Wall clock time and date at job start Fri Apr 10 2020 18:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 116.99961 * 2 1 4 4 O 1.20826 * 119.99788 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99840 * 179.97438 * 3 2 1 6 6 H 1.08992 * 109.47161 * 299.99543 * 5 3 2 7 7 N 1.46905 * 109.46636 * 180.02562 * 5 3 2 8 8 C 1.46891 * 111.00255 * 85.00313 * 7 5 3 9 9 C 1.53037 * 109.46037 * 275.02446 * 8 7 5 10 10 C 1.53197 * 109.31603 * 178.59891 * 9 8 7 11 11 N 1.46926 * 108.76185 * 54.65476 * 10 9 8 12 12 C 1.36938 * 120.63239 * 126.36217 * 11 10 9 13 13 H 1.08002 * 119.99707 * 331.86694 * 12 11 10 14 14 C 1.38807 * 120.00076 * 151.85786 * 12 11 10 15 15 N 1.31616 * 120.00376 * 343.07143 * 14 12 11 16 16 Si 1.86806 * 119.99871 * 163.06697 * 14 12 11 17 17 H 1.48504 * 109.46757 * 90.00379 * 16 14 12 18 18 H 1.48501 * 109.47279 * 209.99904 * 16 14 12 19 19 H 1.48492 * 109.47033 * 330.00395 * 16 14 12 20 20 C 1.46925 * 118.74085 * 306.38464 * 11 10 9 21 21 C 1.53039 * 109.46163 * 154.96910 * 8 7 5 22 22 C 1.50695 * 109.46797 * 60.00231 * 5 3 2 23 23 C 1.38678 * 120.41880 * 259.71478 * 22 5 3 24 24 C 1.38624 * 118.41993 * 179.78280 * 23 22 5 25 25 C 1.38222 * 119.16369 * 0.51789 * 24 23 22 26 26 N 1.31854 * 120.76531 * 359.72640 * 25 24 23 27 27 C 1.31888 * 121.72470 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.46867 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47359 * 299.99882 * 1 2 3 30 30 H 1.08995 * 109.47041 * 59.99938 * 1 2 3 31 31 H 1.00905 * 110.99754 * 321.04314 * 7 5 3 32 32 H 1.09003 * 109.45941 * 34.99275 * 8 7 5 33 33 H 1.09002 * 109.49808 * 298.56716 * 9 8 7 34 34 H 1.09005 * 109.49786 * 58.66445 * 9 8 7 35 35 H 1.08998 * 109.60012 * 294.87155 * 10 9 8 36 36 H 1.09001 * 109.70395 * 174.50169 * 10 9 8 37 37 H 0.97002 * 120.00332 * 179.97438 * 15 14 12 38 38 H 1.08995 * 109.59126 * 293.82318 * 20 11 10 39 39 H 1.08999 * 109.70966 * 173.46502 * 20 11 10 40 40 H 1.09002 * 109.49925 * 301.33696 * 21 8 7 41 41 H 1.09000 * 109.49812 * 61.43087 * 21 8 7 42 42 H 1.07998 * 120.78522 * 0.02869 * 23 22 5 43 43 H 1.08006 * 120.41865 * 180.21884 * 24 23 22 44 44 H 1.08000 * 119.62064 * 179.74103 * 25 24 23 45 45 H 1.07998 * 119.62100 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9557 0.7810 0.8908 7 7 3.9828 2.6836 0.0011 8 6 4.0170 3.2220 1.3673 9 6 2.6185 3.7028 1.7610 10 6 2.6503 4.2313 3.1986 11 7 3.6931 5.2613 3.3004 12 6 3.4000 6.5046 3.7939 13 1 2.4022 6.9050 3.6908 14 6 4.3851 7.2502 4.4266 15 7 5.4841 6.6633 4.8509 16 14 4.1511 9.0867 4.6759 17 1 3.4805 9.3278 5.9788 18 1 5.4748 9.7599 4.6685 19 1 3.3121 9.6321 3.5789 20 6 5.0563 4.9322 2.8622 21 6 4.9974 4.3955 1.4286 22 6 4.1056 0.5915 -1.2295 23 6 4.6090 -0.6984 -1.1525 24 6 5.0903 -1.2890 -2.3106 25 6 5.0627 -0.5739 -3.4931 26 7 4.5811 0.6531 -3.5281 27 6 4.1096 1.2442 -2.4475 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 3.3830 3.2382 -0.5913 32 1 4.3403 2.4423 2.0569 33 1 2.3046 4.4999 1.0870 34 1 1.9160 2.8719 1.6946 35 1 2.8758 3.4141 3.8837 36 1 1.6828 4.6646 3.4524 37 1 6.1727 7.1843 5.2928 38 1 5.4781 4.1722 3.5198 39 1 5.6781 5.8270 2.8921 40 1 5.9885 4.0578 1.1255 41 1 4.6610 5.1860 0.7577 42 1 4.6221 -1.2315 -0.2133 43 1 5.4864 -2.2936 -2.2882 44 1 5.4396 -1.0254 -4.3989 45 1 3.7228 2.2502 -2.5152 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610928266.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:53 Heat of formation + Delta-G solvation = -14.072183 kcal Electronic energy + Delta-G solvation = -27513.346146 eV Core-core repulsion = 23724.964388 eV Total energy + Delta-G solvation = -3788.381758 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.18290 -40.03379 -38.18636 -36.64113 -35.40942 -33.29949 -32.29342 -31.23537 -29.97601 -29.18741 -28.28672 -26.25759 -24.45316 -23.68475 -22.99741 -22.10850 -21.48988 -20.74703 -19.36433 -17.95811 -17.49505 -17.10378 -16.84275 -16.57368 -16.32761 -15.38630 -14.96365 -14.49517 -14.41307 -13.99804 -13.89882 -13.68274 -13.51244 -13.46725 -13.25581 -12.82682 -12.74617 -12.54667 -12.31651 -12.24623 -11.76518 -11.41297 -11.12557 -11.01027 -10.87516 -10.77834 -10.54952 -10.23872 -10.20076 -10.02887 -9.94635 -9.72373 -9.64046 -9.39431 -9.16162 -8.55962 -8.35933 -6.62786 -5.75685 -3.17539 0.85548 1.08686 1.98763 2.53453 3.39633 3.46667 3.49789 3.58889 4.04170 4.20731 4.49538 4.53171 4.58014 4.67554 4.77483 4.86422 4.90362 4.98971 5.05751 5.29232 5.31646 5.34936 5.44428 5.56111 5.57744 5.65662 5.87676 5.91468 6.00587 6.08145 6.18513 6.37122 6.41919 6.49962 6.58202 6.62643 6.77269 6.85472 6.99323 7.10402 7.27960 7.45784 7.55637 7.69987 7.79023 7.83135 8.49070 9.25294 9.88741 10.45630 11.32916 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.019330 B = 0.003237 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.191493 B = 8647.512434 C = 9496.432305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.430 3.570 4 O -0.485 6.485 5 C 0.144 3.856 6 H 0.125 0.875 7 N -0.653 5.653 8 C 0.091 3.909 9 C -0.160 4.160 10 C 0.148 3.852 11 N -0.592 5.592 12 C -0.251 4.251 13 H 0.064 0.936 14 C 0.002 3.998 15 N -0.903 5.903 16 Si 0.901 3.099 17 H -0.288 1.288 18 H -0.289 1.289 19 H -0.280 1.280 20 C 0.172 3.828 21 C -0.124 4.124 22 C -0.121 4.121 23 C -0.055 4.055 24 C -0.174 4.174 25 C 0.097 3.903 26 N -0.485 5.485 27 C 0.126 3.874 28 H 0.099 0.901 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.353 0.647 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.013 0.987 36 H 0.051 0.949 37 H 0.253 0.747 38 H 0.016 0.984 39 H 0.089 0.911 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.155 0.845 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.803 -18.851 -13.289 23.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.270 3.730 4 O -0.371 6.371 5 C 0.030 3.970 6 H 0.142 0.858 7 N -0.284 5.284 8 C -0.018 4.018 9 C -0.200 4.200 10 C 0.021 3.979 11 N -0.315 5.315 12 C -0.381 4.381 13 H 0.081 0.919 14 C -0.197 4.197 15 N -0.548 5.548 16 Si 0.731 3.269 17 H -0.215 1.215 18 H -0.215 1.215 19 H -0.205 1.205 20 C 0.046 3.954 21 C -0.164 4.164 22 C -0.123 4.123 23 C -0.082 4.082 24 C -0.194 4.194 25 C -0.060 4.060 26 N -0.193 5.193 27 C -0.031 4.031 28 H 0.117 0.883 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.174 0.826 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.030 0.970 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.035 0.965 39 H 0.107 0.893 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.172 0.828 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.235 -18.135 -14.012 23.145 hybrid contribution -1.253 0.599 1.257 1.873 sum -4.488 -17.537 -12.755 22.144 Atomic orbital electron populations 1.23269 0.76600 1.03535 1.02637 1.86534 1.23283 1.33588 1.83892 1.25085 0.93311 0.81745 0.72829 1.90713 1.66727 1.35957 1.43725 1.20291 0.84894 0.93565 0.98254 0.85768 1.61209 1.54380 0.99253 1.13544 1.21765 0.96400 0.97391 0.86221 1.22895 0.96053 1.00795 1.00263 1.20863 0.93173 0.91575 0.92271 1.44072 1.05058 1.09753 1.72613 1.19172 0.97128 0.91487 1.30266 0.91871 1.25028 0.98045 0.98738 0.97841 1.70025 1.09346 1.34235 1.41202 0.86319 0.76975 0.85640 0.77978 1.21472 1.21539 1.20508 1.20782 0.87111 0.99448 0.88088 1.22187 0.97068 0.95767 1.01372 1.20364 1.01628 0.95181 0.95164 1.21454 0.93983 0.93522 0.99206 1.22097 1.02005 1.01653 0.93641 1.22814 0.95027 0.90344 0.97780 1.67755 1.09785 1.10787 1.31017 1.22575 0.94096 0.99289 0.87165 0.88268 0.91731 0.92003 0.82586 0.91128 0.91946 0.92187 0.96955 0.93041 0.93678 0.96542 0.89277 0.92584 0.92585 0.84480 0.84615 0.82815 0.82859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.36 16 2 O -0.36 -4.01 10.48 -39.25 -0.41 -4.42 16 3 C 0.43 5.47 6.52 36.01 0.23 5.70 16 4 O -0.48 -7.31 12.14 -18.75 -0.23 -7.54 16 5 C 0.14 1.69 2.72 -70.01 -0.19 1.50 16 6 H 0.12 1.34 7.32 -51.93 -0.38 0.96 16 7 N -0.65 -9.03 5.49 -102.14 -0.56 -9.60 16 8 C 0.09 1.51 2.43 -67.68 -0.16 1.34 16 9 C -0.16 -2.91 4.23 -26.61 -0.11 -3.03 16 10 C 0.15 3.22 6.52 -3.71 -0.02 3.20 16 11 N -0.59 -15.07 2.99 -172.32 -0.52 -15.58 16 12 C -0.25 -7.02 9.58 -15.06 -0.14 -7.16 16 13 H 0.06 1.75 7.89 -52.49 -0.41 1.34 16 14 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 15 N -0.90 -26.40 11.19 55.49 0.62 -25.77 16 16 Si 0.90 21.97 29.59 -169.99 -5.03 16.94 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 20 C 0.17 4.11 5.30 -3.71 -0.02 4.09 16 21 C -0.12 -2.38 5.69 -26.61 -0.15 -2.54 16 22 C -0.12 -1.32 4.89 -104.48 -0.51 -1.83 16 23 C -0.06 -0.50 9.82 -39.28 -0.39 -0.88 16 24 C -0.17 -1.39 10.11 -39.45 -0.40 -1.79 16 25 C 0.10 0.90 11.18 -17.55 -0.20 0.71 16 26 N -0.49 -5.83 10.36 -13.25 -0.14 -5.96 16 27 C 0.13 1.50 10.49 -17.55 -0.18 1.32 16 28 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 30 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 31 H 0.35 5.03 6.90 -39.29 -0.27 4.76 16 32 H 0.07 1.17 7.43 -51.93 -0.39 0.78 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.04 4.96 -51.93 -0.26 0.78 16 35 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.05 1.12 7.93 -51.93 -0.41 0.71 16 37 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 2.39 6.06 -51.93 -0.31 2.08 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 43 H 0.14 0.69 8.06 -52.48 -0.42 0.26 16 44 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.15 1.79 7.27 -52.49 -0.38 1.41 16 LS Contribution 361.88 15.07 5.45 5.45 Total: -1.00 -32.11 361.88 -8.68 -40.78 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.60 Total: 3.74 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -1.27 Total: 1.96 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: -0.59 Total: -56.92 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -0.64 Total: -11.96 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.11 -8.68 -40.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610928266.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.709 kcal (2) G-P(sol) polarization free energy of solvation -32.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds