Wall clock time and date at job start Fri Apr 10 2020 18:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46493 * 109.47194 * 2 1 4 4 C 1.46505 * 120.00029 * 84.99985 * 3 2 1 5 5 C 1.50705 * 109.47123 * 85.00205 * 4 3 2 6 6 H 1.07998 * 119.99701 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00124 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00039 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 119.99717 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47205 * 90.00215 * 9 7 5 11 11 H 1.48496 * 109.47532 * 330.00476 * 9 7 5 12 12 H 1.48503 * 109.47527 * 210.00064 * 9 7 5 13 13 S 1.65600 * 120.00032 * 264.99953 * 3 2 1 14 14 O 1.42093 * 106.40154 * 23.53819 * 13 3 2 15 15 O 1.42107 * 106.40065 * 156.46266 * 13 3 2 16 16 N 1.65606 * 107.21825 * 269.99768 * 13 3 2 17 17 C 1.47076 * 120.88243 * 269.72386 * 16 13 3 18 18 C 1.52786 * 108.76388 * 231.11938 * 17 16 13 19 19 N 1.46901 * 109.42726 * 306.42782 * 18 17 16 20 20 C 1.46892 * 111.00089 * 187.11196 * 19 18 17 21 21 C 1.53006 * 109.46987 * 69.84964 * 20 19 18 22 22 C 1.46900 * 111.26632 * 62.96124 * 19 18 17 23 23 H 1.08994 * 109.49106 * 56.85918 * 22 19 18 24 24 C 1.53001 * 109.49026 * 176.94067 * 22 19 18 25 25 C 1.47082 * 120.87799 * 89.99855 * 16 13 3 26 26 H 1.08998 * 109.47325 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47320 * 300.00177 * 1 2 3 28 28 H 1.09000 * 109.47025 * 60.00042 * 1 2 3 29 29 H 1.09003 * 109.47320 * 239.99823 * 2 1 3 30 30 H 1.09000 * 109.47025 * 119.99958 * 2 1 3 31 31 H 1.08994 * 109.47139 * 324.99954 * 4 3 2 32 32 H 1.08998 * 109.47224 * 204.99499 * 4 3 2 33 33 H 0.96995 * 119.99673 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.62793 * 350.89108 * 17 16 13 35 35 H 1.09001 * 109.62964 * 111.47549 * 17 16 13 36 36 H 1.09005 * 109.56813 * 186.36727 * 18 17 16 37 37 H 1.09000 * 109.35651 * 66.35471 * 18 17 16 38 38 H 1.09000 * 109.47298 * 189.84671 * 20 19 18 39 39 H 1.08992 * 109.47373 * 309.85131 * 20 19 18 40 40 H 1.08999 * 109.47053 * 299.99455 * 21 20 19 41 41 H 1.09000 * 109.47240 * 60.00004 * 21 20 19 42 42 H 1.09007 * 109.46805 * 180.02562 * 21 20 19 43 43 H 1.08999 * 109.47479 * 172.60928 * 24 22 19 44 44 H 1.09006 * 109.46666 * 292.60499 * 24 22 19 45 45 H 1.08999 * 109.47294 * 52.60338 * 24 22 19 46 46 H 1.08996 * 109.62950 * 248.52879 * 25 16 13 47 47 H 1.09001 * 109.63000 * 8.91476 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1582 2.1086 1.2639 5 6 3.4948 1.7888 1.8824 6 1 4.1720 1.1110 1.3840 7 6 3.8525 2.3605 3.0849 8 7 5.0191 2.0818 3.6243 9 14 2.6808 3.5322 3.9472 10 1 1.7954 2.7646 4.8594 11 1 1.8553 4.2401 2.9360 12 1 3.4600 4.5233 4.7319 13 16 2.4121 2.1201 -1.4287 14 8 1.6869 1.4414 -2.4447 15 8 2.3057 3.5186 -1.1998 16 7 4.0144 1.8136 -1.7137 17 6 5.0570 2.7261 -1.2201 18 6 5.9855 3.0844 -2.3793 19 7 6.4832 1.8523 -3.0055 20 6 7.5085 2.1514 -4.0140 21 6 8.7785 2.6463 -3.3189 22 6 5.3850 1.0691 -3.5873 23 1 4.8424 1.6824 -4.3066 24 6 5.9548 -0.1631 -4.2930 25 6 4.4323 0.6249 -2.4723 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 1.3617 1.8097 1.9453 32 1 2.0922 3.1802 1.0756 33 1 5.2706 2.4838 4.4705 34 1 4.5950 3.6326 -0.8289 35 1 5.6307 2.2354 -0.4337 36 1 6.8270 3.6683 -2.0060 37 1 5.4348 3.6698 -3.1156 38 1 7.7335 1.2488 -4.5821 39 1 7.1396 2.9232 -4.6893 40 1 8.5535 3.5490 -2.7509 41 1 9.1475 1.8744 -2.6436 42 1 9.5392 2.8687 -4.0674 43 1 5.1373 -0.8106 -4.6102 44 1 6.5289 0.1507 -5.1649 45 1 6.6040 -0.7070 -3.6070 46 1 4.9446 -0.0716 -1.8087 47 1 3.5571 0.1409 -2.9059 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619712635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:20 Heat of formation + Delta-G solvation = -64.143696 kcal Electronic energy + Delta-G solvation = -27583.642210 eV Core-core repulsion = 23928.533140 eV Total energy + Delta-G solvation = -3655.109070 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.21340 -36.81177 -36.14535 -35.30486 -34.94330 -32.73845 -32.61736 -30.37709 -30.21954 -27.34044 -27.10044 -25.72024 -22.91653 -22.36294 -21.90689 -21.47304 -19.92125 -18.30108 -17.36358 -16.92091 -16.73813 -16.02772 -15.68129 -15.08010 -14.88636 -14.41789 -14.32906 -14.21199 -13.92650 -13.56792 -13.31691 -12.80319 -12.50035 -12.43756 -12.41604 -12.11664 -12.10043 -12.02286 -11.87589 -11.85232 -11.61952 -11.51059 -11.46294 -11.14576 -11.10073 -10.97581 -10.89131 -10.60556 -10.52872 -10.43633 -10.24436 -10.12668 -9.57366 -8.76646 -8.63580 -8.17485 -8.07211 -6.14143 -4.14276 1.18959 3.25184 3.32646 3.38952 3.40181 3.88454 4.02813 4.36423 4.76421 4.81218 4.93966 5.06443 5.18523 5.20292 5.26445 5.34730 5.40521 5.46361 5.52597 5.54517 5.68120 5.68873 5.71081 5.74238 5.75467 5.83770 5.93644 5.99972 6.01689 6.06186 6.19803 6.23700 6.26678 6.43816 6.51816 6.58189 6.60370 6.83820 6.92358 7.14782 7.17360 7.18554 7.44153 7.56486 8.43232 8.90677 9.46773 10.98028 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.012865 B = 0.005650 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.970262 B = 4954.935023 C = 6245.737832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.129 3.871 3 N -0.987 5.987 4 C 0.214 3.786 5 C -0.538 4.538 6 H 0.082 0.918 7 C 0.077 3.923 8 N -0.892 5.892 9 Si 0.865 3.135 10 H -0.275 1.275 11 H -0.261 1.261 12 H -0.284 1.284 13 S 2.786 3.214 14 O -0.996 6.996 15 O -0.981 6.981 16 N -1.003 6.003 17 C 0.131 3.869 18 C 0.044 3.956 19 N -0.529 5.529 20 C 0.045 3.955 21 C -0.148 4.148 22 C 0.072 3.928 23 H 0.042 0.958 24 C -0.147 4.147 25 C 0.131 3.869 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.031 0.969 32 H 0.045 0.955 33 H 0.264 0.736 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.032 0.968 38 H 0.079 0.921 39 H 0.028 0.972 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.933 -3.089 -13.525 14.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.003 3.997 3 N -0.827 5.827 4 C 0.091 3.909 5 C -0.577 4.577 6 H 0.100 0.900 7 C -0.126 4.126 8 N -0.530 5.530 9 Si 0.692 3.308 10 H -0.201 1.201 11 H -0.186 1.186 12 H -0.210 1.210 13 S 2.796 3.204 14 O -0.980 6.980 15 O -0.965 6.965 16 N -0.842 5.842 17 C 0.006 3.994 18 C -0.085 4.085 19 N -0.255 5.255 20 C -0.083 4.083 21 C -0.205 4.205 22 C -0.039 4.039 23 H 0.060 0.940 24 C -0.205 4.205 25 C 0.005 3.995 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.050 0.950 38 H 0.097 0.903 39 H 0.046 0.954 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.088 0.912 46 H 0.093 0.907 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.654 -2.809 -13.521 13.908 hybrid contribution -0.555 0.891 0.349 1.106 sum 1.099 -1.918 -13.172 13.356 Atomic orbital electron populations 1.22219 0.96955 1.01567 1.02228 1.21002 0.93487 0.82687 1.02527 1.57575 1.78683 1.22973 1.23433 1.19583 0.98012 0.92282 0.81062 1.21446 1.00935 1.29033 1.06300 0.89967 1.24833 0.94949 0.95969 0.96865 1.69890 1.20523 1.43832 1.18780 0.87010 0.81678 0.81714 0.80432 1.20084 1.18556 1.20954 1.01688 0.72599 0.73293 0.72801 1.93523 1.70622 1.76454 1.57428 1.93547 1.85912 1.31004 1.86075 1.58109 1.24664 1.33691 1.67686 1.21378 0.88898 0.93699 0.95470 1.22449 0.98410 0.90822 0.96839 1.61944 1.12129 1.20159 1.31278 1.22175 0.92626 1.00042 0.93452 1.21786 0.96368 1.01723 1.00656 1.21915 0.91760 0.95116 0.95064 0.94004 1.21898 1.01408 0.97090 1.00104 1.21471 0.98058 0.87331 0.92662 0.92116 0.92296 0.92628 0.91735 0.89907 0.95123 0.93678 0.92560 0.88613 0.89523 0.89428 0.94972 0.90303 0.95354 0.92601 0.91702 0.92726 0.91800 0.92431 0.91211 0.90663 0.89325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 10.24 37.15 0.38 -2.20 16 2 C 0.13 2.20 6.06 -4.05 -0.02 2.18 16 3 N -0.99 -19.89 2.82 -115.67 -0.33 -20.21 16 4 C 0.21 4.96 4.50 -5.19 -0.02 4.93 16 5 C -0.54 -14.02 9.94 -34.44 -0.34 -14.36 16 6 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 7 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.89 -25.73 13.96 55.43 0.77 -24.96 16 9 Si 0.86 20.60 27.47 -169.99 -4.67 15.93 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 13 S 2.79 55.41 6.12 -107.50 -0.66 54.75 16 14 O -1.00 -19.92 15.72 -57.17 -0.90 -20.81 16 15 O -0.98 -22.24 15.29 -57.17 -0.87 -23.12 16 16 N -1.00 -17.62 3.39 -113.49 -0.39 -18.00 16 17 C 0.13 2.30 6.64 -3.84 -0.03 2.28 16 18 C 0.04 0.64 5.45 -3.93 -0.02 0.62 16 19 N -0.53 -7.06 4.45 -226.64 -1.01 -8.07 16 20 C 0.04 0.49 5.45 -3.83 -0.02 0.46 16 21 C -0.15 -1.48 9.93 37.16 0.37 -1.11 16 22 C 0.07 0.93 2.60 -67.59 -0.18 0.75 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 24 C -0.15 -1.47 8.50 37.16 0.32 -1.16 16 25 C 0.13 1.94 5.95 -3.60 -0.02 1.92 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.98 7.61 -51.93 -0.40 0.59 16 30 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 31 H 0.03 0.69 7.54 -51.93 -0.39 0.30 16 32 H 0.05 1.11 5.97 -51.93 -0.31 0.80 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.10 1.80 6.93 -51.93 -0.36 1.44 16 35 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 36 H 0.09 1.15 6.36 -51.93 -0.33 0.82 16 37 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.76 5.60 -51.93 -0.29 0.47 16 39 H 0.03 0.31 8.08 -51.93 -0.42 -0.11 16 40 H 0.05 0.58 6.55 -51.93 -0.34 0.24 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.51 6.48 -51.93 -0.34 0.17 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.09 1.24 6.93 -51.93 -0.36 0.88 16 LS Contribution 372.77 15.07 5.62 5.62 Total: -1.00 -30.88 372.77 -10.31 -41.19 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -8.19 Total: 1.37 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 0.31 Total: -3.69 kcal Atomic # 7 Polarization: -70.30 SS G_CDS: -0.95 Total: -71.24 kcal Atomic # 8 Polarization: -42.16 SS G_CDS: -1.77 Total: -43.93 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.67 Total: 15.93 kcal Atomic # 16 Polarization: 55.41 SS G_CDS: -0.66 Total: 54.75 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.88 -10.31 -41.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619712635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.954 kcal (2) G-P(sol) polarization free energy of solvation -30.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds