Wall clock time and date at job start Fri Apr 10 2020 18:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47266 * 2 1 4 4 O 1.42898 * 109.47223 * 120.00204 * 2 1 3 5 5 C 1.35677 * 116.99954 * 270.00387 * 4 2 1 6 6 C 1.38920 * 119.68501 * 179.97438 * 5 4 2 7 7 C 1.38382 * 119.11012 * 179.74391 * 6 5 4 8 8 C 1.38823 * 118.48578 * 0.53373 * 7 6 5 9 9 C 1.38046 * 119.29092 * 359.46586 * 8 7 6 10 10 N 1.31969 * 120.83242 * 0.27283 * 9 8 7 11 11 C 1.50703 * 109.47242 * 240.00217 * 2 1 3 12 12 O 1.21284 * 119.99850 * 245.00074 * 11 2 1 13 13 N 1.34774 * 120.00133 * 64.99835 * 11 2 1 14 14 C 1.47084 * 120.87913 * 359.72415 * 13 11 2 15 15 C 1.53695 * 108.27413 * 128.75401 * 14 13 11 16 16 N 1.46898 * 109.25574 * 54.08156 * 15 14 13 17 17 C 1.46901 * 110.99813 * 172.60524 * 16 15 14 18 18 C 1.50704 * 109.47197 * 59.38471 * 17 16 15 19 19 H 1.08005 * 119.99975 * 5.01730 * 18 17 16 20 20 C 1.37873 * 120.00040 * 185.01973 * 18 17 16 21 21 N 1.31513 * 120.00005 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99922 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47225 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47234 * 119.99967 * 22 20 18 25 25 H 1.48499 * 109.47463 * 239.99735 * 22 20 18 26 26 C 1.46897 * 111.27279 * 296.75214 * 16 15 14 27 27 C 1.47073 * 120.88234 * 180.02562 * 13 11 2 28 28 H 1.09001 * 109.47266 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47299 * 299.99953 * 1 2 3 30 30 H 1.09002 * 109.47080 * 59.99758 * 1 2 3 31 31 H 1.08001 * 120.44366 * 359.97438 * 6 5 4 32 32 H 1.08003 * 120.75316 * 180.30015 * 7 6 5 33 33 H 1.08004 * 120.35786 * 179.72973 * 8 7 6 34 34 H 1.07995 * 119.58426 * 180.25021 * 9 8 7 35 35 H 1.08999 * 109.62401 * 248.52185 * 14 13 11 36 36 H 1.09002 * 109.62676 * 9.10445 * 14 13 11 37 37 H 1.08994 * 109.64948 * 294.07592 * 15 14 13 38 38 H 1.08995 * 109.41900 * 173.94601 * 15 14 13 39 39 H 1.09000 * 109.47352 * 179.38498 * 17 16 15 40 40 H 1.09004 * 109.47563 * 299.38309 * 17 16 15 41 41 H 0.97002 * 119.99597 * 180.02562 * 21 20 18 42 42 H 1.09000 * 109.49446 * 303.15351 * 26 16 15 43 43 H 1.08998 * 109.49721 * 183.06313 * 26 16 15 44 44 H 1.09006 * 109.62873 * 350.89499 * 27 13 11 45 45 H 1.09003 * 109.63194 * 111.47881 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2116 0.0829 2.2741 6 6 2.6736 -0.5151 3.4398 7 6 2.8839 0.2687 4.5608 8 6 2.6126 1.6277 4.4789 9 6 2.1553 2.1545 3.2877 10 7 1.9695 1.3824 2.2337 11 6 2.0323 -0.7104 -1.2305 12 8 2.6530 -1.7467 -1.1215 13 7 1.7919 -0.1941 -2.4520 14 6 1.0361 1.0581 -2.6069 15 6 1.8491 2.0037 -3.5053 16 7 2.1757 1.3165 -4.7619 17 6 2.7996 2.2391 -5.7197 18 6 4.0618 2.8057 -5.1222 19 1 4.4131 2.4499 -4.1649 20 6 4.7680 3.7783 -5.7976 21 7 4.3405 4.2113 -6.9635 22 14 6.3321 4.4811 -5.0567 23 1 6.5950 3.8315 -3.7474 24 1 7.4721 4.2268 -5.9738 25 1 6.1725 5.9443 -4.8595 26 6 3.0323 0.1473 -4.5228 27 6 2.2726 -0.8715 -3.6658 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 2.8697 -1.5767 3.4697 32 1 3.2473 -0.1677 5.4795 33 1 2.7618 2.2667 5.3367 34 1 1.9466 3.2118 3.2175 35 1 0.0713 0.8486 -3.0688 36 1 0.8856 1.5181 -1.6303 37 1 2.7699 2.2902 -2.9975 38 1 1.2596 2.8949 -3.7207 39 1 3.0411 1.7021 -6.6370 40 1 2.1082 3.0510 -5.9454 41 1 4.8376 4.8953 -7.4388 42 1 3.9367 0.4596 -4.0007 43 1 3.3009 -0.3079 -5.4761 44 1 2.9401 -1.6878 -3.3896 45 1 1.4242 -1.2625 -4.2274 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602200373.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:54 Heat of formation + Delta-G solvation = -37.900563 kcal Electronic energy + Delta-G solvation = -27170.411227 eV Core-core repulsion = 23380.996193 eV Total energy + Delta-G solvation = -3789.415034 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.98167 -41.12738 -39.37791 -38.53133 -36.19584 -34.50464 -33.55111 -33.33185 -31.85247 -30.92461 -29.85445 -27.39262 -25.92600 -24.81469 -24.54356 -24.21438 -23.45562 -21.86255 -20.28070 -19.64626 -18.63343 -18.15207 -17.77978 -17.10187 -16.88636 -16.76275 -16.70383 -16.12510 -15.99991 -15.60965 -15.47282 -15.30840 -15.09007 -14.63890 -14.45859 -14.13401 -13.99205 -13.78119 -13.58505 -13.28680 -13.14581 -12.98483 -12.83028 -12.77042 -12.58610 -12.42131 -12.30179 -12.18374 -11.96159 -11.82115 -11.64075 -10.93329 -10.83315 -10.63947 -10.58359 -9.86490 -9.51001 -9.09281 -8.19987 -6.38634 0.19312 0.32038 1.31102 1.33849 1.34217 1.40681 1.44126 2.29236 2.33148 2.81707 3.05380 3.21049 3.27666 3.28794 3.82189 3.90777 3.95502 4.03966 4.05030 4.11129 4.19990 4.22549 4.31391 4.36952 4.46900 4.56222 4.63337 4.67075 4.72711 4.80003 4.84512 5.01302 5.05733 5.08098 5.14131 5.19066 5.28052 5.30569 5.36724 5.53156 5.70828 5.96416 6.09946 6.17730 6.29976 6.41674 6.81566 6.83957 6.94893 7.32925 8.82611 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.013247 B = 0.003437 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.135271 B = 8145.127221 C = 9403.286375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.079 3.921 3 H 0.113 0.887 4 O -0.302 6.302 5 C 0.291 3.709 6 C -0.204 4.204 7 C -0.036 4.036 8 C -0.203 4.203 9 C 0.125 3.875 10 N -0.562 5.562 11 C 0.513 3.487 12 O -0.573 6.573 13 N -0.601 5.601 14 C 0.111 3.889 15 C 0.049 3.951 16 N -0.533 5.533 17 C 0.201 3.799 18 C -0.558 4.558 19 H 0.047 0.953 20 C 0.018 3.982 21 N -0.921 5.921 22 Si 0.951 3.049 23 H -0.276 1.276 24 H -0.278 1.278 25 H -0.273 1.273 26 C 0.054 3.946 27 C 0.126 3.874 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.145 0.855 32 H 0.175 0.825 33 H 0.172 0.828 34 H 0.184 0.816 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.017 0.983 38 H 0.086 0.914 39 H 0.007 0.993 40 H 0.018 0.982 41 H 0.266 0.734 42 H 0.011 0.989 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.994 -5.032 22.625 24.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.019 3.981 3 H 0.130 0.870 4 O -0.209 6.209 5 C 0.113 3.887 6 C -0.225 4.225 7 C -0.062 4.062 8 C -0.223 4.223 9 C -0.030 4.030 10 N -0.286 5.286 11 C 0.301 3.699 12 O -0.452 6.452 13 N -0.334 5.334 14 C -0.011 4.011 15 C -0.080 4.080 16 N -0.257 5.257 17 C 0.074 3.926 18 C -0.597 4.597 19 H 0.066 0.934 20 C -0.182 4.182 21 N -0.560 5.560 22 Si 0.776 3.224 23 H -0.201 1.201 24 H -0.203 1.203 25 H -0.198 1.198 26 C -0.075 4.075 27 C 0.004 3.996 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.122 0.878 31 H 0.163 0.837 32 H 0.192 0.808 33 H 0.189 0.811 34 H 0.201 0.799 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.035 0.965 38 H 0.105 0.895 39 H 0.025 0.975 40 H 0.036 0.964 41 H 0.075 0.925 42 H 0.029 0.971 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.349 -5.555 21.488 24.083 hybrid contribution 2.256 0.607 0.601 2.412 sum -7.093 -4.948 22.089 23.722 Atomic orbital electron populations 1.22287 0.89919 1.04012 1.05428 1.22043 0.97503 0.97065 0.81464 0.86989 1.86321 1.80669 1.35613 1.18346 1.20210 0.93249 0.88093 0.87150 1.21355 1.06516 1.02921 0.91692 1.21869 0.92853 0.93569 0.97865 1.22413 1.03066 0.96477 1.00365 1.23028 0.92425 1.00228 0.87304 1.67225 1.22633 1.04619 1.34149 1.20693 0.79240 0.84968 0.84979 1.90666 1.42329 1.25529 1.86704 1.48155 1.54756 1.25480 1.05028 1.22437 0.95276 0.82379 1.00990 1.22394 0.98374 0.96950 0.90330 1.62444 1.43426 1.08578 1.11249 1.19443 0.91942 0.90435 0.90765 1.21961 1.10488 1.21898 1.05304 0.93435 1.25701 1.00595 0.96790 0.95161 1.70041 1.40733 1.30331 1.14924 0.85622 0.79898 0.78500 0.78333 1.20110 1.20331 1.19843 1.22242 0.93878 0.92159 0.99260 1.21743 0.99566 0.94414 0.83891 0.91511 0.89991 0.87780 0.83730 0.80765 0.81081 0.79867 0.87722 0.87163 0.96503 0.89546 0.97494 0.96431 0.92475 0.97085 0.90206 0.89915 0.88714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 9.12 71.98 0.66 -2.54 16 2 C 0.08 2.18 2.07 29.85 0.06 2.24 16 3 H 0.11 3.09 6.26 -2.39 -0.01 3.07 16 4 O -0.30 -9.25 9.30 -70.95 -0.66 -9.91 16 5 C 0.29 7.55 7.45 84.79 0.63 8.18 16 6 C -0.20 -4.13 10.04 22.47 0.23 -3.91 16 7 C -0.04 -0.48 10.17 22.44 0.23 -0.25 16 8 C -0.20 -2.43 10.10 22.36 0.23 -2.20 16 9 C 0.13 2.05 11.18 84.63 0.95 2.99 16 10 N -0.56 -13.24 8.65 -308.95 -2.67 -15.92 16 11 C 0.51 17.09 7.13 87.66 0.62 17.72 16 12 O -0.57 -23.50 15.96 15.95 0.25 -23.25 16 13 N -0.60 -18.47 3.00 -816.96 -2.45 -20.92 16 14 C 0.11 2.88 5.10 86.50 0.44 3.32 16 15 C 0.05 1.73 5.17 86.54 0.45 2.17 16 16 N -0.53 -21.72 4.83 -898.81 -4.34 -26.06 16 17 C 0.20 10.18 5.11 85.56 0.44 10.62 16 18 C -0.56 -30.59 7.75 25.60 0.20 -30.39 16 19 H 0.05 2.65 5.88 -2.91 -0.02 2.64 16 20 C 0.02 0.98 5.46 84.65 0.46 1.44 16 21 N -0.92 -53.75 13.29 21.45 0.28 -53.46 16 22 Si 0.95 44.09 29.54 68.60 2.03 46.11 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 24 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 25 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 26 C 0.05 2.08 5.24 86.40 0.45 2.54 16 27 C 0.13 4.05 6.60 86.36 0.57 4.62 16 28 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.10 1.67 5.43 -2.39 -0.01 1.66 16 31 H 0.14 2.68 8.06 -2.91 -0.02 2.65 16 32 H 0.17 1.02 8.06 -2.91 -0.02 0.99 16 33 H 0.17 0.82 8.06 -2.91 -0.02 0.80 16 34 H 0.18 1.90 8.06 -2.91 -0.02 1.87 16 35 H 0.10 2.25 8.13 -2.39 -0.02 2.23 16 36 H 0.11 2.31 4.83 -2.39 -0.01 2.30 16 37 H 0.02 0.69 6.79 -2.39 -0.02 0.67 16 38 H 0.09 2.96 8.11 -2.39 -0.02 2.94 16 39 H 0.01 0.38 8.07 -2.39 -0.02 0.36 16 40 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 42 H 0.01 0.49 6.92 -2.39 -0.02 0.47 16 43 H 0.08 3.04 8.05 -2.39 -0.02 3.02 16 44 H 0.08 2.78 7.06 -2.38 -0.02 2.76 16 45 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -73.64 362.21 0.05 -73.59 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 1.00 Total: 13.26 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 6.61 Total: 16.55 kcal Atomic # 7 Polarization: -107.18 SS G_CDS: -9.18 Total: -116.36 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -0.41 Total: -33.15 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -73.64 0.05 -73.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602200373.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.694 kcal (2) G-P(sol) polarization free energy of solvation -73.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds