Wall clock time and date at job start Fri Apr 10 2020 18:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30837 * 125.95688 * 2 1 4 4 C 1.33238 * 109.82837 * 180.12194 * 3 2 1 5 5 C 1.50704 * 125.52773 * 179.85249 * 4 3 2 6 6 C 1.50699 * 109.46834 * 269.71560 * 5 4 3 7 7 O 1.21274 * 120.00383 * 0.02562 * 6 5 4 8 8 N 1.34785 * 119.99471 * 179.97438 * 6 5 4 9 9 C 1.46505 * 119.99639 * 180.02562 * 8 6 5 10 10 H 1.09002 * 112.94744 * 23.59753 * 9 8 6 11 11 C 1.53950 * 113.66045 * 252.18907 * 9 8 6 12 12 C 1.53950 * 87.29389 * 270.26357 * 11 9 8 13 13 H 1.09001 * 113.66397 * 220.79813 * 12 11 9 14 14 N 1.46497 * 113.74763 * 89.75264 * 12 11 9 15 15 C 1.36935 * 120.00246 * 107.77229 * 14 12 11 16 16 H 1.08003 * 119.99545 * 0.02562 * 15 14 12 17 17 C 1.38806 * 120.00235 * 179.97438 * 15 14 12 18 18 N 1.31624 * 120.00007 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00082 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47106 * 60.00089 * 19 17 15 21 21 H 1.48498 * 109.47262 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47357 * 300.00186 * 19 17 15 23 23 C 1.52910 * 113.65895 * 154.99936 * 9 8 6 24 24 C 1.52907 * 121.13351 * 215.28589 * 23 9 8 25 25 C 1.53951 * 86.77862 * 100.82528 * 24 23 9 26 26 C 1.52903 * 121.13886 * 323.85243 * 23 9 8 27 27 N 1.30720 * 108.94647 * 359.58854 * 4 3 2 28 28 N 1.34428 * 125.96655 * 179.66504 * 2 1 3 29 29 H 0.96998 * 126.81926 * 0.02562 * 28 2 1 30 30 H 1.08996 * 109.47291 * 270.33027 * 1 2 3 31 31 H 1.08997 * 109.47466 * 30.33196 * 1 2 3 32 32 H 1.09003 * 109.46563 * 150.33659 * 1 2 3 33 33 H 1.08999 * 109.47031 * 149.71659 * 5 4 3 34 34 H 1.08997 * 109.46753 * 29.71592 * 5 4 3 35 35 H 0.96998 * 120.00048 * 359.97438 * 8 6 5 36 36 H 1.09001 * 113.57502 * 155.66010 * 11 9 8 37 37 H 1.08998 * 113.58006 * 24.86306 * 11 9 8 38 38 H 0.97005 * 119.99637 * 287.76929 * 14 12 11 39 39 H 0.96997 * 119.99316 * 180.02562 * 18 17 15 40 40 H 1.08995 * 113.66604 * 215.29469 * 24 23 9 41 41 H 1.08996 * 113.66613 * 346.35541 * 24 23 9 42 42 H 1.09000 * 113.58140 * 270.13184 * 25 24 23 43 43 H 1.08998 * 113.65170 * 139.34675 * 25 24 23 44 44 H 1.08999 * 113.66373 * 13.65529 * 26 23 9 45 45 H 1.09007 * 113.66161 * 144.61414 * 26 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0591 0.0000 4 6 3.5552 0.6889 -0.0027 5 6 4.7372 1.6239 -0.0067 6 6 5.1320 1.9282 -1.4288 7 8 4.5142 1.4350 -2.3485 8 7 6.1711 2.7495 -1.6786 9 6 6.5547 3.0458 -3.0612 10 1 5.7367 2.9071 -3.7682 11 6 7.8684 2.3712 -3.4960 12 6 8.5972 3.6280 -2.9867 13 1 9.4109 3.9545 -3.6343 14 7 8.9863 3.5535 -1.5763 15 6 10.3035 3.3958 -1.2369 16 1 11.0555 3.3268 -2.0090 17 6 10.6723 3.3257 0.0995 18 7 9.7558 3.4104 1.0404 19 14 12.4690 3.1099 0.5625 20 1 13.2574 4.2511 0.0322 21 1 12.5971 3.0638 2.0412 22 1 12.9810 1.8425 -0.0179 23 6 7.2861 4.3788 -3.2228 24 6 7.0843 5.2457 -4.4661 25 6 6.1354 6.1024 -3.6084 26 6 6.9084 5.5956 -2.3773 27 7 3.6195 -0.6167 0.0045 28 7 2.2965 -1.0880 0.0064 29 1 2.0095 -2.0145 0.0114 30 1 -0.3633 0.0059 1.0276 31 1 -0.3634 0.8870 -0.5190 32 1 -0.3632 -0.8930 -0.5086 33 1 5.5739 1.1539 0.5101 34 1 4.4696 2.5499 0.5022 35 1 6.6646 3.1448 -0.9430 36 1 7.9487 2.2272 -4.5735 37 1 8.1045 1.4706 -2.9292 38 1 8.3108 3.6159 -0.8829 39 1 10.0136 3.3618 1.9742 40 1 7.9841 5.7731 -4.7826 41 1 6.5856 4.7270 -5.2849 42 1 5.0982 5.7687 -3.6398 43 1 6.2401 7.1740 -3.7781 44 1 6.2693 5.3563 -1.5274 45 1 7.7591 6.2204 -2.1053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078621288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:49 Heat of formation + Delta-G solvation = 105.658954 kcal Electronic energy + Delta-G solvation = -27140.405417 eV Core-core repulsion = 23389.508343 eV Total energy + Delta-G solvation = -3750.897075 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.16563 -40.57470 -38.63450 -35.24900 -33.68420 -33.57283 -32.42256 -32.26933 -30.14130 -29.46981 -27.76570 -25.42660 -24.59844 -24.02937 -22.97210 -21.65278 -20.84596 -20.10761 -19.80746 -18.25892 -17.84828 -17.13582 -16.73099 -15.64397 -15.53482 -15.26957 -15.06500 -14.58313 -14.39966 -14.15270 -13.95921 -13.51464 -13.21868 -13.01706 -12.86298 -12.82159 -12.47552 -12.28786 -11.99677 -11.88917 -11.68164 -11.49334 -11.36282 -10.92520 -10.85365 -10.61998 -10.24685 -10.17917 -10.05290 -10.03868 -9.81258 -9.73130 -9.61391 -9.34552 -9.27356 -8.85181 -8.47384 -7.03148 -5.85306 -3.13245 1.55423 2.55942 2.76869 2.96791 3.41341 3.46282 3.46474 3.54118 3.93248 4.49582 4.52185 4.66202 4.80358 4.97077 5.03183 5.08481 5.12166 5.17949 5.21249 5.38262 5.44457 5.47081 5.57218 5.66263 5.67007 5.90523 5.93246 5.99872 6.06356 6.14227 6.17776 6.22521 6.30045 6.36994 6.41056 6.47114 6.65656 6.74490 6.79378 6.98048 6.99605 7.14682 7.66638 7.93128 8.07906 8.34457 8.58863 9.45211 10.00298 10.34233 11.37418 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.011746 B = 0.003742 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.285079 B = 7481.224404 C = 9131.230943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.278 3.722 3 N -0.530 5.530 4 C 0.259 3.741 5 C -0.053 4.053 6 C 0.528 3.472 7 O -0.545 6.545 8 N -0.696 5.696 9 C 0.153 3.847 10 H 0.090 0.910 11 C -0.186 4.186 12 C 0.180 3.820 13 H 0.065 0.935 14 N -0.699 5.699 15 C -0.241 4.241 16 H 0.072 0.928 17 C -0.010 4.010 18 N -0.933 5.933 19 Si 0.909 3.091 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.132 4.132 24 C -0.104 4.104 25 C -0.142 4.142 26 C -0.115 4.115 27 N -0.302 5.302 28 N -0.484 5.484 29 H 0.438 0.562 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.409 0.591 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.379 0.621 39 H 0.257 0.743 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.625 -2.542 -3.724 17.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.001 4.001 3 N -0.259 5.259 4 C -0.025 4.025 5 C -0.096 4.096 6 C 0.312 3.688 7 O -0.422 6.422 8 N -0.349 5.349 9 C 0.047 3.953 10 H 0.108 0.892 11 C -0.229 4.229 12 C 0.068 3.932 13 H 0.083 0.917 14 N -0.339 5.339 15 C -0.372 4.372 16 H 0.090 0.910 17 C -0.206 4.206 18 N -0.581 5.581 19 Si 0.740 3.260 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.135 4.135 24 C -0.142 4.142 25 C -0.179 4.179 26 C -0.152 4.152 27 N -0.131 5.131 28 N -0.203 5.203 29 H 0.283 0.717 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.248 0.752 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.215 0.785 39 H 0.067 0.933 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.264 -2.922 -4.286 17.071 hybrid contribution 0.694 -0.735 0.917 1.365 sum -15.570 -3.657 -3.369 16.344 Atomic orbital electron populations 1.20360 0.83794 1.04922 1.04352 1.24339 0.96530 0.82917 0.96273 1.70291 1.01341 1.29500 1.24801 1.23288 0.92512 0.89685 0.96974 1.19937 0.93915 0.99068 0.96654 1.20047 0.79843 0.78578 0.90287 1.90675 1.53677 1.51519 1.46329 1.45660 1.32193 1.48131 1.08885 1.21396 0.96328 0.94424 0.83105 0.89166 1.24297 0.96953 1.01428 1.00187 1.21039 0.92498 0.91865 0.87814 0.91690 1.42080 1.06093 1.86074 0.99629 1.19228 0.84288 1.42274 0.91434 0.90997 1.24712 0.97653 1.02589 0.95651 1.69605 1.31861 1.57156 0.99513 0.86243 0.84688 0.77950 0.77130 1.21276 1.21701 1.21287 1.23450 0.99111 0.92953 0.97981 1.22478 0.99567 0.96935 0.95243 1.22858 0.98481 0.99021 0.97539 1.22498 0.99749 0.96843 0.96133 1.78036 0.96359 1.12351 1.26314 1.47931 1.04381 1.09876 1.58087 0.71701 0.89112 0.88392 0.90021 0.85884 0.85912 0.75248 0.90554 0.90964 0.78531 0.93325 0.89692 0.91737 0.90780 0.91986 0.91929 0.89473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.51 36.01 0.38 -0.07 16 2 C 0.28 3.25 8.24 -155.69 -1.28 1.97 16 3 N -0.53 -8.20 11.19 -8.16 -0.09 -8.29 16 4 C 0.26 4.28 6.63 -156.85 -1.04 3.24 16 5 C -0.05 -0.82 6.33 -29.03 -0.18 -1.01 16 6 C 0.53 9.48 7.82 -10.98 -0.09 9.39 16 7 O -0.54 -11.44 15.63 5.56 0.09 -11.36 16 8 N -0.70 -12.15 4.69 -53.37 -0.25 -12.40 16 9 C 0.15 2.64 4.12 -67.48 -0.28 2.36 16 10 H 0.09 1.60 7.47 -51.93 -0.39 1.21 16 11 C -0.19 -3.39 7.69 -25.75 -0.20 -3.59 16 12 C 0.18 3.47 4.36 -67.48 -0.29 3.18 16 13 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 14 N -0.70 -16.25 4.98 -52.99 -0.26 -16.52 16 15 C -0.24 -6.37 9.97 -15.06 -0.15 -6.52 16 16 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 17 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 18 N -0.93 -26.30 13.06 55.49 0.72 -25.58 16 19 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 C -0.13 -2.14 0.78 -154.71 -0.12 -2.26 16 24 C -0.10 -1.40 7.84 -26.28 -0.21 -1.61 16 25 C -0.14 -1.87 8.08 -25.75 -0.21 -2.08 16 26 C -0.11 -1.80 7.27 -26.29 -0.19 -1.99 16 27 N -0.30 -4.91 12.80 32.42 0.41 -4.49 16 28 N -0.48 -5.70 7.45 32.62 0.24 -5.46 16 29 H 0.44 3.30 8.96 -182.34 -1.63 1.66 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.12 1.80 8.14 -51.93 -0.42 1.38 16 34 H 0.12 1.61 8.14 -51.93 -0.42 1.18 16 35 H 0.41 7.35 5.95 -40.82 -0.24 7.11 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.38 8.99 5.34 -40.82 -0.22 8.78 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.06 1.00 7.58 -51.93 -0.39 0.60 16 45 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 LS Contribution 373.04 15.07 5.62 5.62 Total: -1.00 -34.29 373.04 -10.41 -44.70 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: -7.92 Total: 16.42 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -3.96 Total: 0.65 kcal Atomic # 7 Polarization: -73.52 SS G_CDS: 0.78 Total: -72.74 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.29 -10.41 -44.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078621288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.357 kcal (2) G-P(sol) polarization free energy of solvation -34.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds