Wall clock time and date at job start Fri Apr 10 2020 18:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30829 * 125.96333 * 2 1 4 4 C 1.33244 * 109.83175 * 180.19536 * 3 2 1 5 5 C 1.50700 * 125.52550 * 179.85959 * 4 3 2 6 6 C 1.50697 * 109.46617 * 269.71172 * 5 4 3 7 7 O 1.21283 * 120.00521 * 359.73030 * 6 5 4 8 8 N 1.34784 * 119.99774 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99893 * 179.72962 * 8 6 5 10 10 H 1.08991 * 112.88719 * 26.83832 * 9 8 6 11 11 C 1.53955 * 113.65676 * 255.49407 * 9 8 6 12 12 C 1.53952 * 87.29427 * 270.26312 * 11 9 8 13 13 H 1.09000 * 113.66375 * 89.83157 * 12 11 9 14 14 N 1.46500 * 113.66250 * 220.79516 * 12 11 9 15 15 C 1.36931 * 120.00069 * 255.49517 * 14 12 11 16 16 H 1.07997 * 120.00300 * 0.02562 * 15 14 12 17 17 C 1.38815 * 120.00092 * 180.02562 * 15 14 12 18 18 N 1.31620 * 119.99941 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00017 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47153 * 90.00215 * 19 17 15 21 21 H 1.48501 * 109.46903 * 210.00062 * 19 17 15 22 22 H 1.48503 * 109.47367 * 329.99893 * 19 17 15 23 23 C 1.52906 * 113.66158 * 158.31142 * 9 8 6 24 24 C 1.52913 * 121.13858 * 323.84519 * 23 9 8 25 25 C 1.53955 * 86.78283 * 209.38119 * 24 23 9 26 26 C 1.52912 * 121.13914 * 215.28521 * 23 9 8 27 27 N 1.30716 * 108.94232 * 359.58908 * 4 3 2 28 28 N 1.34435 * 125.95996 * 179.75562 * 2 1 3 29 29 H 0.96997 * 126.82149 * 359.93221 * 28 2 1 30 30 H 1.09005 * 109.47335 * 270.24390 * 1 2 3 31 31 H 1.09004 * 109.46991 * 30.24701 * 1 2 3 32 32 H 1.09006 * 109.47377 * 150.24353 * 1 2 3 33 33 H 1.09001 * 109.46798 * 149.72063 * 5 4 3 34 34 H 1.08993 * 109.47546 * 29.71616 * 5 4 3 35 35 H 0.97005 * 119.99846 * 359.72750 * 8 6 5 36 36 H 1.08997 * 113.58538 * 24.86529 * 11 9 8 37 37 H 1.09001 * 113.57453 * 155.66172 * 11 9 8 38 38 H 0.97004 * 120.00075 * 75.49789 * 14 12 11 39 39 H 0.97001 * 120.00296 * 179.97438 * 18 17 15 40 40 H 1.08995 * 113.66578 * 323.85187 * 24 23 9 41 41 H 1.09002 * 113.66302 * 94.90976 * 24 23 9 42 42 H 1.09008 * 113.58018 * 270.13298 * 25 24 23 43 43 H 1.08998 * 113.65538 * 139.35415 * 25 24 23 44 44 H 1.08997 * 113.66355 * 265.09722 * 26 23 9 45 45 H 1.09005 * 113.66042 * 36.05611 * 26 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5553 0.6887 -0.0043 5 6 4.7372 1.6236 -0.0087 6 6 5.1306 1.9291 -1.4310 7 8 4.5153 1.4323 -2.3505 8 7 6.1702 2.7497 -1.6812 9 6 6.5564 3.0419 -3.0638 10 1 5.7252 2.9552 -3.7634 11 6 7.8275 2.3025 -3.5196 12 6 8.6282 3.5115 -3.0026 13 1 8.9244 3.4253 -1.9572 14 7 9.7361 3.9010 -3.8785 15 6 11.0245 3.5950 -3.5300 16 1 11.2239 3.0662 -2.6097 17 6 12.0743 3.9645 -4.3597 18 7 11.8313 4.6094 -5.4810 19 14 13.8318 3.5464 -3.8846 20 1 14.1908 2.2157 -4.4373 21 1 14.7511 4.5751 -4.4343 22 1 13.9509 3.5163 -2.4047 23 6 7.3578 4.3351 -3.2168 24 6 7.0547 5.5601 -2.3532 25 6 7.5609 6.4094 -3.5332 26 6 7.1920 5.2272 -4.4476 27 7 3.6194 -0.6169 0.0018 28 7 2.2964 -1.0881 0.0046 29 1 2.0093 -2.0146 0.0095 30 1 -0.3634 0.0044 1.0277 31 1 -0.3633 0.8878 -0.5177 32 1 -0.3634 -0.8922 -0.5101 33 1 5.5745 1.1531 0.5068 34 1 4.4703 2.5492 0.5013 35 1 6.6626 3.1467 -0.9457 36 1 8.0195 1.3834 -2.9660 37 1 7.8898 2.1677 -4.5994 38 1 9.5570 4.3756 -4.7053 39 1 12.5649 4.8680 -6.0606 40 1 5.9941 5.6942 -2.1410 41 1 7.6788 5.6327 -1.4625 42 1 8.6309 6.6143 -3.4957 43 1 6.9655 7.3040 -3.7154 44 1 7.9257 5.0337 -5.2301 45 1 6.1702 5.2664 -4.8250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078621285.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:42 Heat of formation + Delta-G solvation = 102.597001 kcal Electronic energy + Delta-G solvation = -26532.748578 eV Core-core repulsion = 22781.718727 eV Total energy + Delta-G solvation = -3751.029851 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.36609 -40.56599 -38.87759 -34.99273 -34.01603 -33.87009 -32.60469 -32.28332 -30.36263 -29.47346 -27.93001 -25.42917 -24.66534 -24.09154 -22.63059 -21.78481 -21.21058 -20.32796 -19.88224 -18.18067 -17.88685 -17.34341 -16.84578 -15.92710 -15.75697 -15.38834 -15.05654 -14.74851 -14.44010 -14.27291 -13.94922 -13.65662 -13.41614 -13.16768 -13.07476 -12.70065 -12.51112 -12.23874 -12.05418 -11.95881 -11.70773 -11.63707 -11.31407 -10.87766 -10.79513 -10.58290 -10.38713 -10.24344 -10.15853 -10.10841 -9.89093 -9.78814 -9.66397 -9.52908 -9.35909 -8.83026 -8.64315 -6.95375 -5.78677 -3.06932 1.35758 2.36886 2.55102 2.71500 3.32304 3.42724 3.48135 3.49435 3.72787 4.27267 4.47831 4.57834 4.79927 4.85340 4.90363 4.97936 5.06087 5.13352 5.16085 5.27622 5.31090 5.35448 5.40291 5.48571 5.72352 5.87468 5.98404 6.01248 6.04543 6.09243 6.14523 6.16726 6.23403 6.33615 6.45774 6.54939 6.60373 6.70381 6.79484 6.91038 6.96794 7.10674 7.64744 7.69301 7.87341 8.33595 8.40222 9.51750 10.09515 10.44283 11.43611 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.021664 B = 0.002598 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.178818 B =10774.013778 C =11564.583902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.282 3.718 3 N -0.531 5.531 4 C 0.254 3.746 5 C -0.051 4.051 6 C 0.523 3.477 7 O -0.534 6.534 8 N -0.702 5.702 9 C 0.131 3.869 10 H 0.093 0.907 11 C -0.175 4.175 12 C 0.192 3.808 13 H 0.075 0.925 14 N -0.709 5.709 15 C -0.242 4.242 16 H 0.070 0.930 17 C -0.012 4.012 18 N -0.931 5.931 19 Si 0.906 3.094 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.119 4.119 24 C -0.126 4.126 25 C -0.131 4.131 26 C -0.111 4.111 27 N -0.303 5.303 28 N -0.483 5.483 29 H 0.439 0.561 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.401 0.599 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.387 0.613 39 H 0.255 0.745 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.089 0.911 43 H 0.057 0.943 44 H 0.078 0.922 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.818 -5.383 12.985 25.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.003 3.997 3 N -0.260 5.260 4 C -0.030 4.030 5 C -0.093 4.093 6 C 0.307 3.693 7 O -0.410 6.410 8 N -0.352 5.352 9 C 0.026 3.974 10 H 0.111 0.889 11 C -0.217 4.217 12 C 0.079 3.921 13 H 0.093 0.907 14 N -0.348 5.348 15 C -0.373 4.373 16 H 0.088 0.912 17 C -0.208 4.208 18 N -0.579 5.579 19 Si 0.737 3.263 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.121 4.121 24 C -0.164 4.164 25 C -0.169 4.169 26 C -0.149 4.149 27 N -0.132 5.132 28 N -0.201 5.201 29 H 0.285 0.715 30 H 0.110 0.890 31 H 0.117 0.883 32 H 0.101 0.899 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.236 0.764 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.223 0.777 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.097 0.903 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.469 -5.787 12.389 25.454 hybrid contribution 0.860 -0.675 0.202 1.112 sum -20.609 -6.462 12.591 25.001 Atomic orbital electron populations 1.20388 0.83653 1.05108 1.04434 1.24359 0.96596 0.82807 0.95919 1.70290 1.01281 1.29557 1.24906 1.23248 0.92594 0.89716 0.97414 1.19916 0.93847 0.98952 0.96608 1.20085 0.80063 0.78870 0.90303 1.90724 1.53192 1.50830 1.46301 1.45514 1.32436 1.48385 1.08831 1.21697 0.96749 0.96602 0.82355 0.88895 1.24271 0.95843 0.99774 1.01798 1.21286 0.85481 0.90622 0.94685 0.90729 1.42404 1.01244 1.67425 1.23712 1.19268 0.83432 1.30338 1.04276 0.91196 1.24743 0.97943 1.01039 0.97099 1.69653 1.30909 1.44479 1.12895 0.86208 0.84963 0.77492 0.77615 1.21759 1.21817 1.20787 1.23520 0.98410 0.91716 0.98481 1.22652 1.00101 0.96242 0.97356 1.22743 1.02025 0.96000 0.96109 1.22460 1.01078 0.95033 0.96285 1.77999 0.96629 1.12253 1.26303 1.47931 1.04280 1.09993 1.57900 0.71543 0.89022 0.88290 0.89886 0.86334 0.85970 0.76449 0.92318 0.89685 0.77695 0.93476 0.90831 0.91660 0.89216 0.92467 0.90295 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 10.51 36.00 0.38 0.04 16 2 C 0.28 2.74 8.24 -155.69 -1.28 1.46 16 3 N -0.53 -6.95 11.19 -8.16 -0.09 -7.04 16 4 C 0.25 3.42 6.63 -156.85 -1.04 2.38 16 5 C -0.05 -0.55 6.33 -29.04 -0.18 -0.74 16 6 C 0.52 7.46 7.82 -10.98 -0.09 7.37 16 7 O -0.53 -10.05 15.67 5.56 0.09 -9.97 16 8 N -0.70 -9.15 5.07 -53.37 -0.27 -9.42 16 9 C 0.13 2.06 4.08 -67.48 -0.28 1.79 16 10 H 0.09 1.59 7.54 -51.93 -0.39 1.20 16 11 C -0.17 -3.17 7.68 -25.75 -0.20 -3.37 16 12 C 0.19 3.65 4.28 -67.48 -0.29 3.36 16 13 H 0.07 1.39 8.12 -51.93 -0.42 0.97 16 14 N -0.71 -17.06 5.35 -52.99 -0.28 -17.34 16 15 C -0.24 -6.54 9.98 -15.06 -0.15 -6.69 16 16 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 17 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 18 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 19 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C -0.12 -1.88 0.91 -154.71 -0.14 -2.02 16 24 C -0.13 -1.75 7.43 -26.28 -0.20 -1.94 16 25 C -0.13 -2.01 8.08 -25.75 -0.21 -2.22 16 26 C -0.11 -1.78 7.45 -26.28 -0.20 -1.98 16 27 N -0.30 -4.10 12.80 32.42 0.41 -3.69 16 28 N -0.48 -4.68 7.45 32.62 0.24 -4.44 16 29 H 0.44 2.49 8.96 -182.34 -1.63 0.86 16 30 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.40 4.19 8.54 -40.82 -0.35 3.85 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 38 H 0.39 9.88 5.86 -40.82 -0.24 9.64 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 1.46 6.42 -51.93 -0.33 1.13 16 45 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 375.67 15.07 5.66 5.66 Total: -1.00 -36.40 375.67 -10.49 -46.89 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -7.99 Total: 12.09 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -3.96 Total: -3.00 kcal Atomic # 7 Polarization: -69.55 SS G_CDS: 0.74 Total: -68.81 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.40 -10.49 -46.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078621285.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.491 kcal (2) G-P(sol) polarization free energy of solvation -36.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds