Wall clock time and date at job start Fri Apr 10 2020 18:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46493 * 109.47194 * 2 1 4 4 C 1.46505 * 120.00029 * 84.99985 * 3 2 1 5 5 C 1.50705 * 109.47123 * 85.00205 * 4 3 2 6 6 H 1.07998 * 119.99701 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00124 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00039 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 119.99717 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47205 * 90.00215 * 9 7 5 11 11 H 1.48496 * 109.47532 * 330.00476 * 9 7 5 12 12 H 1.48503 * 109.47527 * 210.00064 * 9 7 5 13 13 S 1.65600 * 120.00032 * 264.99953 * 3 2 1 14 14 O 1.42093 * 106.40154 * 23.53819 * 13 3 2 15 15 O 1.42107 * 106.40065 * 156.46266 * 13 3 2 16 16 N 1.65606 * 107.21825 * 269.99768 * 13 3 2 17 17 C 1.47076 * 120.88243 * 269.72386 * 16 13 3 18 18 C 1.52786 * 108.76388 * 231.11938 * 17 16 13 19 19 N 1.46901 * 109.42726 * 306.42782 * 18 17 16 20 20 C 1.46892 * 111.00089 * 187.11196 * 19 18 17 21 21 C 1.53006 * 109.46987 * 69.84964 * 20 19 18 22 22 C 1.46900 * 111.26632 * 62.96124 * 19 18 17 23 23 H 1.08994 * 109.49106 * 56.85918 * 22 19 18 24 24 C 1.53001 * 109.49026 * 176.94067 * 22 19 18 25 25 C 1.47082 * 120.87799 * 89.99855 * 16 13 3 26 26 H 1.08998 * 109.47325 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47320 * 300.00177 * 1 2 3 28 28 H 1.09000 * 109.47025 * 60.00042 * 1 2 3 29 29 H 1.09003 * 109.47320 * 239.99823 * 2 1 3 30 30 H 1.09000 * 109.47025 * 119.99958 * 2 1 3 31 31 H 1.08994 * 109.47139 * 324.99954 * 4 3 2 32 32 H 1.08998 * 109.47224 * 204.99499 * 4 3 2 33 33 H 0.96995 * 119.99673 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.62793 * 350.89108 * 17 16 13 35 35 H 1.09001 * 109.62964 * 111.47549 * 17 16 13 36 36 H 1.09005 * 109.56813 * 186.36727 * 18 17 16 37 37 H 1.09000 * 109.35651 * 66.35471 * 18 17 16 38 38 H 1.09000 * 109.47298 * 189.84671 * 20 19 18 39 39 H 1.08992 * 109.47373 * 309.85131 * 20 19 18 40 40 H 1.08999 * 109.47053 * 299.99455 * 21 20 19 41 41 H 1.09000 * 109.47240 * 60.00004 * 21 20 19 42 42 H 1.09007 * 109.46805 * 180.02562 * 21 20 19 43 43 H 1.08999 * 109.47479 * 172.60928 * 24 22 19 44 44 H 1.09006 * 109.46666 * 292.60499 * 24 22 19 45 45 H 1.08999 * 109.47294 * 52.60338 * 24 22 19 46 46 H 1.08996 * 109.62950 * 248.52879 * 25 16 13 47 47 H 1.09001 * 109.63000 * 8.91476 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1582 2.1086 1.2639 5 6 3.4948 1.7888 1.8824 6 1 4.1720 1.1110 1.3840 7 6 3.8525 2.3605 3.0849 8 7 5.0191 2.0818 3.6243 9 14 2.6808 3.5322 3.9472 10 1 1.7954 2.7646 4.8594 11 1 1.8553 4.2401 2.9360 12 1 3.4600 4.5233 4.7319 13 16 2.4121 2.1201 -1.4287 14 8 1.6869 1.4414 -2.4447 15 8 2.3057 3.5186 -1.1998 16 7 4.0144 1.8136 -1.7137 17 6 5.0570 2.7261 -1.2201 18 6 5.9855 3.0844 -2.3793 19 7 6.4832 1.8523 -3.0055 20 6 7.5085 2.1514 -4.0140 21 6 8.7785 2.6463 -3.3189 22 6 5.3850 1.0691 -3.5873 23 1 4.8424 1.6824 -4.3066 24 6 5.9548 -0.1631 -4.2930 25 6 4.4323 0.6249 -2.4723 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 1.3617 1.8097 1.9453 32 1 2.0922 3.1802 1.0756 33 1 5.2706 2.4838 4.4705 34 1 4.5950 3.6326 -0.8289 35 1 5.6307 2.2354 -0.4337 36 1 6.8270 3.6683 -2.0060 37 1 5.4348 3.6698 -3.1156 38 1 7.7335 1.2488 -4.5821 39 1 7.1396 2.9232 -4.6893 40 1 8.5535 3.5490 -2.7509 41 1 9.1475 1.8744 -2.6436 42 1 9.5392 2.8687 -4.0674 43 1 5.1373 -0.8106 -4.6102 44 1 6.5289 0.1507 -5.1649 45 1 6.6040 -0.7070 -3.6070 46 1 4.9446 -0.0716 -1.8087 47 1 3.5571 0.1409 -2.9059 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619712635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:19 Heat of formation + Delta-G solvation = -86.240419 kcal Electronic energy + Delta-G solvation = -27584.600396 eV Core-core repulsion = 23928.533140 eV Total energy + Delta-G solvation = -3656.067256 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.33449 -38.45825 -37.76268 -36.96581 -36.15859 -34.64052 -33.78718 -31.81643 -31.40604 -28.93099 -28.36133 -26.86403 -24.59534 -23.57659 -23.16699 -22.82976 -21.04676 -19.81072 -19.08909 -18.64956 -18.44127 -17.48313 -16.82981 -16.50036 -16.09714 -16.03526 -15.51176 -15.44989 -15.42792 -14.81120 -14.59645 -14.55907 -14.13806 -13.85914 -13.64212 -13.60492 -13.44431 -13.35279 -13.14733 -13.11438 -12.83595 -12.74163 -12.70242 -12.66808 -12.63917 -12.31283 -12.22004 -12.04024 -11.99477 -11.76624 -11.61999 -11.57033 -11.43244 -10.73938 -10.11982 -9.76486 -9.23473 -8.25268 -6.28717 -0.38651 1.35926 1.40582 1.49704 1.86718 2.36447 2.46374 2.85964 3.08848 3.27276 3.64489 3.90027 3.93547 4.00677 4.11631 4.26837 4.29147 4.39092 4.41305 4.44365 4.51044 4.52629 4.62980 4.67747 4.69566 4.79685 4.89264 4.89588 4.96434 4.97387 5.00940 5.01540 5.09245 5.15696 5.20534 5.35147 5.36955 5.42325 5.42889 5.49819 5.54989 5.86768 6.09926 6.20333 6.34794 6.76431 7.35102 8.89614 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.012865 B = 0.005650 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.970262 B = 4954.935023 C = 6245.737832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.119 3.881 3 N -0.992 5.992 4 C 0.222 3.778 5 C -0.529 4.529 6 H 0.054 0.946 7 C 0.026 3.974 8 N -0.934 5.934 9 Si 0.920 3.080 10 H -0.261 1.261 11 H -0.255 1.255 12 H -0.283 1.283 13 S 2.793 3.207 14 O -0.996 6.996 15 O -1.012 7.012 16 N -1.002 6.002 17 C 0.134 3.866 18 C 0.052 3.948 19 N -0.540 5.540 20 C 0.045 3.955 21 C -0.145 4.145 22 C 0.071 3.929 23 H 0.038 0.962 24 C -0.140 4.140 25 C 0.124 3.876 26 H 0.092 0.908 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.043 0.957 32 H 0.033 0.967 33 H 0.266 0.734 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.099 0.901 37 H 0.033 0.967 38 H 0.096 0.904 39 H 0.033 0.967 40 H 0.047 0.953 41 H 0.054 0.946 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.073 0.927 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.495 -3.739 -14.901 15.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.006 4.006 3 N -0.832 5.832 4 C 0.097 3.903 5 C -0.568 4.568 6 H 0.072 0.928 7 C -0.174 4.174 8 N -0.574 5.574 9 Si 0.744 3.256 10 H -0.186 1.186 11 H -0.179 1.179 12 H -0.209 1.209 13 S 2.803 3.197 14 O -0.980 6.980 15 O -0.996 6.996 16 N -0.842 5.842 17 C 0.008 3.992 18 C -0.078 4.078 19 N -0.266 5.266 20 C -0.082 4.082 21 C -0.203 4.203 22 C -0.039 4.039 23 H 0.056 0.944 24 C -0.198 4.198 25 C -0.001 4.001 26 H 0.110 0.890 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.117 0.883 37 H 0.051 0.949 38 H 0.114 0.886 39 H 0.051 0.949 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.092 0.908 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.196 -3.485 -14.920 15.368 hybrid contribution -0.361 1.008 0.711 1.286 sum 0.835 -2.477 -14.208 14.447 Atomic orbital electron populations 1.22199 0.95188 1.03513 1.01702 1.21281 0.95019 0.81047 1.03237 1.57573 1.79214 1.24173 1.22242 1.19317 0.96612 0.91968 0.82362 1.21565 1.01646 1.27700 1.05892 0.92789 1.25562 0.96350 0.97650 0.97807 1.70013 1.22411 1.45516 1.19478 0.86120 0.79955 0.79898 0.79604 1.18613 1.17906 1.20850 1.01363 0.73030 0.72588 0.72690 1.93512 1.71045 1.76223 1.57218 1.93501 1.86605 1.33062 1.86464 1.57988 1.23758 1.34680 1.67817 1.21257 0.88994 0.92578 0.96338 1.22323 0.98074 0.91670 0.95742 1.61954 1.12649 1.19466 1.32550 1.22275 0.91908 1.01065 0.92985 1.21771 0.96582 1.00952 1.00948 1.21970 0.91466 0.96329 0.94175 0.94421 1.21867 1.01931 0.95704 1.00270 1.21736 0.99007 0.86307 0.93071 0.88975 0.92661 0.93271 0.89976 0.90296 0.93870 0.94924 0.92506 0.90574 0.91982 0.88297 0.94868 0.88586 0.94902 0.93408 0.92640 0.90620 0.90504 0.90676 0.91377 0.90823 0.88412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.72 10.24 71.98 0.74 -3.99 16 2 C 0.12 3.93 6.06 86.38 0.52 4.45 16 3 N -0.99 -39.85 2.82 -519.86 -1.47 -41.32 16 4 C 0.22 10.29 4.50 85.63 0.39 10.68 16 5 C -0.53 -28.09 9.94 25.60 0.25 -27.83 16 6 H 0.05 3.12 8.06 -2.91 -0.02 3.09 16 7 C 0.03 1.41 5.47 84.66 0.46 1.87 16 8 N -0.93 -55.07 13.96 21.45 0.30 -54.77 16 9 Si 0.92 42.36 27.47 68.60 1.88 44.25 16 10 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 11 H -0.26 -11.41 6.54 99.48 0.65 -10.76 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 13 S 2.79 111.29 6.12 -56.49 -0.35 110.94 16 14 O -1.00 -38.87 15.72 -128.00 -2.01 -40.89 16 15 O -1.01 -46.61 15.29 -128.00 -1.96 -48.56 16 16 N -1.00 -35.60 3.39 -512.98 -1.74 -37.34 16 17 C 0.13 4.89 6.64 86.20 0.57 5.47 16 18 C 0.05 1.49 5.45 86.23 0.47 1.96 16 19 N -0.54 -13.84 4.45 -870.96 -3.87 -17.71 16 20 C 0.04 0.87 5.45 86.31 0.47 1.34 16 21 C -0.14 -2.67 9.93 71.98 0.71 -1.95 16 22 C 0.07 1.73 2.60 45.00 0.12 1.85 16 23 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 24 C -0.14 -2.44 8.50 71.98 0.61 -1.82 16 25 C 0.12 3.58 5.95 86.35 0.51 4.10 16 26 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.08 2.38 7.61 -2.39 -0.02 2.37 16 30 H 0.08 2.65 8.11 -2.39 -0.02 2.63 16 31 H 0.04 1.90 7.54 -2.39 -0.02 1.88 16 32 H 0.03 1.61 5.97 -2.39 -0.01 1.60 16 33 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 34 H 0.08 3.03 6.93 -2.39 -0.02 3.02 16 35 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.10 2.60 6.36 -2.38 -0.02 2.59 16 37 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.10 1.56 5.60 -2.39 -0.01 1.55 16 39 H 0.03 0.63 8.08 -2.39 -0.02 0.61 16 40 H 0.05 0.95 6.55 -2.39 -0.02 0.93 16 41 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 43 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.07 1.06 6.48 -2.38 -0.02 1.05 16 45 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.10 2.61 6.93 -2.39 -0.02 2.60 16 Total: -1.00 -66.52 372.77 -2.50 -69.03 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.88 Total: 20.25 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 5.83 Total: -3.87 kcal Atomic # 7 Polarization: -144.36 SS G_CDS: -6.78 Total: -151.15 kcal Atomic # 8 Polarization: -85.48 SS G_CDS: -3.97 Total: -89.45 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 1.88 Total: 44.25 kcal Atomic # 16 Polarization: 111.29 SS G_CDS: -0.35 Total: 110.94 kcal Total: -66.52 -2.50 -69.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619712635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.215 kcal (2) G-P(sol) polarization free energy of solvation -66.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds