Wall clock time and date at job start Fri Apr 10 2020 18:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00235 * 2 1 4 4 H 1.48506 * 109.47276 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46969 * 299.99634 * 3 2 1 6 6 H 1.48498 * 109.47322 * 60.00111 * 3 2 1 7 7 C 1.37884 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99365 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99862 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46834 * 175.03791 * 9 7 2 11 11 C 1.46902 * 110.99875 * 295.08165 * 10 9 7 12 12 C 1.53237 * 109.34123 * 187.25782 * 11 10 9 13 13 N 1.47079 * 108.51898 * 306.17064 * 12 11 10 14 14 C 1.34783 * 120.88199 * 231.18699 * 13 12 11 15 15 O 1.21279 * 119.99729 * 5.36705 * 14 13 12 16 16 C 1.50694 * 120.00032 * 185.36770 * 14 13 12 17 17 H 1.09010 * 109.69324 * 24.70607 * 16 14 13 18 18 C 1.53431 * 109.73128 * 264.13727 * 16 14 13 19 19 C 1.53110 * 109.55404 * 190.55657 * 18 16 14 20 20 C 1.53204 * 109.78347 * 69.84880 * 19 18 16 21 21 C 1.50592 * 108.41419 * 310.55648 * 20 19 18 22 22 N 1.32911 * 129.16265 * 195.93535 * 21 20 19 23 23 N 1.29022 * 108.63608 * 179.80064 * 22 21 20 24 24 N 1.29110 * 110.25602 * 0.02562 * 23 22 21 25 25 H 0.96998 * 126.00484 * 180.02562 * 24 23 22 26 26 C 1.34395 * 107.98541 * 0.31836 * 24 23 22 27 27 C 1.47078 * 118.23945 * 51.45957 * 13 12 11 28 28 C 1.46896 * 111.00221 * 59.38845 * 10 9 7 29 29 H 0.97004 * 119.99754 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47197 * 55.03493 * 9 7 2 31 31 H 1.09005 * 109.46868 * 295.03142 * 9 7 2 32 32 H 1.09006 * 109.48853 * 67.29908 * 11 10 9 33 33 H 1.08993 * 109.49388 * 307.22104 * 11 10 9 34 34 H 1.08999 * 109.62600 * 186.46639 * 12 11 10 35 35 H 1.08994 * 109.78980 * 65.97384 * 12 11 10 36 36 H 1.09001 * 109.45496 * 310.58309 * 18 16 14 37 37 H 1.09008 * 109.45759 * 70.53321 * 18 16 14 38 38 H 1.09003 * 109.45330 * 190.10627 * 19 18 16 39 39 H 1.08992 * 109.45463 * 310.06610 * 19 18 16 40 40 H 1.09000 * 110.16492 * 190.51881 * 20 19 18 41 41 H 1.08999 * 109.14172 * 69.99747 * 20 19 18 42 42 H 1.09006 * 109.62727 * 68.24615 * 27 13 12 43 43 H 1.09001 * 109.63481 * 188.83056 * 27 13 12 44 44 H 1.09006 * 109.49351 * 292.70025 * 28 10 9 45 45 H 1.08991 * 109.49745 * 52.76228 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2011 -3.6132 -0.1186 11 6 2.8903 -3.5808 -1.4156 12 6 3.7324 -4.8511 -1.5746 13 7 4.6147 -4.9762 -0.4045 14 6 5.9395 -5.1735 -0.5548 15 8 6.4337 -5.1529 -1.6621 16 6 6.8065 -5.4196 0.6529 17 1 6.2022 -5.8320 1.4610 18 6 7.4477 -4.1020 1.1074 19 6 8.5231 -4.3911 2.1583 20 6 9.7178 -5.0881 1.4994 21 6 9.2020 -6.2359 0.6723 22 7 9.8652 -7.2711 0.1671 23 7 9.0333 -8.0207 -0.4736 24 7 7.8439 -7.5220 -0.4130 25 1 7.0460 -7.8998 -0.8149 26 6 7.9069 -6.3841 0.2993 27 6 4.0120 -4.8866 0.9342 28 6 3.1596 -3.6090 0.9945 29 1 -0.4850 0.8401 -0.0004 30 1 0.5596 -2.5195 -0.8419 31 1 0.6923 -2.5961 0.9315 32 1 3.5392 -2.7061 -1.4608 33 1 2.1540 -3.5297 -2.2176 34 1 4.3340 -4.7804 -2.4808 35 1 3.0794 -5.7216 -1.6356 36 1 7.9019 -3.6046 0.2504 37 1 6.6830 -3.4558 1.5387 38 1 8.8509 -3.4545 2.6094 39 1 8.1110 -5.0411 2.9300 40 1 10.4014 -5.4625 2.2614 41 1 10.2370 -4.3767 0.8572 42 1 3.3828 -5.7588 1.1116 43 1 4.7984 -4.8395 1.6875 44 1 3.8048 -2.7340 0.9156 45 1 2.6187 -3.5781 1.9402 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602202511.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:00 Heat of formation + Delta-G solvation = 61.385968 kcal Electronic energy + Delta-G solvation = -27733.417054 eV Core-core repulsion = 23980.600159 eV Total energy + Delta-G solvation = -3752.816896 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.65349 -40.34513 -37.90271 -36.95488 -34.64829 -34.00579 -32.46164 -31.35698 -30.48756 -30.23174 -28.26198 -25.71774 -24.79263 -23.54479 -23.18126 -22.91371 -22.38461 -20.77029 -19.86585 -19.03946 -18.04080 -17.63965 -16.45751 -16.25105 -15.81175 -15.49969 -14.97097 -14.89736 -14.58619 -14.39663 -14.11985 -14.02084 -13.89201 -13.67020 -13.47922 -12.87477 -12.57942 -12.22823 -12.00518 -11.82702 -11.65895 -11.58182 -11.33237 -11.28169 -11.21750 -11.13145 -10.86930 -10.77858 -10.75250 -10.52161 -10.37900 -10.04483 -9.84652 -9.73257 -9.06235 -8.65836 -8.56169 -7.40511 -6.16121 -4.25972 1.35503 2.33089 2.36102 2.53351 2.90781 3.17738 3.26911 3.29142 3.91355 4.23011 4.24887 4.29700 4.44898 4.57101 4.69580 4.81672 4.88591 5.01422 5.10999 5.14245 5.16515 5.30097 5.33481 5.41464 5.53913 5.55199 5.60834 5.70120 5.73435 5.76262 5.82439 5.91284 5.95685 6.02936 6.25265 6.43911 6.53026 6.57870 6.62983 7.07218 7.31858 7.37023 7.74520 7.82671 7.99766 8.04284 8.12850 8.27849 8.83654 9.42135 10.89189 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.019841 B = 0.003344 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.883133 B = 8370.608064 C = 9130.611450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.067 3.933 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.554 4.554 8 H 0.057 0.943 9 C 0.188 3.812 10 N -0.541 5.541 11 C 0.051 3.949 12 C 0.113 3.887 13 N -0.600 5.600 14 C 0.512 3.488 15 O -0.540 6.540 16 C -0.035 4.035 17 H 0.114 0.886 18 C -0.107 4.107 19 C -0.117 4.117 20 C -0.035 4.035 21 C -0.011 4.011 22 N -0.260 5.260 23 N -0.088 5.088 24 N -0.371 5.371 25 H 0.447 0.553 26 C 0.012 3.988 27 C 0.103 3.897 28 C 0.049 3.951 29 H 0.263 0.737 30 H 0.036 0.964 31 H 0.030 0.970 32 H 0.044 0.956 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.046 0.954 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.078 -11.338 5.218 17.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.593 4.593 8 H 0.075 0.925 9 C 0.062 3.938 10 N -0.265 5.265 11 C -0.079 4.079 12 C -0.009 4.009 13 N -0.333 5.333 14 C 0.298 3.702 15 O -0.418 6.418 16 C -0.059 4.059 17 H 0.131 0.869 18 C -0.146 4.146 19 C -0.155 4.155 20 C -0.074 4.074 21 C -0.151 4.151 22 N -0.126 5.126 23 N -0.067 5.067 24 N -0.089 5.089 25 H 0.293 0.707 26 C -0.125 4.125 27 C -0.020 4.020 28 C -0.080 4.080 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.064 0.936 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 12.899 -12.799 4.145 18.638 hybrid contribution -0.573 2.384 -0.024 2.452 sum 12.326 -10.415 4.121 16.655 Atomic orbital electron populations 1.69942 1.06028 1.26915 1.49780 1.24958 0.94762 0.99222 0.94711 0.86598 0.80095 0.83890 0.77801 1.19865 1.20865 1.20831 1.21746 0.93267 0.92048 1.52198 0.92525 1.19772 0.90643 0.85277 0.98060 1.62498 1.16440 1.47156 1.00387 1.22226 0.96825 0.95060 0.93748 1.21901 0.91838 0.99170 0.87978 1.48243 1.06274 1.70063 1.08672 1.20338 0.82296 0.77380 0.90158 1.90727 1.72914 1.51575 1.26581 1.20035 0.92840 0.95618 0.97381 0.86861 1.21602 0.99005 0.93709 1.00246 1.21601 0.94806 1.01436 0.97620 1.19967 0.97858 0.92134 0.97451 1.21651 0.89923 0.98860 1.04710 1.74805 1.24920 1.03332 1.09550 1.78547 0.86858 1.21383 1.19872 1.44618 1.11144 1.16972 1.36173 0.70722 1.21204 0.98076 0.91495 1.01700 1.22241 0.96907 1.00265 0.82593 1.22319 0.94700 0.94587 0.96423 0.92724 0.94619 0.95156 0.93803 0.90247 0.89454 0.91107 0.90163 0.89397 0.89728 0.91018 0.89429 0.89757 0.90672 0.90056 0.93594 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.90 13.29 55.43 0.74 -24.16 16 2 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.55 -14.14 7.76 -34.44 -0.27 -14.41 16 8 H 0.06 1.45 5.88 -52.49 -0.31 1.14 16 9 C 0.19 4.41 5.11 -4.98 -0.03 4.38 16 10 N -0.54 -10.09 4.83 -235.47 -1.14 -11.23 16 11 C 0.05 0.89 5.25 -3.70 -0.02 0.87 16 12 C 0.11 1.62 6.61 -3.60 -0.02 1.60 16 13 N -0.60 -7.81 3.00 -172.18 -0.52 -8.33 16 14 C 0.51 6.70 6.66 -10.99 -0.07 6.63 16 15 O -0.54 -9.02 15.89 5.56 0.09 -8.93 16 16 C -0.04 -0.35 2.09 -92.78 -0.19 -0.54 16 17 H 0.11 0.85 6.23 -51.92 -0.32 0.53 16 18 C -0.11 -0.97 5.17 -26.45 -0.14 -1.10 16 19 C -0.12 -0.81 5.88 -26.57 -0.16 -0.96 16 20 C -0.04 -0.30 6.30 -27.83 -0.18 -0.48 16 21 C -0.01 -0.14 7.11 -83.13 -0.59 -0.73 16 22 N -0.26 -3.75 12.40 33.16 0.41 -3.34 16 23 N -0.09 -1.22 13.40 60.35 0.81 -0.41 16 24 N -0.37 -4.31 6.90 33.39 0.23 -4.08 16 25 H 0.45 4.08 8.96 -190.07 -1.70 2.37 16 26 C 0.01 0.14 5.97 -82.50 -0.49 -0.36 16 27 C 0.10 1.18 6.32 -3.36 -0.02 1.16 16 28 C 0.05 0.78 5.17 -3.46 -0.02 0.76 16 29 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.04 0.88 7.12 -51.93 -0.37 0.51 16 33 H 0.08 1.40 8.05 -51.93 -0.42 0.98 16 34 H 0.09 1.30 7.04 -51.93 -0.37 0.93 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 37 H 0.09 0.73 7.95 -51.92 -0.41 0.32 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.08 0.69 5.51 -51.93 -0.29 0.40 16 44 H 0.05 0.82 6.61 -51.93 -0.34 0.48 16 45 H 0.08 1.25 8.11 -51.93 -0.42 0.83 16 LS Contribution 354.32 15.07 5.34 5.34 Total: -1.00 -32.14 354.32 -9.24 -41.38 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -7.88 Total: -0.20 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -2.29 Total: -1.51 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: 0.53 Total: -51.55 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.09 Total: -8.93 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.14 -9.24 -41.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602202511.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.761 kcal (2) G-P(sol) polarization free energy of solvation -32.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds