Wall clock time and date at job start Fri Apr 10 2020 18:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36596 * 126.57771 * 2 1 4 4 C 1.47528 * 125.77224 * 359.97438 * 3 2 1 5 5 O 1.21598 * 119.99598 * 359.97438 * 4 3 2 6 6 N 1.34774 * 120.00057 * 179.97438 * 4 3 2 7 7 C 1.46503 * 120.00052 * 179.97438 * 6 4 3 8 8 H 1.09000 * 112.88128 * 336.35026 * 7 6 4 9 9 C 1.53954 * 113.66126 * 107.81042 * 7 6 4 10 10 C 1.53947 * 87.29254 * 89.73933 * 9 7 6 11 11 H 1.08996 * 113.66385 * 270.25732 * 10 9 7 12 12 N 1.46505 * 113.66019 * 139.20489 * 10 9 7 13 13 C 1.36938 * 120.00177 * 107.81394 * 12 10 9 14 14 H 1.08002 * 119.99779 * 359.97438 * 13 12 10 15 15 C 1.38803 * 120.00046 * 179.97438 * 13 12 10 16 16 N 1.31620 * 120.00328 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 120.00169 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46635 * 89.99991 * 17 15 13 19 19 H 1.48497 * 109.47234 * 210.00245 * 17 15 13 20 20 H 1.48501 * 109.46615 * 330.00721 * 17 15 13 21 21 C 1.52903 * 113.66383 * 204.99902 * 7 6 4 22 22 C 1.52907 * 121.13680 * 144.70721 * 21 7 6 23 23 C 1.53951 * 86.78417 * 209.38184 * 22 21 7 24 24 C 1.52911 * 121.13842 * 36.14502 * 21 7 6 25 25 N 1.34394 * 108.45958 * 179.97438 * 3 2 1 26 26 N 1.28764 * 109.52320 * 0.02562 * 25 3 2 27 27 N 1.34810 * 126.58132 * 179.97438 * 2 1 3 28 28 C 1.46502 * 126.59482 * 0.05567 * 27 2 1 29 29 H 1.08999 * 109.47087 * 89.99964 * 1 2 3 30 30 H 1.08995 * 109.46851 * 209.99560 * 1 2 3 31 31 H 1.08994 * 109.47141 * 329.99954 * 1 2 3 32 32 H 0.97002 * 119.99733 * 359.97438 * 6 4 3 33 33 H 1.09004 * 113.57856 * 204.34567 * 9 7 6 34 34 H 1.09001 * 113.58082 * 335.13450 * 9 7 6 35 35 H 0.97004 * 119.99581 * 287.80861 * 12 10 9 36 36 H 0.96998 * 120.00677 * 179.97438 * 16 15 13 37 37 H 1.08994 * 113.66620 * 323.85428 * 22 21 7 38 38 H 1.09004 * 113.66081 * 94.90989 * 22 21 7 39 39 H 1.09003 * 113.57447 * 270.13307 * 23 22 21 40 40 H 1.09000 * 113.65091 * 139.35049 * 23 22 21 41 41 H 1.08998 * 113.66474 * 265.09494 * 24 21 7 42 42 H 1.09005 * 113.66104 * 36.05263 * 24 21 7 43 43 H 1.08999 * 109.47198 * 270.00361 * 28 27 2 44 44 H 1.09001 * 109.46965 * 29.99989 * 28 27 2 45 45 H 1.09003 * 109.47025 * 149.99914 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5028 -0.0005 5 8 0.6859 2.7628 -0.0015 6 7 2.7816 3.4988 0.0000 7 6 2.3374 4.8949 -0.0011 8 1 1.3328 5.0197 -0.4051 9 6 2.5596 5.6150 1.3414 10 6 3.9475 6.0189 0.8117 11 1 4.7306 5.2962 1.0410 12 7 4.3256 7.3950 1.1428 13 6 5.2899 7.6322 2.0858 14 1 5.7714 6.8047 2.5857 15 6 5.6485 8.9360 2.3990 16 7 5.0613 9.9444 1.7902 17 14 6.9634 9.2596 3.6859 18 1 8.2946 9.3144 3.0302 19 1 6.6892 10.5545 4.3589 20 1 6.9514 8.1667 4.6913 21 6 3.3615 5.8643 -0.5922 22 6 2.9202 7.0830 -1.4033 23 6 4.2516 6.9500 -2.1648 24 6 4.2411 5.4604 -1.7760 25 7 3.5983 0.6790 0.0006 26 7 3.6299 -0.6082 0.0004 27 7 2.3105 -1.0825 0.0005 28 6 1.8864 -2.4849 0.0000 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3633 0.8899 0.5138 32 1 3.7292 3.2913 0.0012 33 1 1.8899 6.4605 1.4987 34 1 2.5986 4.9406 2.1968 35 1 3.8929 8.1382 0.6940 36 1 5.3116 10.8556 2.0093 37 1 2.0420 6.9016 -2.0228 38 1 2.8429 7.9964 -0.8136 39 1 5.0695 7.5124 -1.7144 40 1 4.1609 7.1214 -3.2374 41 1 5.2190 5.0776 -1.4840 42 1 3.7346 4.8215 -2.4994 43 1 1.7804 -2.8328 1.0275 44 1 0.9298 -2.5750 -0.5146 45 1 2.6336 -3.0902 -0.5134 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078586334.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:37 Heat of formation + Delta-G solvation = 93.489165 kcal Electronic energy + Delta-G solvation = -27003.348852 eV Core-core repulsion = 23251.924055 eV Total energy + Delta-G solvation = -3751.424797 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.30763 -41.85485 -39.89214 -36.38490 -36.01298 -35.65520 -33.78459 -33.25761 -31.71537 -29.11548 -28.31653 -26.70558 -26.54667 -25.51137 -24.83577 -23.56878 -22.26985 -21.65520 -21.20966 -19.62683 -19.26628 -18.43674 -17.45787 -17.21542 -17.00987 -16.58234 -16.34766 -15.89800 -15.74993 -15.46033 -15.21290 -15.04948 -14.27093 -14.18301 -14.12504 -13.93834 -13.83150 -13.43640 -13.32364 -13.27306 -13.15554 -12.96277 -12.86586 -12.74833 -12.48952 -12.18292 -12.14095 -11.90722 -11.86069 -11.32949 -11.24804 -11.13656 -10.99440 -10.88071 -10.67871 -10.27044 -9.85779 -8.93968 -7.92579 -5.19688 0.10974 0.58595 1.13752 1.47580 1.48388 1.56799 2.06997 2.20496 2.57250 3.16786 3.38161 3.43078 3.49815 3.63376 3.68899 3.76054 3.81197 3.95193 4.03326 4.14112 4.27923 4.34337 4.40533 4.58709 4.62763 4.66255 4.66938 4.69383 4.75989 4.83173 4.87550 4.90633 5.02527 5.09037 5.11431 5.14614 5.20719 5.27806 5.50013 5.52295 5.59858 5.64625 5.68656 6.29764 6.44765 6.88912 7.13917 7.36937 8.13558 8.38197 9.30482 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.018096 B = 0.002994 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.896097 B = 9349.192616 C = 9967.078081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.133 3.867 3 C -0.133 4.133 4 C 0.607 3.393 5 O -0.558 6.558 6 N -0.685 5.685 7 C 0.151 3.849 8 H 0.102 0.898 9 C -0.170 4.170 10 C 0.176 3.824 11 H 0.073 0.927 12 N -0.718 5.718 13 C -0.241 4.241 14 H 0.072 0.928 15 C -0.072 4.072 16 N -0.967 5.967 17 Si 0.968 3.032 18 H -0.288 1.288 19 H -0.296 1.296 20 H -0.272 1.272 21 C -0.114 4.114 22 C -0.107 4.107 23 C -0.129 4.129 24 C -0.113 4.113 25 N -0.226 5.226 26 N -0.094 5.094 27 N -0.354 5.354 28 C 0.072 3.928 29 H 0.107 0.893 30 H 0.112 0.888 31 H 0.093 0.907 32 H 0.410 0.590 33 H 0.075 0.925 34 H 0.055 0.945 35 H 0.378 0.622 36 H 0.250 0.750 37 H 0.102 0.898 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.095 0.905 43 H 0.108 0.892 44 H 0.129 0.871 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.167 -26.166 -8.217 29.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.006 4.006 3 C -0.273 4.273 4 C 0.393 3.607 5 O -0.437 6.437 6 N -0.333 5.333 7 C 0.045 3.955 8 H 0.120 0.880 9 C -0.212 4.212 10 C 0.066 3.934 11 H 0.090 0.910 12 N -0.356 5.356 13 C -0.373 4.373 14 H 0.090 0.910 15 C -0.264 4.264 16 N -0.617 5.617 17 Si 0.797 3.203 18 H -0.215 1.215 19 H -0.223 1.223 20 H -0.198 1.198 21 C -0.116 4.116 22 C -0.145 4.145 23 C -0.167 4.167 24 C -0.150 4.150 25 N -0.098 5.098 26 N -0.074 5.074 27 N -0.139 5.139 28 C -0.067 4.067 29 H 0.126 0.874 30 H 0.130 0.870 31 H 0.112 0.888 32 H 0.246 0.754 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.213 0.787 36 H 0.059 0.941 37 H 0.120 0.880 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.114 0.886 43 H 0.126 0.874 44 H 0.147 0.853 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.352 -26.458 -8.068 29.534 hybrid contribution 0.369 1.051 0.881 1.421 sum -9.982 -25.406 -7.186 28.227 Atomic orbital electron populations 1.20837 0.82123 1.06300 1.05821 1.22362 0.97486 0.85701 0.95083 1.21247 0.89618 0.95506 1.20933 1.16868 0.85303 0.82966 0.75569 1.90732 1.16437 1.84000 1.52498 1.45341 1.10226 1.04759 1.72999 1.21463 0.98320 0.79110 0.96620 0.87995 1.24125 1.00667 0.99506 0.96897 1.21545 0.93241 0.86596 0.92016 0.90956 1.42509 1.44770 1.02439 1.45926 1.19654 1.12415 0.91933 1.13346 0.90966 1.25467 1.02691 0.95572 1.02691 1.69800 1.46841 0.98068 1.47035 0.85221 0.79088 0.76866 0.79079 1.21508 1.22304 1.19751 1.23371 0.96785 0.96681 0.94805 1.22487 0.98360 0.96140 0.97466 1.22647 0.97238 0.96691 1.00107 1.22609 0.99242 0.96479 0.96697 1.74580 1.19874 1.04930 1.10449 1.81897 0.98017 1.03056 1.24431 1.50625 1.05201 1.09405 1.48705 1.22725 1.04225 0.73128 1.06602 0.87433 0.86973 0.88850 0.75371 0.90592 0.92616 0.78728 0.94075 0.88000 0.93049 0.92562 0.90013 0.91962 0.88643 0.87415 0.85286 0.87064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.02 9.38 71.24 0.67 -0.35 16 2 C 0.13 2.46 7.02 41.72 0.29 2.75 16 3 C -0.13 -3.44 6.99 40.82 0.29 -3.15 16 4 C 0.61 17.59 7.82 86.69 0.68 18.27 16 5 O -0.56 -17.59 14.32 -4.03 -0.06 -17.65 16 6 N -0.68 -19.81 5.04 -444.31 -2.24 -22.05 16 7 C 0.15 4.70 4.12 45.28 0.19 4.88 16 8 H 0.10 3.18 7.46 -2.39 -0.02 3.17 16 9 C -0.17 -6.25 7.68 31.23 0.24 -6.01 16 10 C 0.18 7.08 4.27 45.28 0.19 7.28 16 11 H 0.07 2.95 8.10 -2.39 -0.02 2.93 16 12 N -0.72 -36.17 5.32 -321.56 -1.71 -37.89 16 13 C -0.24 -13.53 9.97 84.03 0.84 -12.70 16 14 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 15 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 16 N -0.97 -59.36 13.06 21.65 0.28 -59.08 16 17 Si 0.97 46.90 29.55 68.60 2.03 48.93 16 18 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 19 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 20 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 21 C -0.11 -3.72 0.92 -52.32 -0.05 -3.76 16 22 C -0.11 -3.42 7.47 30.88 0.23 -3.19 16 23 C -0.13 -4.05 8.08 31.23 0.25 -3.79 16 24 C -0.11 -3.26 7.49 30.89 0.23 -3.03 16 25 N -0.23 -6.31 12.04 -49.99 -0.60 -6.91 16 26 N -0.09 -2.31 13.78 37.02 0.51 -1.80 16 27 N -0.35 -5.65 4.03 -355.09 -1.43 -7.08 16 28 C 0.07 0.25 11.18 127.77 1.43 1.68 16 29 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.11 0.38 7.82 -2.39 -0.02 0.36 16 31 H 0.09 1.53 6.43 -2.39 -0.02 1.51 16 32 H 0.41 11.62 8.30 -92.71 -0.77 10.85 16 33 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 34 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.38 20.28 5.92 -92.71 -0.55 19.73 16 36 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 37 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.05 1.95 6.42 -2.38 -0.02 1.94 16 39 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 43 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 44 H 0.13 -0.35 7.76 -2.39 -0.02 -0.37 16 45 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 Total: -1.00 -74.04 372.14 2.43 -71.61 By element: Atomic # 1 Polarization: 37.04 SS G_CDS: -0.29 Total: 36.75 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 5.94 Total: -4.83 kcal Atomic # 7 Polarization: -129.62 SS G_CDS: -5.19 Total: -134.81 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.06 Total: -17.65 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -74.04 2.43 -71.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078586334.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.098 kcal (2) G-P(sol) polarization free energy of solvation -74.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds