180.02562 * 13 11 2 28 28 H 1.09001 * 109.47266 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47299 * 299.99953 * 1 2 3 30 30 H 1.09002 * 109.47080 * 59.99758 * 1 2 3 31 31 H 1.08001 * 120.44366 * 359.97438 * 6 5 4 32 32 H 1.08003 * 120.75316 * 180.30015 * 7 6 5 33 33 H 1.08004 * 120.35786 * 179.72973 * 8 7 6 34 34 H 1.07995 * 119.58426 * 180.25021 * 9 8 7 35 35 H 1.08999 * 109.62401 * 248.52185 * 14 13 11 36 36 H 1.09002 * 109.62676 * 9.10445 * 14 13 11 37 37 H 1.08994 * 109.64948 * 294.07592 * 15 14 13 38 38 H 1.08995 * 109.41900 * 173.94601 * 15 14 13 39 39 H 1.09000 * 109.47352 * 179.38498 * 17 16 15 40 40 H 1.09004 * 109.47563 * 299.38309 * 17 16 15 41 41 H 0.97002 * 119.99597 * 180.02562 * 21 20 18 42 42 H 1.09000 * 109.49446 * 303.15351 * 26 16 15 43 43 H 1.08998 * 109.49721 * 183.06313 * 26 16 15 44 44 H 1.09006 * 109.62873 * 350.89499 * 27 13 11 45 45 H 1.09003 * 109.63194 * 111.47881 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2116 0.0829 2.2741 6 6 2.6736 -0.5151 3.4398 7 6 2.8839 0.2687 4.5608 8 6 2.6126 1.6277 4.4789 9 6 2.1553 2.1545 3.2877 10 7 1.9695 1.3824 2.2337 11 6 2.0323 -0.7104 -1.2305 12 8 2.6530 -1.7467 -1.1215 13 7 1.7919 -0.1941 -2.4520 14 6 1.0361 1.0581 -2.6069 15 6 1.8491 2.0037 -3.5053 16 7 2.1757 1.3165 -4.7619 17 6 2.7996 2.2391 -5.7197 18 6 4.0618 2.8057 -5.1222 19 1 4.4131 2.4499 -4.1649 20 6 4.7680 3.7783 -5.7976 21 7 4.3405 4.2113 -6.9635 22 14 6.3321 4.4811 -5.0567 23 1 6.5950 3.8315 -3.7474 24 1 7.4721 4.2268 -5.9738 25 1 6.1725 5.9443 -4.8595 26 6 3.0323 0.1473 -4.5228 27 6 2.2726 -0.8715 -3.6658 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 2.8697 -1.5767 3.4697 32 1 3.2473 -0.1677 5.4795 33 1 2.7618 2.2667 5.3367 34 1 1.9466 3.2118 3.2175 35 1 0.0713 0.8486 -3.0688 36 1 0.8856 1.5181 -1.6303 37 1 2.7699 2.2902 -2.9975 38 1 1.2596 2.8949 -3.7207 39 1 3.0411 1.7021 -6.6370 40 1 2.1082 3.0510 -5.9454 41 1 4.8376 4.8953 -7.4388 42 1 3.9367 0.4596 -4.0007 43 1 3.3009 -0.3079 -5.4761 44 1 2.9401 -1.6878 -3.3896 45 1 1.4242 -1.2625 -4.2274 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602200373.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:55 Heat of formation + Delta-G solvation = -14.964138 kcal Electronic energy + Delta-G solvation = -27169.416629 eV Core-core repulsion = 23380.996193 eV Total energy + Delta-G solvation = -3788.420436 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.01290 -40.00237 -38.19575 -37.22048 -34.61789 -32.83617 -32.65724 -32.08826 -30.66942 -29.99717 -28.16176 -25.72052 -24.77743 -23.84630 -23.38346 -22.97174 -22.03229 -20.45400 -18.90566 -18.71793 -17.24483 -16.76160 -16.35772 -16.15702 -15.93506 -15.73158 -14.96761 -14.81962 -14.69344 -14.44279 -14.20374 -13.81661 -13.73455 -13.52625 -13.31297 -13.22716 -12.67905 -12.53967 -12.26310 -12.09964 -11.90053 -11.80722 -11.30913 -11.17583 -11.04331 -11.02790 -10.68533 -10.65444 -10.30171 -10.20760 -9.93508 -9.84785 -9.70833 -9.51324 -8.73034 -8.50036 -8.48142 -7.30718 -6.09635 -4.19008 0.90879 1.01577 2.44067 2.66083 3.22387 3.31094 3.35064 3.38047 3.54505 4.03402 4.35662 4.38896 4.58962 4.74364 4.80822 4.81053 4.87617 4.96067 5.01218 5.20466 5.25995 5.36925 5.44685 5.47025 5.48606 5.61074 5.66749 5.70679 5.83694 5.87631 5.92568 5.98308 6.06053 6.17155 6.37544 6.57505 6.65895 6.68798 7.03218 7.15959 7.44675 7.48983 7.61059 7.82255 7.92058 8.14298 8.20410 8.23392 8.90991 9.48707 10.95539 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.013247 B = 0.003437 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.135271 B = 8145.127221 C = 9403.286375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.073 3.927 3 H 0.115 0.885 4 O -0.276 6.276 5 C 0.325 3.675 6 C -0.190 4.190 7 C -0.041 4.041 8 C -0.217 4.217 9 C 0.142 3.858 10 N -0.541 5.541 11 C 0.517 3.483 12 O -0.532 6.532 13 N -0.600 5.600 14 C 0.101 3.899 15 C 0.050 3.950 16 N -0.540 5.540 17 C 0.187 3.813 18 C -0.552 4.552 19 H 0.056 0.944 20 C 0.066 3.934 21 N -0.889 5.889 22 Si 0.888 3.112 23 H -0.274 1.274 24 H -0.282 1.282 25 H -0.283 1.283 26 C 0.049 3.951 27 C 0.117 3.883 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.160 0.840 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.045 0.955 38 H 0.081 0.919 39 H 0.029 0.971 40 H 0.037 0.963 41 H 0.262 0.738 42 H 0.042 0.958 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.290 -5.770 20.057 22.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.013 3.987 3 H 0.132 0.868 4 O -0.182 6.182 5 C 0.146 3.854 6 C -0.211 4.211 7 C -0.066 4.066 8 C -0.237 4.237 9 C -0.014 4.014 10 N -0.265 5.265 11 C 0.303 3.697 12 O -0.409 6.409 13 N -0.334 5.334 14 C -0.022 4.022 15 C -0.080 4.080 16 N -0.265 5.265 17 C 0.062 3.938 18 C -0.591 4.591 19 H 0.074 0.926 20 C -0.136 4.136 21 N -0.528 5.528 22 Si 0.716 3.284 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.081 4.081 27 C -0.005 4.005 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.154 0.846 34 H 0.178 0.822 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.099 0.901 39 H 0.048 0.952 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.625 -6.310 18.905 21.717 hybrid contribution 2.010 0.800 1.311 2.530 sum -6.615 -5.510 20.216 21.973 Atomic orbital electron populations 1.22324 0.92384 1.03749 1.04230 1.22077 0.95815 0.98108 0.82653 0.86754 1.86371 1.79743 1.34448 1.17636 1.19928 0.90958 0.87421 0.87061 1.21094 1.06261 1.02256 0.91463 1.21415 0.94129 0.93465 0.97634 1.21982 1.05451 0.96229 1.00020 1.22456 0.92427 0.99262 0.87234 1.67285 1.21890 1.04714 1.32615 1.20117 0.80114 0.85358 0.84110 1.90695 1.40525 1.23571 1.86091 1.48060 1.54960 1.25114 1.05305 1.22349 0.95529 0.84017 1.00297 1.22319 0.98882 0.95604 0.91171 1.62498 1.44283 1.09073 1.10598 1.19775 0.92875 0.90624 0.90512 1.21768 1.09707 1.21914 1.05687 0.92578 1.24945 0.97607 0.96328 0.94765 1.69946 1.39351 1.29659 1.13807 0.86607 0.83547 0.78954 0.79341 1.19912 1.20851 1.20859 1.22275 0.94760 0.92016 0.99012 1.21878 0.99121 0.95614 0.83868 0.91304 0.90872 0.89476 0.83988 0.84175 0.84562 0.82248 0.90492 0.89899 0.93670 0.90099 0.95241 0.94508 0.92784 0.93980 0.90208 0.89416 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 9.12 37.16 0.34 -1.51 16 2 C 0.07 1.03 2.07 -27.88 -0.06 0.97 16 3 H 0.11 1.60 6.26 -51.93 -0.32 1.28 16 4 O -0.28 -4.16 9.30 -38.59 -0.36 -4.52 16 5 C 0.33 4.25 7.45 -17.12 -0.13 4.13 16 6 C -0.19 -2.00 10.04 -39.28 -0.39 -2.39 16 7 C -0.04 -0.33 10.17 -39.31 -0.40 -0.72 16 8 C -0.22 -1.65 10.10 -39.44 -0.40 -2.05 16 9 C 0.14 1.32 11.18 -17.56 -0.20 1.12 16 10 N -0.54 -6.63 8.65 -13.33 -0.12 -6.75 16 11 C 0.52 8.63 7.13 -10.98 -0.08 8.55 16 12 O -0.53 -10.70 15.96 -14.31 -0.23 -10.92 16 13 N -0.60 -9.47 3.00 -172.15 -0.52 -9.98 16 14 C 0.10 1.40 5.10 -3.36 -0.02 1.39 16 15 C 0.05 0.89 5.17 -3.46 -0.02 0.87 16 16 N -0.54 -10.91 4.83 -235.44 -1.14 -12.05 16 17 C 0.19 4.62 5.11 -4.97 -0.03 4.60 16 18 C -0.55 -14.79 7.75 -34.44 -0.27 -15.06 16 19 H 0.06 1.52 5.88 -52.48 -0.31 1.22 16 20 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 21 N -0.89 -25.62 13.29 55.43 0.74 -24.89 16 22 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 C 0.05 0.92 5.24 -3.68 -0.02 0.90 16 27 C 0.12 1.91 6.60 -3.58 -0.02 1.88 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.09 0.83 5.43 -51.93 -0.28 0.55 16 31 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 33 H 0.14 0.66 8.06 -52.48 -0.42 0.23 16 34 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.08 0.96 8.13 -51.93 -0.42 0.54 16 36 H 0.08 0.97 4.83 -51.93 -0.25 0.72 16 37 H 0.05 0.92 6.79 -51.93 -0.35 0.57 16 38 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 39 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 40 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.04 0.90 6.92 -51.93 -0.36 0.54 16 43 H 0.08 1.48 8.05 -51.93 -0.42 1.06 16 44 H 0.09 1.46 7.06 -51.93 -0.37 1.09 16 45 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 362.21 15.07 5.46 5.46 Total: -1.00 -32.79 362.21 -9.41 -42.20 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.44 Total: 0.77 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -1.78 Total: 4.41 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -1.03 Total: -53.67 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.59 Total: -15.44 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.79 -9.41 -42.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602200373.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.232 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds