Wall clock time and date at job start Fri Apr 10 2020 18:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30839 * 125.96316 * 2 1 4 4 C 1.33234 * 109.82962 * 180.02562 * 3 2 1 5 5 C 1.50698 * 125.52865 * 179.97438 * 4 3 2 6 6 C 1.50709 * 109.46999 * 89.99742 * 5 4 3 7 7 O 1.21280 * 119.99916 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00084 * 180.02562 * 6 5 4 9 9 C 1.46497 * 119.99930 * 180.02562 * 8 6 5 10 10 H 1.09004 * 112.95076 * 336.40754 * 9 8 6 11 11 C 1.53955 * 113.66234 * 107.81356 * 9 8 6 12 12 C 1.53957 * 87.29400 * 89.74137 * 11 9 8 13 13 H 1.09002 * 113.65635 * 270.26077 * 12 11 9 14 14 N 1.46493 * 113.66200 * 139.20574 * 12 11 9 15 15 C 1.36935 * 119.99854 * 107.81212 * 14 12 11 16 16 H 1.07998 * 120.00548 * 0.02562 * 15 14 12 17 17 C 1.38815 * 119.99685 * 179.97438 * 15 14 12 18 18 N 1.31618 * 120.00127 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99751 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.47407 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47093 * 120.00378 * 19 17 15 22 22 H 1.48505 * 109.47009 * 240.00020 * 19 17 15 23 23 C 1.52904 * 86.78379 * 24.73199 * 12 11 9 24 24 C 1.52910 * 121.13510 * 209.38616 * 23 12 11 25 25 C 1.53957 * 86.78122 * 209.38051 * 24 23 12 26 26 C 1.52909 * 121.13701 * 100.82200 * 23 12 11 27 27 N 1.30716 * 108.94974 * 0.26364 * 4 3 2 28 28 N 1.34424 * 125.96194 * 180.02562 * 2 1 3 29 29 H 0.97001 * 126.82230 * 359.97056 * 28 2 1 30 30 H 1.09004 * 109.47281 * 89.97262 * 1 2 3 31 31 H 1.08991 * 109.47172 * 209.97736 * 1 2 3 32 32 H 1.09007 * 109.47055 * 329.97700 * 1 2 3 33 33 H 1.08998 * 109.47423 * 330.00536 * 5 4 3 34 34 H 1.09001 * 109.47780 * 209.99736 * 5 4 3 35 35 H 0.96996 * 119.99770 * 0.02562 * 8 6 5 36 36 H 1.08997 * 113.57526 * 204.34081 * 11 9 8 37 37 H 1.08998 * 113.58201 * 335.13936 * 11 9 8 38 38 H 0.97002 * 120.00012 * 287.81346 * 14 12 11 39 39 H 0.97007 * 119.99662 * 179.97438 * 18 17 15 40 40 H 1.09003 * 113.66688 * 94.91189 * 24 23 12 41 41 H 1.08997 * 113.66384 * 323.85427 * 24 23 12 42 42 H 1.08998 * 113.57948 * 139.33169 * 25 24 23 43 43 H 1.09000 * 113.57875 * 270.12813 * 25 24 23 44 44 H 1.08993 * 113.65927 * 36.14497 * 26 23 12 45 45 H 1.08999 * 113.66533 * 265.08675 * 26 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 -0.0006 5 6 4.7372 1.6236 -0.0013 6 6 5.1319 1.9354 1.4194 7 8 4.5144 1.4464 2.3416 8 7 6.1710 2.7578 1.6651 9 6 6.5550 3.0605 3.0460 10 1 5.7373 2.9249 3.7540 11 6 7.8690 2.3881 3.4836 12 6 8.5974 3.6427 2.9683 13 1 8.8858 3.5810 1.9189 14 7 9.6913 4.0855 3.8363 15 6 10.9912 3.9135 3.4414 16 1 11.2100 3.4518 2.4899 17 6 12.0277 4.3336 4.2637 18 7 11.7611 4.8976 5.4226 19 14 13.8009 4.0983 3.7253 20 1 13.8310 3.4444 2.3924 21 1 14.4731 5.4199 3.6442 22 1 14.5084 3.2429 4.7117 23 6 7.2864 4.3943 3.2013 24 6 6.9084 5.6071 2.3503 25 6 6.1356 6.1197 3.5793 26 6 7.0849 5.2670 4.4407 27 7 3.6194 -0.6168 -0.0066 28 7 2.2964 -1.0880 -0.0005 29 1 2.0093 -2.0146 -0.0005 30 1 -0.3634 0.0005 -1.0277 31 1 -0.3633 -0.8901 0.5134 32 1 -0.3633 0.8898 0.5142 33 1 4.4699 2.5470 -0.5150 34 1 5.5741 1.1508 -0.5154 35 1 6.6646 3.1492 0.9275 36 1 7.9496 2.2490 4.5616 37 1 8.1050 1.4849 2.9209 38 1 9.4949 4.5005 4.6908 39 1 12.4855 5.1908 5.9973 40 1 6.2689 5.3640 1.5017 41 1 7.7587 6.2316 2.0764 42 1 6.2414 7.1918 3.7448 43 1 5.0985 5.7860 3.6125 44 1 7.9848 5.7958 4.7544 45 1 6.5864 4.7521 5.2620 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078621287.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:47 Heat of formation + Delta-G solvation = 102.121165 kcal Electronic energy + Delta-G solvation = -26528.814539 eV Core-core repulsion = 22777.764055 eV Total energy + Delta-G solvation = -3751.050485 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.37520 -40.59625 -38.86327 -35.03562 -34.04794 -33.88256 -32.61126 -32.31391 -30.36438 -29.45673 -27.94130 -25.44179 -24.71787 -24.02916 -22.70125 -21.79388 -21.16815 -20.40041 -19.91878 -18.21999 -17.85193 -17.32167 -16.98259 -15.84066 -15.66717 -15.46307 -15.11351 -14.75501 -14.46460 -14.29806 -13.95643 -13.65381 -13.41659 -13.15159 -13.08469 -12.63642 -12.55220 -12.39727 -12.09293 -11.92554 -11.77524 -11.60748 -11.33560 -10.93172 -10.81119 -10.63710 -10.39819 -10.24985 -10.15897 -10.08957 -9.91677 -9.80873 -9.69318 -9.54084 -9.31956 -8.81439 -8.69472 -6.94481 -5.78698 -3.06758 1.34827 2.35935 2.54113 2.69033 3.29659 3.42296 3.48251 3.50292 3.71737 4.26285 4.47077 4.58038 4.78970 4.82299 4.89661 4.97439 5.01965 5.09515 5.14859 5.25725 5.28970 5.35066 5.39760 5.47857 5.68387 5.88207 5.96081 6.00034 6.05917 6.10072 6.14810 6.20053 6.23466 6.25930 6.40890 6.46053 6.55160 6.68587 6.78706 6.82115 6.98132 7.09458 7.62616 7.69756 7.86539 8.30909 8.40227 9.51756 10.10160 10.44812 11.43729 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.021801 B = 0.002598 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.014689 B =10776.344293 C =11568.601784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.282 3.718 3 N -0.531 5.531 4 C 0.254 3.746 5 C -0.051 4.051 6 C 0.523 3.477 7 O -0.534 6.534 8 N -0.702 5.702 9 C 0.144 3.856 10 H 0.095 0.905 11 C -0.175 4.175 12 C 0.181 3.819 13 H 0.075 0.925 14 N -0.708 5.708 15 C -0.241 4.241 16 H 0.071 0.929 17 C -0.013 4.013 18 N -0.932 5.932 19 Si 0.906 3.094 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.125 4.125 24 C -0.122 4.122 25 C -0.140 4.140 26 C -0.105 4.105 27 N -0.303 5.303 28 N -0.482 5.482 29 H 0.439 0.561 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.402 0.598 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.387 0.613 39 H 0.255 0.745 40 H 0.059 0.941 41 H 0.085 0.915 42 H 0.062 0.938 43 H 0.072 0.928 44 H 0.097 0.903 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.109 -6.470 -12.839 26.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.003 3.997 3 N -0.260 5.260 4 C -0.030 4.030 5 C -0.093 4.093 6 C 0.308 3.692 7 O -0.410 6.410 8 N -0.353 5.353 9 C 0.039 3.961 10 H 0.113 0.887 11 C -0.218 4.218 12 C 0.068 3.932 13 H 0.093 0.907 14 N -0.346 5.346 15 C -0.372 4.372 16 H 0.089 0.911 17 C -0.209 4.209 18 N -0.580 5.580 19 Si 0.737 3.263 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.128 4.128 24 C -0.160 4.160 25 C -0.178 4.178 26 C -0.143 4.143 27 N -0.132 5.132 28 N -0.201 5.201 29 H 0.285 0.715 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.236 0.764 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.222 0.778 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.103 0.897 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.115 0.885 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.766 -6.862 -12.254 25.904 hybrid contribution 0.891 -0.567 -0.221 1.079 sum -20.875 -7.430 -12.475 25.428 Atomic orbital electron populations 1.20388 0.83646 1.05122 1.04435 1.24361 0.96601 0.82800 0.95907 1.70292 1.01273 1.29548 1.24883 1.23238 0.92596 0.89713 0.97430 1.19916 0.93863 0.98970 0.96572 1.20083 0.79988 0.78813 0.90346 1.90724 1.53049 1.51173 1.46052 1.45512 1.32526 1.48370 1.08843 1.21499 0.96907 0.95211 0.82506 0.88697 1.24296 0.95347 1.00246 1.01865 1.21391 0.86139 0.90980 0.94683 0.90707 1.42377 1.00896 1.70903 1.20473 1.19333 0.83057 1.32818 1.02040 0.91122 1.24751 0.97956 1.01410 0.96797 1.69666 1.31007 1.46270 1.11030 0.86135 0.85308 0.77217 0.77627 1.20575 1.21904 1.21910 1.23436 0.98380 0.92385 0.98571 1.22630 0.99750 0.97372 0.96230 1.22825 0.98243 0.99365 0.97329 1.22465 0.99842 0.96858 0.95125 1.78000 0.96635 1.12244 1.26337 1.47928 1.04276 1.09995 1.57887 0.71538 0.89013 0.89884 0.88284 0.85942 0.86310 0.76372 0.89679 0.92297 0.77805 0.93529 0.92193 0.89662 0.91934 0.90961 0.88464 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 10.51 36.00 0.38 0.04 16 2 C 0.28 2.72 8.24 -155.69 -1.28 1.44 16 3 N -0.53 -6.91 11.19 -8.16 -0.09 -7.00 16 4 C 0.25 3.39 6.63 -156.86 -1.04 2.35 16 5 C -0.05 -0.55 6.33 -29.03 -0.18 -0.73 16 6 C 0.52 7.41 7.82 -10.98 -0.09 7.32 16 7 O -0.53 -9.96 15.63 5.56 0.09 -9.87 16 8 N -0.70 -9.11 4.80 -53.36 -0.26 -9.37 16 9 C 0.14 2.26 4.12 -67.48 -0.28 1.98 16 10 H 0.10 1.63 7.47 -51.93 -0.39 1.24 16 11 C -0.18 -3.16 7.68 -25.74 -0.20 -3.36 16 12 C 0.18 3.44 4.27 -67.48 -0.29 3.15 16 13 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 14 N -0.71 -17.15 5.30 -52.99 -0.28 -17.43 16 15 C -0.24 -6.54 9.97 -15.06 -0.15 -6.69 16 16 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 17 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 18 N -0.93 -27.72 13.06 55.49 0.72 -27.00 16 19 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 C -0.13 -1.99 0.92 -154.71 -0.14 -2.13 16 24 C -0.12 -1.71 7.62 -26.28 -0.20 -1.91 16 25 C -0.14 -1.93 8.08 -25.74 -0.21 -2.14 16 26 C -0.11 -1.70 7.15 -26.28 -0.19 -1.89 16 27 N -0.30 -4.07 12.80 32.42 0.41 -3.65 16 28 N -0.48 -4.63 7.45 32.62 0.24 -4.39 16 29 H 0.44 2.45 8.96 -182.33 -1.63 0.82 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.12 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.40 4.19 8.42 -40.82 -0.34 3.85 16 36 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.39 9.94 6.23 -40.82 -0.25 9.68 16 39 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.06 0.73 7.58 -51.93 -0.39 0.33 16 41 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.10 1.80 7.03 -51.93 -0.36 1.43 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 375.44 15.07 5.66 5.66 Total: -1.00 -36.55 375.44 -10.48 -47.04 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -8.00 Total: 11.90 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -3.96 Total: -3.03 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: 0.75 Total: -68.85 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.55 -10.48 -47.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078621287.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.160 kcal (2) G-P(sol) polarization free energy of solvation -36.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds