Wall clock time and date at job start Fri Apr 10 2020 18:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36004 * 117.00354 * 2 1 4 4 C 1.38706 * 119.97907 * 179.97438 * 3 2 1 5 5 C 1.38110 * 120.01536 * 180.02562 * 4 3 2 6 6 C 1.38862 * 119.98046 * 359.97438 * 5 4 3 7 7 N 1.39945 * 120.01610 * 180.02562 * 6 5 4 8 8 C 1.46954 * 111.00063 * 56.19754 * 7 6 5 9 9 C 1.53057 * 109.36263 * 183.18830 * 8 7 6 10 10 N 1.46956 * 109.36162 * 301.59585 * 9 8 7 11 11 C 1.46899 * 110.99677 * 183.18894 * 10 9 8 12 12 C 1.50698 * 109.47292 * 170.00200 * 11 10 9 13 13 O 1.21291 * 119.99881 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00178 * 180.02562 * 12 11 10 15 15 C 1.37103 * 119.99905 * 179.97438 * 14 12 11 16 16 H 1.07997 * 119.99941 * 0.02562 * 15 14 12 17 17 C 1.38952 * 119.99745 * 179.97438 * 15 14 12 18 18 N 1.31407 * 119.99668 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 120.00293 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47316 * 89.99640 * 19 17 15 21 21 H 1.48503 * 109.47313 * 210.00034 * 19 17 15 22 22 H 1.48503 * 109.46927 * 329.99497 * 19 17 15 23 23 C 1.46954 * 110.88042 * 59.32472 * 10 9 8 24 24 C 1.46956 * 110.99589 * 179.97438 * 7 6 5 25 25 C 1.38863 * 119.96228 * 0.26874 * 6 5 4 26 26 C 1.38104 * 119.97974 * 359.47850 * 25 6 5 27 27 H 1.08999 * 109.47222 * 300.00891 * 1 2 3 28 28 H 1.09005 * 109.46716 * 60.00547 * 1 2 3 29 29 H 1.08993 * 109.47513 * 179.97438 * 1 2 3 30 30 H 1.07995 * 119.98846 * 0.02562 * 4 3 2 31 31 H 1.08001 * 120.00622 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.49355 * 63.21956 * 8 7 6 33 33 H 1.09004 * 109.48943 * 303.15407 * 8 7 6 34 34 H 1.09002 * 109.48707 * 181.63135 * 9 8 7 35 35 H 1.09002 * 109.48655 * 61.56567 * 9 8 7 36 36 H 1.09003 * 109.47063 * 289.99903 * 11 10 9 37 37 H 1.09002 * 109.47208 * 50.00081 * 11 10 9 38 38 H 0.96996 * 120.00222 * 359.97438 * 14 12 11 39 39 H 0.97005 * 119.99849 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.49355 * 60.64341 * 23 10 9 41 41 H 1.09003 * 109.49032 * 180.68883 * 23 10 9 42 42 H 1.09002 * 109.48908 * 56.84632 * 24 7 6 43 43 H 1.09002 * 109.49369 * 296.77504 * 24 7 6 44 44 H 1.07997 * 120.00779 * 179.70754 * 25 6 5 45 45 H 1.08000 * 119.99066 * 180.25367 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 3.4317 1.2838 0.0005 5 6 4.0595 2.5139 0.0011 6 6 3.3037 3.6788 0.0005 7 7 3.9391 4.9256 0.0005 8 6 4.8587 5.0481 -1.1391 9 6 5.5906 6.3899 -1.0588 10 7 4.6073 7.4820 -1.0595 11 6 5.2742 8.7909 -1.0595 12 6 4.2558 9.8737 -1.3069 13 8 3.0891 9.5836 -1.4679 14 7 4.6414 11.1643 -1.3503 15 6 3.7149 12.1494 -1.5759 16 1 2.6760 11.8911 -1.7184 17 6 4.1124 13.4801 -1.6201 18 7 3.2243 14.4243 -1.8358 19 14 5.9092 13.9269 -1.3728 20 1 6.6027 13.9345 -2.6859 21 1 6.0039 15.2740 -0.7551 22 1 6.5496 12.9272 -0.4806 23 6 3.6876 7.3596 0.0802 24 6 2.9558 6.0177 -0.0007 25 6 1.9170 3.6057 0.0051 26 6 1.2908 2.3748 -0.0007 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 4.0193 0.3777 0.0005 31 1 5.1381 2.5698 0.0019 32 1 4.2934 4.9973 -2.0697 33 1 5.5847 4.2355 -1.1096 34 1 6.2519 6.4955 -1.9187 35 1 6.1775 6.4296 -0.1411 36 1 5.7519 8.9552 -0.0935 37 1 6.0282 8.8145 -1.8463 38 1 5.5744 11.3963 -1.2218 39 1 3.5019 15.3532 -1.8670 40 1 4.2529 7.4103 1.0107 41 1 2.9619 8.1723 0.0508 42 1 2.2941 5.9123 0.8591 43 1 2.3691 5.9779 -0.9185 44 1 1.3284 4.5112 0.0095 45 1 0.2123 2.3177 -0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728153292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:31 Heat of formation + Delta-G solvation = -36.584725 kcal Electronic energy + Delta-G solvation = -26275.960166 eV Core-core repulsion = 22486.602192 eV Total energy + Delta-G solvation = -3789.357975 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.57075 -40.65476 -39.87376 -38.15668 -36.13748 -35.57357 -33.74430 -32.66476 -31.51456 -31.09384 -29.19457 -27.93058 -26.70361 -25.27845 -24.92137 -22.92081 -22.38494 -21.27993 -20.82255 -20.19962 -19.22827 -18.04604 -17.69186 -17.20647 -16.84716 -16.61087 -16.40832 -16.23389 -15.88739 -15.59250 -15.43060 -15.33115 -15.10520 -14.86364 -14.56775 -14.34481 -14.16109 -13.90778 -13.55163 -13.48506 -13.18425 -12.93941 -12.80663 -12.62648 -12.40660 -12.28266 -12.16618 -12.08344 -11.97050 -11.88512 -11.57633 -11.44532 -10.39663 -10.29612 -10.22332 -9.97342 -9.23239 -8.50081 -8.40314 -6.00803 0.35170 0.43385 1.30849 1.36378 1.45057 1.97081 2.23808 2.41714 2.56626 2.64621 2.91160 3.14810 3.21616 3.74765 3.85342 3.91154 4.02572 4.12639 4.19294 4.25593 4.28022 4.37847 4.39317 4.40016 4.44383 4.52175 4.56244 4.56773 4.61454 4.73163 4.76994 4.87728 4.96255 4.97578 5.05876 5.12897 5.27994 5.36936 5.53880 5.62381 5.87689 5.95437 6.01318 6.17039 6.22930 6.50619 6.61106 6.89864 7.41385 7.98759 8.77307 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.034505 B = 0.002236 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.286365 B =12518.655432 C =13160.834975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.335 6.335 3 C 0.087 3.913 4 C -0.132 4.132 5 C -0.099 4.099 6 C 0.065 3.935 7 N -0.488 5.488 8 C 0.063 3.937 9 C 0.057 3.943 10 N -0.540 5.540 11 C 0.056 3.944 12 C 0.451 3.549 13 O -0.606 6.606 14 N -0.592 5.592 15 C -0.325 4.325 16 H 0.055 0.945 17 C -0.017 4.017 18 N -0.935 5.935 19 Si 0.965 3.035 20 H -0.257 1.257 21 H -0.276 1.276 22 H -0.231 1.231 23 C 0.059 3.941 24 C 0.067 3.933 25 C -0.144 4.144 26 C -0.184 4.184 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.119 0.881 30 H 0.148 0.852 31 H 0.151 0.849 32 H 0.037 0.963 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.124 0.876 38 H 0.389 0.611 39 H 0.278 0.722 40 H 0.041 0.959 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.038 0.962 44 H 0.128 0.872 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.490 -27.344 5.112 28.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.042 3.958 4 C -0.151 4.151 5 C -0.119 4.119 6 C -0.032 4.032 7 N -0.205 5.205 8 C -0.063 4.063 9 C -0.071 4.071 10 N -0.266 5.266 11 C -0.075 4.075 12 C 0.239 3.761 13 O -0.490 6.490 14 N -0.234 5.234 15 C -0.454 4.454 16 H 0.073 0.927 17 C -0.216 4.216 18 N -0.576 5.576 19 Si 0.785 3.215 20 H -0.181 1.181 21 H -0.202 1.202 22 H -0.154 1.154 23 C -0.069 4.069 24 C -0.060 4.060 25 C -0.165 4.165 26 C -0.204 4.204 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.137 0.863 30 H 0.165 0.835 31 H 0.169 0.831 32 H 0.056 0.944 33 H 0.130 0.870 34 H 0.122 0.878 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.142 0.858 38 H 0.225 0.775 39 H 0.088 0.912 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.056 0.944 44 H 0.145 0.855 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.771 -27.457 4.964 28.493 hybrid contribution -0.142 1.302 0.114 1.315 sum 5.629 -26.155 5.079 27.231 Atomic orbital electron populations 1.23278 0.76927 1.05407 1.01874 1.86043 1.23011 1.26710 1.89197 1.19151 0.92857 0.84379 0.99450 1.20537 0.91399 0.98831 1.04338 1.20785 1.00641 0.89499 1.00977 1.19092 0.92103 0.90353 1.01691 1.59500 1.18786 1.00481 1.41697 1.22376 0.95419 0.98314 0.90184 1.22331 0.93262 0.88746 1.02730 1.61698 1.19285 1.01616 1.43996 1.21809 0.94593 0.87375 1.03718 1.20899 0.90205 0.83561 0.81440 1.90512 1.21488 1.82567 1.54387 1.42040 1.09608 1.05651 1.66123 1.18982 0.91517 0.86849 1.48091 0.92692 1.26125 1.04666 0.94451 0.96333 1.69808 1.36923 1.01282 1.49611 0.85357 0.76777 0.79258 0.80071 1.18124 1.20164 1.15449 1.22170 0.96350 0.97230 0.91170 1.22154 0.93588 0.89142 1.01130 1.21285 0.93998 0.98294 1.02894 1.21263 1.00805 0.91631 1.06668 0.92122 0.92270 0.86261 0.83464 0.83132 0.94449 0.86998 0.87752 0.92792 0.90481 0.85766 0.77528 0.91211 0.94050 0.91264 0.89342 0.94364 0.85456 0.84065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -6.25 10.50 -93.60 -0.98 -7.23 16 3 C 0.09 1.76 6.69 22.49 0.15 1.91 16 4 C -0.13 -2.44 9.98 22.35 0.22 -2.22 16 5 C -0.10 -1.84 9.19 22.39 0.21 -1.64 16 6 C 0.06 1.45 5.64 38.14 0.22 1.67 16 7 N -0.49 -11.45 4.76 -694.58 -3.31 -14.76 16 8 C 0.06 1.28 5.38 86.31 0.46 1.75 16 9 C 0.06 1.19 5.61 86.31 0.48 1.67 16 10 N -0.54 -16.31 4.44 -900.26 -4.00 -20.31 16 11 C 0.06 1.70 5.45 85.56 0.47 2.17 16 12 C 0.45 20.23 7.48 87.66 0.66 20.88 16 13 O -0.61 -33.18 13.92 -3.06 -0.04 -33.22 16 14 N -0.59 -27.76 5.09 -306.99 -1.56 -29.32 16 15 C -0.33 -19.01 10.16 84.04 0.85 -18.15 16 16 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16 17 C -0.02 -0.96 5.50 84.93 0.47 -0.50 16 18 N -0.94 -56.52 13.96 21.66 0.30 -56.22 16 19 Si 0.97 38.68 27.74 68.60 1.90 40.58 16 20 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 21 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 22 H -0.23 -7.76 6.52 99.48 0.65 -7.11 16 23 C 0.06 1.87 5.26 86.31 0.45 2.32 16 24 C 0.07 1.85 4.30 86.31 0.37 2.22 16 25 C -0.14 -3.26 8.82 22.39 0.20 -3.06 16 26 C -0.18 -3.71 9.03 22.35 0.20 -3.51 16 27 H 0.06 0.60 7.66 -2.39 -0.02 0.58 16 28 H 0.06 0.60 7.66 -2.38 -0.02 0.59 16 29 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 31 H 0.15 2.11 7.18 -2.91 -0.02 2.09 16 32 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.11 1.65 6.82 -2.39 -0.02 1.63 16 34 H 0.10 1.75 8.07 -2.39 -0.02 1.74 16 35 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.99 8.12 -2.39 -0.02 1.97 16 37 H 0.12 3.00 8.03 -2.39 -0.02 2.98 16 38 H 0.39 15.05 5.76 -92.71 -0.53 14.51 16 39 H 0.28 15.38 8.31 -92.70 -0.77 14.61 16 40 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.07 2.78 5.85 -2.39 -0.01 2.77 16 42 H 0.09 2.26 7.16 -2.39 -0.02 2.24 16 43 H 0.04 1.18 7.60 -2.39 -0.02 1.16 16 44 H 0.13 2.89 5.81 -2.91 -0.02 2.88 16 45 H 0.14 2.26 6.29 -2.91 -0.02 2.24 16 Total: -1.00 -77.61 357.75 -0.75 -78.36 By element: Atomic # 1 Polarization: 34.86 SS G_CDS: 0.42 Total: 35.28 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 6.52 Total: 6.85 kcal Atomic # 7 Polarization: -112.05 SS G_CDS: -8.57 Total: -120.62 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -1.03 Total: -40.45 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 1.90 Total: 40.58 kcal Total: -77.61 -0.75 -78.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728153292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.776 kcal (2) G-P(sol) polarization free energy of solvation -77.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds