Wall clock time and date at job start Fri Apr 10 2020 18:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36004 * 117.00354 * 2 1 4 4 C 1.38706 * 119.97907 * 179.97438 * 3 2 1 5 5 C 1.38110 * 120.01536 * 180.02562 * 4 3 2 6 6 C 1.38862 * 119.98046 * 359.97438 * 5 4 3 7 7 N 1.39945 * 120.01610 * 180.02562 * 6 5 4 8 8 C 1.46954 * 111.00063 * 56.19754 * 7 6 5 9 9 C 1.53057 * 109.36263 * 183.18830 * 8 7 6 10 10 N 1.46956 * 109.36162 * 301.59585 * 9 8 7 11 11 C 1.46899 * 110.99677 * 183.18894 * 10 9 8 12 12 C 1.50698 * 109.47292 * 170.00200 * 11 10 9 13 13 O 1.21291 * 119.99881 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00178 * 180.02562 * 12 11 10 15 15 C 1.37103 * 119.99905 * 179.97438 * 14 12 11 16 16 H 1.07997 * 119.99941 * 0.02562 * 15 14 12 17 17 C 1.38952 * 119.99745 * 179.97438 * 15 14 12 18 18 N 1.31407 * 119.99668 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 120.00293 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47316 * 89.99640 * 19 17 15 21 21 H 1.48503 * 109.47313 * 210.00034 * 19 17 15 22 22 H 1.48503 * 109.46927 * 329.99497 * 19 17 15 23 23 C 1.46954 * 110.88042 * 59.32472 * 10 9 8 24 24 C 1.46956 * 110.99589 * 179.97438 * 7 6 5 25 25 C 1.38863 * 119.96228 * 0.26874 * 6 5 4 26 26 C 1.38104 * 119.97974 * 359.47850 * 25 6 5 27 27 H 1.08999 * 109.47222 * 300.00891 * 1 2 3 28 28 H 1.09005 * 109.46716 * 60.00547 * 1 2 3 29 29 H 1.08993 * 109.47513 * 179.97438 * 1 2 3 30 30 H 1.07995 * 119.98846 * 0.02562 * 4 3 2 31 31 H 1.08001 * 120.00622 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.49355 * 63.21956 * 8 7 6 33 33 H 1.09004 * 109.48943 * 303.15407 * 8 7 6 34 34 H 1.09002 * 109.48707 * 181.63135 * 9 8 7 35 35 H 1.09002 * 109.48655 * 61.56567 * 9 8 7 36 36 H 1.09003 * 109.47063 * 289.99903 * 11 10 9 37 37 H 1.09002 * 109.47208 * 50.00081 * 11 10 9 38 38 H 0.96996 * 120.00222 * 359.97438 * 14 12 11 39 39 H 0.97005 * 119.99849 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.49355 * 60.64341 * 23 10 9 41 41 H 1.09003 * 109.49032 * 180.68883 * 23 10 9 42 42 H 1.09002 * 109.48908 * 56.84632 * 24 7 6 43 43 H 1.09002 * 109.49369 * 296.77504 * 24 7 6 44 44 H 1.07997 * 120.00779 * 179.70754 * 25 6 5 45 45 H 1.08000 * 119.99066 * 180.25367 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 3.4317 1.2838 0.0005 5 6 4.0595 2.5139 0.0011 6 6 3.3037 3.6788 0.0005 7 7 3.9391 4.9256 0.0005 8 6 4.8587 5.0481 -1.1391 9 6 5.5906 6.3899 -1.0588 10 7 4.6073 7.4820 -1.0595 11 6 5.2742 8.7909 -1.0595 12 6 4.2558 9.8737 -1.3069 13 8 3.0891 9.5836 -1.4679 14 7 4.6414 11.1643 -1.3503 15 6 3.7149 12.1494 -1.5759 16 1 2.6760 11.8911 -1.7184 17 6 4.1124 13.4801 -1.6201 18 7 3.2243 14.4243 -1.8358 19 14 5.9092 13.9269 -1.3728 20 1 6.6027 13.9345 -2.6859 21 1 6.0039 15.2740 -0.7551 22 1 6.5496 12.9272 -0.4806 23 6 3.6876 7.3596 0.0802 24 6 2.9558 6.0177 -0.0007 25 6 1.9170 3.6057 0.0051 26 6 1.2908 2.3748 -0.0007 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 4.0193 0.3777 0.0005 31 1 5.1381 2.5698 0.0019 32 1 4.2934 4.9973 -2.0697 33 1 5.5847 4.2355 -1.1096 34 1 6.2519 6.4955 -1.9187 35 1 6.1775 6.4296 -0.1411 36 1 5.7519 8.9552 -0.0935 37 1 6.0282 8.8145 -1.8463 38 1 5.5744 11.3963 -1.2218 39 1 3.5019 15.3532 -1.8670 40 1 4.2529 7.4103 1.0107 41 1 2.9619 8.1723 0.0508 42 1 2.2941 5.9123 0.8591 43 1 2.3691 5.9779 -0.9185 44 1 1.3284 4.5112 0.0095 45 1 0.2123 2.3177 -0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728153292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:33 Heat of formation + Delta-G solvation = -11.361205 kcal Electronic energy + Delta-G solvation = -26274.866393 eV Core-core repulsion = 22486.602192 eV Total energy + Delta-G solvation = -3788.264201 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.68974 -39.53943 -38.46564 -37.08846 -34.82238 -33.86319 -31.78141 -31.68504 -30.57548 -30.05627 -28.21298 -27.00669 -25.23025 -24.26978 -23.48875 -22.05135 -21.51213 -19.79815 -19.37842 -18.49066 -18.27495 -17.10875 -16.41550 -16.00766 -15.94450 -15.41700 -15.10545 -14.93267 -14.85128 -14.45262 -14.37322 -14.03801 -13.85256 -13.65131 -13.35449 -13.16771 -12.76307 -12.73269 -12.48318 -12.24954 -12.16240 -11.84983 -11.59536 -11.36059 -11.28424 -11.19793 -11.06955 -10.83823 -10.66295 -10.59622 -9.98604 -9.55136 -9.44987 -9.17532 -8.58867 -8.19271 -7.97752 -7.63749 -6.32047 -3.83389 1.14630 1.26248 3.01817 3.06225 3.06530 3.14470 3.44918 3.72024 3.80738 3.89794 4.09518 4.55613 4.65741 4.70760 4.80290 4.84947 4.85805 5.05611 5.08976 5.13452 5.16928 5.20776 5.29493 5.32316 5.38973 5.44504 5.50773 5.63508 5.70583 5.74626 5.78258 5.83462 5.89563 5.93247 6.07146 6.15146 6.18156 6.31259 6.42043 6.90253 7.00907 7.14656 7.27945 7.29464 7.57699 8.13585 8.59262 8.94284 9.41591 9.82333 10.81018 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.034505 B = 0.002236 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.286365 B =12518.655432 C =13160.834975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.322 6.322 3 C 0.094 3.906 4 C -0.127 4.127 5 C -0.103 4.103 6 C 0.083 3.917 7 N -0.490 5.490 8 C 0.063 3.937 9 C 0.054 3.946 10 N -0.517 5.517 11 C 0.044 3.956 12 C 0.453 3.547 13 O -0.560 6.560 14 N -0.591 5.591 15 C -0.304 4.304 16 H 0.120 0.880 17 C 0.041 3.959 18 N -0.881 5.881 19 Si 0.880 3.120 20 H -0.271 1.271 21 H -0.277 1.277 22 H -0.270 1.270 23 C 0.053 3.947 24 C 0.057 3.943 25 C -0.130 4.130 26 C -0.179 4.179 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.097 0.903 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.041 0.959 36 H 0.050 0.950 37 H 0.090 0.910 38 H 0.370 0.630 39 H 0.273 0.727 40 H 0.033 0.967 41 H 0.111 0.889 42 H 0.083 0.917 43 H 0.057 0.943 44 H 0.133 0.867 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.794 -25.230 4.475 25.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.236 6.236 3 C 0.049 3.951 4 C -0.146 4.146 5 C -0.123 4.123 6 C -0.014 4.014 7 N -0.206 5.206 8 C -0.063 4.063 9 C -0.074 4.074 10 N -0.242 5.242 11 C -0.087 4.087 12 C 0.238 3.762 13 O -0.442 6.442 14 N -0.230 5.230 15 C -0.433 4.433 16 H 0.137 0.863 17 C -0.162 4.162 18 N -0.521 5.521 19 Si 0.706 3.294 20 H -0.196 1.196 21 H -0.202 1.202 22 H -0.195 1.195 23 C -0.075 4.075 24 C -0.070 4.070 25 C -0.151 4.151 26 C -0.199 4.199 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.116 0.884 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.109 0.891 38 H 0.203 0.797 39 H 0.084 0.916 40 H 0.052 0.948 41 H 0.129 0.871 42 H 0.101 0.899 43 H 0.076 0.924 44 H 0.150 0.850 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.069 -25.294 4.322 25.743 hybrid contribution 1.209 0.793 0.338 1.485 sum 3.278 -24.501 4.660 25.155 Atomic orbital electron populations 1.23014 0.78648 1.03705 1.01326 1.86059 1.21150 1.27034 1.89339 1.18931 0.92322 0.84052 0.99793 1.20255 0.91288 0.98153 1.04902 1.20591 0.99724 0.90120 1.01910 1.18946 0.91811 0.90187 1.00477 1.59441 1.19222 1.00755 1.41223 1.22278 0.95249 0.97524 0.91208 1.22216 0.93887 0.90207 1.01137 1.61749 1.17834 1.00833 1.43819 1.21870 0.96350 0.89343 1.01183 1.19639 0.89543 0.82848 0.84133 1.90518 1.18741 1.81700 1.53255 1.42217 1.09520 1.05986 1.65297 1.19419 0.92985 0.84828 1.46033 0.86274 1.25043 0.98080 0.95447 0.97647 1.69621 1.33510 1.00559 1.48437 0.86670 0.84821 0.78974 0.78904 1.19607 1.20205 1.19528 1.22380 0.96872 0.97620 0.90592 1.22355 0.93539 0.89314 1.01791 1.21194 0.93713 0.97945 1.02224 1.21097 0.99874 0.91990 1.06894 0.92760 0.92750 0.88434 0.85197 0.85114 0.92861 0.89919 0.89953 0.94098 0.93219 0.89147 0.79716 0.91621 0.94843 0.87073 0.89913 0.92430 0.84974 0.85536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.24 10.50 -19.75 -0.21 -3.45 16 3 C 0.09 1.01 6.69 -39.24 -0.26 0.75 16 4 C -0.13 -1.30 9.98 -39.46 -0.39 -1.69 16 5 C -0.10 -1.07 9.19 -39.40 -0.36 -1.44 16 6 C 0.08 0.98 5.64 -83.69 -0.47 0.51 16 7 N -0.49 -6.09 4.76 -170.89 -0.81 -6.90 16 8 C 0.06 0.72 5.38 -3.77 -0.02 0.70 16 9 C 0.05 0.66 5.61 -3.76 -0.02 0.64 16 10 N -0.52 -8.20 4.44 -235.90 -1.05 -9.25 16 11 C 0.04 0.73 5.45 -4.98 -0.03 0.70 16 12 C 0.45 10.09 7.48 -10.99 -0.08 10.00 16 13 O -0.56 -14.57 13.92 5.55 0.08 -14.50 16 14 N -0.59 -13.89 5.09 -10.96 -0.06 -13.94 16 15 C -0.30 -8.50 10.16 -14.93 -0.15 -8.65 16 16 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 17 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 18 N -0.88 -25.61 13.96 55.50 0.77 -24.83 16 19 Si 0.88 19.23 27.74 -169.99 -4.71 14.52 16 20 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 23 C 0.05 0.84 5.26 -3.76 -0.02 0.82 16 24 C 0.06 0.77 4.30 -3.76 -0.02 0.75 16 25 C -0.13 -1.48 8.82 -39.40 -0.35 -1.83 16 26 C -0.18 -1.86 9.03 -39.46 -0.36 -2.22 16 27 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 28 H 0.05 0.31 7.66 -51.93 -0.40 -0.08 16 29 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.13 1.14 7.18 -52.49 -0.38 0.77 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.76 6.82 -51.93 -0.35 0.41 16 34 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 35 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 37 H 0.09 1.29 8.03 -51.93 -0.42 0.88 16 38 H 0.37 7.65 5.76 -40.82 -0.24 7.41 16 39 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.11 2.11 5.85 -51.93 -0.30 1.80 16 42 H 0.08 1.02 7.16 -51.93 -0.37 0.65 16 43 H 0.06 0.84 7.60 -51.93 -0.39 0.45 16 44 H 0.13 1.43 5.81 -52.49 -0.30 1.13 16 45 H 0.13 1.05 6.29 -52.49 -0.33 0.72 16 LS Contribution 357.75 15.07 5.39 5.39 Total: -1.00 -32.86 357.75 -8.63 -41.49 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -6.39 Total: 10.22 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -1.64 Total: 1.24 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: -1.14 Total: -54.92 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.13 Total: -17.94 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.71 Total: 14.52 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.86 -8.63 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728153292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.128 kcal (2) G-P(sol) polarization free energy of solvation -32.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds