Wall clock time and date at job start Fri Apr 10 2020 18:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99807 * 2 1 4 4 H 1.48501 * 109.47478 * 240.00182 * 3 2 1 5 5 H 1.48508 * 109.47397 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47209 * 119.99803 * 3 2 1 7 7 C 1.37868 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99895 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00329 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47568 * 180.02562 * 9 7 2 11 11 C 1.46897 * 111.00428 * 170.00002 * 10 9 7 12 12 C 1.53239 * 109.34352 * 187.25560 * 11 10 9 13 13 N 1.47082 * 108.51675 * 306.16881 * 12 11 10 14 14 C 1.34777 * 120.88001 * 231.18655 * 13 12 11 15 15 O 1.21283 * 119.99934 * 5.25194 * 14 13 12 16 16 C 1.50704 * 120.00099 * 185.24729 * 14 13 12 17 17 H 1.08993 * 109.68717 * 25.62458 * 16 14 13 18 18 C 1.53435 * 109.69321 * 146.21274 * 16 14 13 19 19 C 1.53102 * 109.55549 * 169.42773 * 18 16 14 20 20 C 1.53416 * 109.57911 * 289.93745 * 19 18 16 21 21 C 1.50604 * 108.33504 * 49.81686 * 20 19 18 22 22 N 1.32909 * 129.16354 * 163.47084 * 21 20 19 23 23 N 1.29021 * 108.63636 * 179.86066 * 22 21 20 24 24 N 1.29111 * 110.25502 * 0.41462 * 23 22 21 25 25 H 0.96996 * 126.00434 * 179.76895 * 24 23 22 26 26 C 1.34399 * 107.98763 * 359.51575 * 24 23 22 27 27 C 1.47077 * 118.23757 * 51.45631 * 13 12 11 28 28 C 1.46898 * 111.00038 * 294.30292 * 10 9 7 29 29 H 0.96999 * 120.00052 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47611 * 59.99923 * 9 7 2 31 31 H 1.09008 * 109.47089 * 300.00307 * 9 7 2 32 32 H 1.09005 * 109.49324 * 67.29022 * 11 10 9 33 33 H 1.09001 * 109.48980 * 307.21428 * 11 10 9 34 34 H 1.08999 * 109.63170 * 186.46235 * 12 11 10 35 35 H 1.08988 * 109.62909 * 65.87742 * 12 11 10 36 36 H 1.09003 * 109.45436 * 289.45595 * 18 16 14 37 37 H 1.09004 * 109.45941 * 49.39814 * 18 16 14 38 38 H 1.09004 * 109.45040 * 49.96602 * 19 18 16 39 39 H 1.08997 * 109.45796 * 169.90394 * 19 18 16 40 40 H 1.09002 * 109.69401 * 169.52477 * 20 19 18 41 41 H 1.09003 * 109.69255 * 290.06522 * 20 19 18 42 42 H 1.09003 * 109.62580 * 68.25596 * 27 13 12 43 43 H 1.08999 * 109.62525 * 188.82900 * 27 13 12 44 44 H 1.09003 * 109.48864 * 292.70433 * 28 10 9 45 45 H 1.08997 * 109.49256 * 52.78110 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 6 1.5214 -4.8934 0.2376 12 6 2.5640 -6.0031 0.4104 13 7 3.4617 -5.9861 -0.7545 14 6 3.7121 -7.1122 -1.4514 15 8 3.1222 -8.1367 -1.1805 16 6 4.7249 -7.0983 -2.5673 17 1 5.4517 -6.3049 -2.3936 18 6 5.4423 -8.4531 -2.6312 19 6 6.2730 -8.5330 -3.9148 20 6 5.3380 -8.6398 -5.1265 21 6 4.2983 -7.5555 -5.0196 22 7 3.4847 -7.0775 -5.9555 23 7 2.7512 -6.1542 -5.4320 24 7 3.0535 -5.9956 -4.1868 25 1 2.6459 -5.3603 -3.5775 26 6 4.0282 -6.8692 -3.8818 27 6 4.0838 -4.7088 -1.1350 28 6 2.9768 -3.6490 -1.2504 29 1 -0.4850 0.8400 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6247 -2.5570 0.8897 32 1 0.8797 -5.1263 -0.6122 33 1 0.9162 -4.8190 1.1411 34 1 2.0634 -6.9694 0.4728 35 1 3.1395 -5.8264 1.3189 36 1 6.0983 -8.5576 -1.7670 37 1 4.7044 -9.2554 -2.6257 38 1 6.8857 -7.6362 -4.0071 39 1 6.9182 -9.4106 -3.8758 40 1 5.9106 -8.5102 -6.0449 41 1 4.8526 -9.6157 -5.1310 42 1 4.8028 -4.4101 -0.3721 43 1 4.5886 -4.8190 -2.0947 44 1 2.3149 -3.8992 -2.0795 45 1 3.4272 -2.6721 -1.4261 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602202512.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:02 Heat of formation + Delta-G solvation = 62.871458 kcal Electronic energy + Delta-G solvation = -27868.958253 eV Core-core repulsion = 24116.205773 eV Total energy + Delta-G solvation = -3752.752480 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.69970 -40.41618 -38.06630 -36.86845 -34.72931 -34.04739 -32.57578 -31.36634 -30.53591 -30.37531 -28.41643 -25.96468 -24.78690 -23.60051 -23.37880 -22.93139 -22.09324 -20.83750 -19.86840 -19.32923 -18.00095 -17.59834 -16.53960 -16.38651 -15.86646 -15.68453 -15.04482 -14.83152 -14.64905 -14.50377 -14.20779 -14.05185 -13.86899 -13.78657 -13.70165 -12.96031 -12.70683 -12.31307 -12.05475 -11.82232 -11.65374 -11.58276 -11.51308 -11.36114 -11.26109 -11.14615 -10.98893 -10.88960 -10.72950 -10.69989 -10.55797 -10.04577 -9.96076 -9.43693 -9.07594 -8.76497 -8.57365 -7.55443 -6.16842 -4.20218 1.30559 2.24083 2.35503 2.50893 2.79015 3.23489 3.29248 3.30406 3.90416 4.15172 4.23053 4.27612 4.37021 4.48855 4.58914 4.77926 4.86321 4.98553 4.98760 5.10170 5.12324 5.19668 5.25854 5.29524 5.35973 5.51748 5.53417 5.57523 5.62709 5.68964 5.74165 5.78510 5.96116 6.00197 6.04880 6.13752 6.21303 6.39756 6.60342 7.03522 7.09897 7.21837 7.59066 7.83056 7.91193 7.95835 8.26494 8.30823 8.86152 9.45164 10.93762 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017784 B = 0.003443 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.103126 B = 8129.995328 C = 8793.117010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.532 5.532 11 C 0.039 3.961 12 C 0.117 3.883 13 N -0.608 5.608 14 C 0.512 3.488 15 O -0.531 6.531 16 C -0.034 4.034 17 H 0.114 0.886 18 C -0.102 4.102 19 C -0.118 4.118 20 C -0.035 4.035 21 C -0.006 4.006 22 N -0.259 5.259 23 N -0.078 5.078 24 N -0.376 5.376 25 H 0.448 0.552 26 C -0.006 4.006 27 C 0.098 3.902 28 C 0.050 3.950 29 H 0.264 0.736 30 H -0.008 1.008 31 H 0.034 0.966 32 H 0.026 0.974 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.016 0.984 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.067 -15.582 -4.671 20.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.554 4.554 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.257 5.257 11 C -0.090 4.090 12 C -0.005 4.005 13 N -0.342 5.342 14 C 0.298 3.702 15 O -0.408 6.408 16 C -0.057 4.057 17 H 0.132 0.868 18 C -0.140 4.140 19 C -0.156 4.156 20 C -0.074 4.074 21 C -0.146 4.146 22 N -0.125 5.125 23 N -0.057 5.057 24 N -0.096 5.096 25 H 0.295 0.705 26 C -0.142 4.142 27 C -0.024 4.024 28 C -0.079 4.079 29 H 0.073 0.927 30 H 0.010 0.990 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.034 0.966 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 12.015 -15.509 -5.417 20.353 hybrid contribution -0.030 1.281 0.690 1.455 sum 11.985 -14.228 -4.727 19.194 Atomic orbital electron populations 1.69937 1.06125 1.27173 1.50206 1.24989 0.94866 0.99414 0.95153 0.86548 0.79462 0.82657 0.78675 1.20225 1.21273 1.20081 1.21055 0.93379 0.89800 1.51126 0.91837 1.19748 0.89914 0.87019 0.96410 1.62088 1.28260 1.02837 1.32501 1.22439 0.94931 0.90416 1.01241 1.21834 0.91701 0.99734 0.87279 1.48362 1.46853 1.08363 1.30613 1.20374 0.83321 0.83483 0.82978 1.90698 1.50329 1.31679 1.68068 1.20045 0.95932 1.02365 0.87370 0.86830 1.21546 0.99322 0.94387 0.98775 1.21655 0.97549 1.03283 0.93113 1.20012 0.93057 0.94804 0.99488 1.21698 1.01814 1.01836 0.89278 1.74850 1.05219 1.06161 1.26256 1.78632 1.20317 1.15998 0.90757 1.44913 1.26161 1.27681 1.10880 0.70507 1.21316 0.97167 0.97314 0.98441 1.22285 0.96721 0.82724 1.00713 1.22453 0.94762 0.99289 0.91393 0.92663 0.99025 0.94839 0.95590 0.89658 0.89178 0.90420 0.90014 0.89486 0.91092 0.89905 0.89454 0.89595 0.89483 0.90646 0.96575 0.87856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.50 13.29 55.43 0.74 -24.77 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 7 C -0.52 -13.34 8.41 -34.45 -0.29 -13.63 16 8 H 0.06 1.59 7.13 -52.48 -0.37 1.22 16 9 C 0.19 4.63 4.72 -4.98 -0.02 4.60 16 10 N -0.53 -9.95 4.62 -235.47 -1.09 -11.04 16 11 C 0.04 0.63 5.62 -3.70 -0.02 0.61 16 12 C 0.12 1.59 6.61 -3.60 -0.02 1.56 16 13 N -0.61 -7.70 3.00 -172.19 -0.52 -8.22 16 14 C 0.51 6.55 6.67 -10.98 -0.07 6.48 16 15 O -0.53 -8.50 15.51 5.55 0.09 -8.41 16 16 C -0.03 -0.33 2.09 -92.78 -0.19 -0.53 16 17 H 0.11 0.88 6.27 -51.93 -0.33 0.55 16 18 C -0.10 -0.83 5.04 -26.45 -0.13 -0.96 16 19 C -0.12 -0.73 5.90 -26.46 -0.16 -0.89 16 20 C -0.03 -0.28 6.30 -27.71 -0.17 -0.46 16 21 C -0.01 -0.07 7.11 -83.12 -0.59 -0.66 16 22 N -0.26 -3.87 12.40 33.17 0.41 -3.46 16 23 N -0.08 -1.20 13.40 60.35 0.81 -0.39 16 24 N -0.38 -4.96 6.92 33.39 0.23 -4.73 16 25 H 0.45 5.55 7.90 -190.08 -1.50 4.05 16 26 C -0.01 -0.07 6.31 -82.50 -0.52 -0.59 16 27 C 0.10 1.16 6.32 -3.37 -0.02 1.14 16 28 C 0.05 0.80 5.47 -3.47 -0.02 0.78 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 30 H -0.01 -0.21 8.13 -51.93 -0.42 -0.63 16 31 H 0.03 0.87 7.97 -51.92 -0.41 0.45 16 32 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 1.35 7.99 -51.93 -0.41 0.94 16 34 H 0.09 1.24 7.04 -51.93 -0.37 0.87 16 35 H 0.08 1.00 8.14 -51.94 -0.42 0.58 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.86 7.47 -51.93 -0.39 0.47 16 38 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.08 0.70 5.65 -51.93 -0.29 0.41 16 44 H 0.02 0.26 7.08 -51.93 -0.37 -0.11 16 45 H 0.10 1.77 6.67 -51.93 -0.35 1.42 16 LS Contribution 354.74 15.07 5.35 5.35 Total: -1.00 -31.86 354.74 -9.07 -40.93 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -7.73 Total: 0.32 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -2.34 Total: -1.09 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: 0.58 Total: -52.60 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.09 Total: -8.41 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.86 -9.07 -40.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602202512.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.804 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds