Wall clock time and date at job start Fri Apr 10 2020 18:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30829 * 125.96333 * 2 1 4 4 C 1.33244 * 109.83175 * 180.19536 * 3 2 1 5 5 C 1.50700 * 125.52550 * 179.85959 * 4 3 2 6 6 C 1.50697 * 109.46617 * 269.71172 * 5 4 3 7 7 O 1.21283 * 120.00521 * 359.73030 * 6 5 4 8 8 N 1.34784 * 119.99774 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99893 * 179.72962 * 8 6 5 10 10 H 1.08991 * 112.88719 * 26.83832 * 9 8 6 11 11 C 1.53955 * 113.65676 * 255.49407 * 9 8 6 12 12 C 1.53952 * 87.29427 * 270.26312 * 11 9 8 13 13 H 1.09000 * 113.66375 * 89.83157 * 12 11 9 14 14 N 1.46500 * 113.66250 * 220.79516 * 12 11 9 15 15 C 1.36931 * 120.00069 * 255.49517 * 14 12 11 16 16 H 1.07997 * 120.00300 * 0.02562 * 15 14 12 17 17 C 1.38815 * 120.00092 * 180.02562 * 15 14 12 18 18 N 1.31620 * 119.99941 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00017 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47153 * 90.00215 * 19 17 15 21 21 H 1.48501 * 109.46903 * 210.00062 * 19 17 15 22 22 H 1.48503 * 109.47367 * 329.99893 * 19 17 15 23 23 C 1.52906 * 113.66158 * 158.31142 * 9 8 6 24 24 C 1.52913 * 121.13858 * 323.84519 * 23 9 8 25 25 C 1.53955 * 86.78283 * 209.38119 * 24 23 9 26 26 C 1.52912 * 121.13914 * 215.28521 * 23 9 8 27 27 N 1.30716 * 108.94232 * 359.58908 * 4 3 2 28 28 N 1.34435 * 125.95996 * 179.75562 * 2 1 3 29 29 H 0.96997 * 126.82149 * 359.93221 * 28 2 1 30 30 H 1.09005 * 109.47335 * 270.24390 * 1 2 3 31 31 H 1.09004 * 109.46991 * 30.24701 * 1 2 3 32 32 H 1.09006 * 109.47377 * 150.24353 * 1 2 3 33 33 H 1.09001 * 109.46798 * 149.72063 * 5 4 3 34 34 H 1.08993 * 109.47546 * 29.71616 * 5 4 3 35 35 H 0.97005 * 119.99846 * 359.72750 * 8 6 5 36 36 H 1.08997 * 113.58538 * 24.86529 * 11 9 8 37 37 H 1.09001 * 113.57453 * 155.66172 * 11 9 8 38 38 H 0.97004 * 120.00075 * 75.49789 * 14 12 11 39 39 H 0.97001 * 120.00296 * 179.97438 * 18 17 15 40 40 H 1.08995 * 113.66578 * 323.85187 * 24 23 9 41 41 H 1.09002 * 113.66302 * 94.90976 * 24 23 9 42 42 H 1.09008 * 113.58018 * 270.13298 * 25 24 23 43 43 H 1.08998 * 113.65538 * 139.35415 * 25 24 23 44 44 H 1.08997 * 113.66355 * 265.09722 * 26 23 9 45 45 H 1.09005 * 113.66042 * 36.05611 * 26 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5553 0.6887 -0.0043 5 6 4.7372 1.6236 -0.0087 6 6 5.1306 1.9291 -1.4310 7 8 4.5153 1.4323 -2.3505 8 7 6.1702 2.7497 -1.6812 9 6 6.5564 3.0419 -3.0638 10 1 5.7252 2.9552 -3.7634 11 6 7.8275 2.3025 -3.5196 12 6 8.6282 3.5115 -3.0026 13 1 8.9244 3.4253 -1.9572 14 7 9.7361 3.9010 -3.8785 15 6 11.0245 3.5950 -3.5300 16 1 11.2239 3.0662 -2.6097 17 6 12.0743 3.9645 -4.3597 18 7 11.8313 4.6094 -5.4810 19 14 13.8318 3.5464 -3.8846 20 1 14.1908 2.2157 -4.4373 21 1 14.7511 4.5751 -4.4343 22 1 13.9509 3.5163 -2.4047 23 6 7.3578 4.3351 -3.2168 24 6 7.0547 5.5601 -2.3532 25 6 7.5609 6.4094 -3.5332 26 6 7.1920 5.2272 -4.4476 27 7 3.6194 -0.6169 0.0018 28 7 2.2964 -1.0881 0.0046 29 1 2.0093 -2.0146 0.0095 30 1 -0.3634 0.0044 1.0277 31 1 -0.3633 0.8878 -0.5177 32 1 -0.3634 -0.8922 -0.5101 33 1 5.5745 1.1531 0.5068 34 1 4.4703 2.5492 0.5013 35 1 6.6626 3.1467 -0.9457 36 1 8.0195 1.3834 -2.9660 37 1 7.8898 2.1677 -4.5994 38 1 9.5570 4.3756 -4.7053 39 1 12.5649 4.8680 -6.0606 40 1 5.9941 5.6942 -2.1410 41 1 7.6788 5.6327 -1.4625 42 1 8.6309 6.6143 -3.4957 43 1 6.9655 7.3040 -3.7154 44 1 7.9257 5.0337 -5.2301 45 1 6.1702 5.2664 -4.8250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078621285.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:41 Heat of formation + Delta-G solvation = 76.404877 kcal Electronic energy + Delta-G solvation = -26533.884353 eV Core-core repulsion = 22781.718727 eV Total energy + Delta-G solvation = -3752.165627 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.16787 -41.89956 -40.09238 -36.34796 -35.75756 -34.69467 -33.79390 -33.35256 -31.90112 -30.59928 -28.63380 -26.68462 -26.47921 -25.49157 -24.07422 -22.91164 -22.13986 -21.45478 -21.02304 -19.59789 -18.98905 -18.70333 -18.16475 -17.21165 -16.78661 -16.53301 -16.36958 -16.25050 -15.66922 -15.48729 -15.20942 -14.90079 -14.49571 -14.15885 -13.93619 -13.66128 -13.61081 -13.47318 -13.29874 -13.14195 -13.05877 -12.85044 -12.76620 -12.73030 -12.45936 -12.14781 -11.89975 -11.84126 -11.32630 -11.27647 -11.15353 -11.09836 -10.88475 -10.86853 -10.66026 -10.45471 -9.91140 -8.93838 -7.92020 -5.19281 0.56837 1.48048 1.49297 1.57310 1.60605 1.63097 1.74962 2.29887 2.57748 3.01868 3.38900 3.50603 3.54552 3.68298 3.78376 3.82865 3.94654 3.98455 4.05271 4.15575 4.29343 4.42063 4.44064 4.60646 4.66934 4.71582 4.75451 4.77107 4.89949 4.92251 5.03426 5.06348 5.11879 5.16089 5.21579 5.24633 5.28918 5.36019 5.51575 5.61724 5.66335 5.70357 6.20914 6.30094 6.58426 7.06660 7.26306 7.37075 8.14663 8.37673 9.31165 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.021664 B = 0.002598 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.178818 B =10774.013778 C =11564.583902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.285 3.715 3 N -0.567 5.567 4 C 0.236 3.764 5 C -0.045 4.045 6 C 0.524 3.476 7 O -0.583 6.583 8 N -0.688 5.688 9 C 0.151 3.849 10 H 0.082 0.918 11 C -0.175 4.175 12 C 0.180 3.820 13 H 0.085 0.915 14 N -0.721 5.721 15 C -0.238 4.238 16 H 0.077 0.923 17 C -0.076 4.076 18 N -0.969 5.969 19 Si 0.969 3.031 20 H -0.293 1.293 21 H -0.298 1.298 22 H -0.267 1.267 23 C -0.109 4.109 24 C -0.107 4.107 25 C -0.130 4.130 26 C -0.115 4.115 27 N -0.341 5.341 28 N -0.476 5.476 29 H 0.454 0.546 30 H 0.115 0.885 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.143 0.857 34 H 0.153 0.847 35 H 0.418 0.582 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.377 0.623 39 H 0.249 0.751 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.080 0.920 44 H 0.046 0.954 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.653 -5.452 15.529 28.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.007 3.993 3 N -0.297 5.297 4 C -0.047 4.047 5 C -0.087 4.087 6 C 0.311 3.689 7 O -0.463 6.463 8 N -0.339 5.339 9 C 0.044 3.956 10 H 0.100 0.900 11 C -0.217 4.217 12 C 0.070 3.930 13 H 0.102 0.898 14 N -0.359 5.359 15 C -0.370 4.370 16 H 0.095 0.905 17 C -0.268 4.268 18 N -0.619 5.619 19 Si 0.799 3.201 20 H -0.220 1.220 21 H -0.225 1.225 22 H -0.192 1.192 23 C -0.112 4.112 24 C -0.145 4.145 25 C -0.168 4.168 26 C -0.153 4.153 27 N -0.171 5.171 28 N -0.196 5.196 29 H 0.303 0.697 30 H 0.133 0.867 31 H 0.116 0.884 32 H 0.128 0.872 33 H 0.161 0.839 34 H 0.170 0.830 35 H 0.255 0.745 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.211 0.789 39 H 0.058 0.942 40 H 0.118 0.882 41 H 0.093 0.907 42 H 0.076 0.924 43 H 0.099 0.901 44 H 0.065 0.935 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -23.333 -5.886 15.010 28.362 hybrid contribution 1.301 -0.740 -0.589 1.608 sum -22.032 -6.627 14.422 27.153 Atomic orbital electron populations 1.20646 0.80049 1.06327 1.06255 1.25269 0.98341 0.82035 0.93666 1.70293 1.01567 1.31227 1.26627 1.23687 0.93504 0.90055 0.97477 1.20027 0.94114 1.00256 0.94261 1.20673 0.79249 0.77735 0.91292 1.90706 1.54827 1.52634 1.48128 1.45356 1.32305 1.48137 1.08101 1.21327 0.95080 0.95483 0.83684 0.90026 1.24143 0.97593 0.99500 1.00469 1.21570 0.85268 0.91897 0.94244 0.89766 1.42568 1.01684 1.67517 1.24167 1.19669 0.84727 1.28680 1.03908 0.90514 1.25511 1.01712 1.02108 0.97488 1.69812 1.31458 1.46511 1.14163 0.85204 0.80419 0.76593 0.77934 1.22009 1.22451 1.19198 1.23277 0.95976 0.92427 0.99475 1.22625 1.01758 0.93370 0.96705 1.22655 1.00495 0.96891 0.96735 1.22525 1.01334 0.95793 0.95645 1.77878 0.98881 1.12721 1.27578 1.47874 1.03286 1.11018 1.57469 0.69727 0.86702 0.88437 0.87239 0.83933 0.82960 0.74503 0.92605 0.91897 0.78931 0.94192 0.88184 0.90679 0.92415 0.90131 0.93540 0.88652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.51 71.24 0.75 0.29 16 2 C 0.28 5.07 8.24 138.22 1.14 6.21 16 3 N -0.57 -14.10 11.19 -179.72 -2.01 -16.11 16 4 C 0.24 6.08 6.63 138.63 0.92 7.00 16 5 C -0.04 -0.88 6.33 29.10 0.18 -0.69 16 6 C 0.52 14.14 7.82 87.65 0.69 14.82 16 7 O -0.58 -21.74 15.67 -3.04 -0.05 -21.79 16 8 N -0.69 -16.47 5.07 -441.15 -2.24 -18.71 16 9 C 0.15 4.58 4.08 45.28 0.18 4.76 16 10 H 0.08 2.76 7.54 -2.39 -0.02 2.74 16 11 C -0.17 -6.41 7.68 31.23 0.24 -6.17 16 12 C 0.18 6.81 4.28 45.28 0.19 7.00 16 13 H 0.08 3.01 8.12 -2.39 -0.02 2.99 16 14 N -0.72 -35.38 5.35 -321.56 -1.72 -37.10 16 15 C -0.24 -12.95 9.98 84.04 0.84 -12.11 16 16 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 17 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 18 N -0.97 -59.13 13.06 21.65 0.28 -58.85 16 19 Si 0.97 46.10 29.55 68.60 2.03 48.12 16 20 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 21 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 23 C -0.11 -3.34 0.91 -52.31 -0.05 -3.39 16 24 C -0.11 -2.66 7.43 30.89 0.23 -2.43 16 25 C -0.13 -3.82 8.08 31.23 0.25 -3.57 16 26 C -0.11 -3.66 7.45 30.88 0.23 -3.43 16 27 N -0.34 -8.96 12.80 -51.33 -0.66 -9.62 16 28 N -0.48 -8.64 7.45 -50.71 -0.38 -9.01 16 29 H 0.45 4.51 8.96 -213.10 -1.91 2.60 16 30 H 0.11 0.24 8.14 -2.38 -0.02 0.22 16 31 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.11 0.11 8.14 -2.38 -0.02 0.09 16 33 H 0.14 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.15 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.42 7.38 8.54 -92.70 -0.79 6.59 16 36 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.38 19.99 5.86 -92.71 -0.54 19.45 16 39 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 40 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 43 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.05 1.79 6.42 -2.39 -0.02 1.77 16 45 H 0.10 2.63 8.14 -2.38 -0.02 2.61 16 Total: -1.00 -81.80 375.67 -0.68 -82.48 By element: Atomic # 1 Polarization: 38.37 SS G_CDS: -2.20 Total: 36.16 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 6.26 Total: 4.42 kcal Atomic # 7 Polarization: -142.68 SS G_CDS: -6.72 Total: -149.40 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.05 Total: -21.79 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.12 kcal Total: -81.80 -0.68 -82.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078621285.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.889 kcal (2) G-P(sol) polarization free energy of solvation -81.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds