Wall clock time and date at job start Fri Apr 10 2020 18:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30837 * 125.95688 * 2 1 4 4 C 1.33238 * 109.82837 * 180.12194 * 3 2 1 5 5 C 1.50704 * 125.52773 * 179.85249 * 4 3 2 6 6 C 1.50699 * 109.46834 * 269.71560 * 5 4 3 7 7 O 1.21274 * 120.00383 * 0.02562 * 6 5 4 8 8 N 1.34785 * 119.99471 * 179.97438 * 6 5 4 9 9 C 1.46505 * 119.99639 * 180.02562 * 8 6 5 10 10 H 1.09002 * 112.94744 * 23.59753 * 9 8 6 11 11 C 1.53950 * 113.66045 * 252.18907 * 9 8 6 12 12 C 1.53950 * 87.29389 * 270.26357 * 11 9 8 13 13 H 1.09001 * 113.66397 * 220.79813 * 12 11 9 14 14 N 1.46497 * 113.74763 * 89.75264 * 12 11 9 15 15 C 1.36935 * 120.00246 * 107.77229 * 14 12 11 16 16 H 1.08003 * 119.99545 * 0.02562 * 15 14 12 17 17 C 1.38806 * 120.00235 * 179.97438 * 15 14 12 18 18 N 1.31624 * 120.00007 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00082 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47106 * 60.00089 * 19 17 15 21 21 H 1.48498 * 109.47262 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47357 * 300.00186 * 19 17 15 23 23 C 1.52910 * 113.65895 * 154.99936 * 9 8 6 24 24 C 1.52907 * 121.13351 * 215.28589 * 23 9 8 25 25 C 1.53951 * 86.77862 * 100.82528 * 24 23 9 26 26 C 1.52903 * 121.13886 * 323.85243 * 23 9 8 27 27 N 1.30720 * 108.94647 * 359.58854 * 4 3 2 28 28 N 1.34428 * 125.96655 * 179.66504 * 2 1 3 29 29 H 0.96998 * 126.81926 * 0.02562 * 28 2 1 30 30 H 1.08996 * 109.47291 * 270.33027 * 1 2 3 31 31 H 1.08997 * 109.47466 * 30.33196 * 1 2 3 32 32 H 1.09003 * 109.46563 * 150.33659 * 1 2 3 33 33 H 1.08999 * 109.47031 * 149.71659 * 5 4 3 34 34 H 1.08997 * 109.46753 * 29.71592 * 5 4 3 35 35 H 0.96998 * 120.00048 * 359.97438 * 8 6 5 36 36 H 1.09001 * 113.57502 * 155.66010 * 11 9 8 37 37 H 1.08998 * 113.58006 * 24.86306 * 11 9 8 38 38 H 0.97005 * 119.99637 * 287.76929 * 14 12 11 39 39 H 0.96997 * 119.99316 * 180.02562 * 18 17 15 40 40 H 1.08995 * 113.66604 * 215.29469 * 24 23 9 41 41 H 1.08996 * 113.66613 * 346.35541 * 24 23 9 42 42 H 1.09000 * 113.58140 * 270.13184 * 25 24 23 43 43 H 1.08998 * 113.65170 * 139.34675 * 25 24 23 44 44 H 1.08999 * 113.66373 * 13.65529 * 26 23 9 45 45 H 1.09007 * 113.66161 * 144.61414 * 26 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0591 0.0000 4 6 3.5552 0.6889 -0.0027 5 6 4.7372 1.6239 -0.0067 6 6 5.1320 1.9282 -1.4288 7 8 4.5142 1.4350 -2.3485 8 7 6.1711 2.7495 -1.6786 9 6 6.5547 3.0458 -3.0612 10 1 5.7367 2.9071 -3.7682 11 6 7.8684 2.3712 -3.4960 12 6 8.5972 3.6280 -2.9867 13 1 9.4109 3.9545 -3.6343 14 7 8.9863 3.5535 -1.5763 15 6 10.3035 3.3958 -1.2369 16 1 11.0555 3.3268 -2.0090 17 6 10.6723 3.3257 0.0995 18 7 9.7558 3.4104 1.0404 19 14 12.4690 3.1099 0.5625 20 1 13.2574 4.2511 0.0322 21 1 12.5971 3.0638 2.0412 22 1 12.9810 1.8425 -0.0179 23 6 7.2861 4.3788 -3.2228 24 6 7.0843 5.2457 -4.4661 25 6 6.1354 6.1024 -3.6084 26 6 6.9084 5.5956 -2.3773 27 7 3.6195 -0.6167 0.0045 28 7 2.2965 -1.0880 0.0064 29 1 2.0095 -2.0145 0.0114 30 1 -0.3633 0.0059 1.0276 31 1 -0.3634 0.8870 -0.5190 32 1 -0.3632 -0.8930 -0.5086 33 1 5.5739 1.1539 0.5101 34 1 4.4696 2.5499 0.5022 35 1 6.6646 3.1448 -0.9430 36 1 7.9487 2.2272 -4.5735 37 1 8.1045 1.4706 -2.9292 38 1 8.3108 3.6159 -0.8829 39 1 10.0136 3.3618 1.9742 40 1 7.9841 5.7731 -4.7826 41 1 6.5856 4.7270 -5.2849 42 1 5.0982 5.7687 -3.6398 43 1 6.2401 7.1740 -3.7781 44 1 6.2693 5.3563 -1.5274 45 1 7.7591 6.2204 -2.1053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078621288.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:48 Heat of formation + Delta-G solvation = 82.438252 kcal Electronic energy + Delta-G solvation = -27141.412343 eV Core-core repulsion = 23389.508343 eV Total energy + Delta-G solvation = -3751.904000 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.20236 -41.96802 -40.05265 -36.68174 -35.33452 -34.72679 -33.85085 -33.38053 -31.79900 -30.73512 -28.66604 -26.78412 -26.20631 -25.35152 -24.58329 -22.77290 -21.99827 -21.43134 -21.15788 -19.73119 -18.98615 -18.76415 -18.13706 -16.97147 -16.77628 -16.59785 -16.49679 -16.04049 -15.79048 -15.53395 -15.22883 -14.83951 -14.50863 -14.46537 -13.91418 -13.68042 -13.61884 -13.51786 -13.21871 -13.15973 -13.02189 -12.84913 -12.75159 -12.69157 -12.51416 -12.18837 -11.93249 -11.80564 -11.34647 -11.28509 -11.14031 -11.11033 -10.90650 -10.78770 -10.62435 -10.48398 -9.91780 -8.94498 -7.91905 -5.18388 0.54262 1.50581 1.51810 1.53577 1.57484 1.60735 1.72847 2.24821 2.58707 2.97624 3.40144 3.43524 3.51163 3.63082 3.76864 3.82691 3.92409 3.96940 4.06643 4.23985 4.32634 4.35614 4.38394 4.58917 4.68001 4.71289 4.73475 4.81265 4.87849 4.98882 5.02498 5.04640 5.13168 5.15089 5.21902 5.23025 5.24148 5.29423 5.54261 5.57569 5.65731 5.69408 6.20905 6.31400 6.49156 7.04206 7.14749 7.38595 8.12053 8.36619 9.30607 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.011746 B = 0.003742 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.285079 B = 7481.224404 C = 9131.230943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.286 3.714 3 N -0.565 5.565 4 C 0.241 3.759 5 C -0.050 4.050 6 C 0.528 3.472 7 O -0.576 6.576 8 N -0.694 5.694 9 C 0.153 3.847 10 H 0.091 0.909 11 C -0.180 4.180 12 C 0.166 3.834 13 H 0.065 0.935 14 N -0.708 5.708 15 C -0.243 4.243 16 H 0.073 0.927 17 C -0.065 4.065 18 N -0.960 5.960 19 Si 0.967 3.033 20 H -0.280 1.280 21 H -0.297 1.297 22 H -0.285 1.285 23 C -0.122 4.122 24 C -0.095 4.095 25 C -0.127 4.127 26 C -0.121 4.121 27 N -0.340 5.340 28 N -0.474 5.474 29 H 0.455 0.545 30 H 0.114 0.886 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.125 0.875 34 H 0.142 0.858 35 H 0.407 0.593 36 H 0.101 0.899 37 H 0.041 0.959 38 H 0.375 0.625 39 H 0.252 0.748 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.054 0.946 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.994 -2.250 -4.781 18.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.008 3.992 3 N -0.296 5.296 4 C -0.042 4.042 5 C -0.092 4.092 6 C 0.314 3.686 7 O -0.456 6.456 8 N -0.345 5.345 9 C 0.048 3.952 10 H 0.109 0.891 11 C -0.222 4.222 12 C 0.056 3.944 13 H 0.083 0.917 14 N -0.348 5.348 15 C -0.375 4.375 16 H 0.091 0.909 17 C -0.258 4.258 18 N -0.610 5.610 19 Si 0.796 3.204 20 H -0.206 1.206 21 H -0.223 1.223 22 H -0.211 1.211 23 C -0.125 4.125 24 C -0.133 4.133 25 C -0.164 4.164 26 C -0.159 4.159 27 N -0.170 5.170 28 N -0.194 5.194 29 H 0.304 0.696 30 H 0.132 0.868 31 H 0.117 0.883 32 H 0.131 0.869 33 H 0.143 0.857 34 H 0.160 0.840 35 H 0.244 0.756 36 H 0.119 0.881 37 H 0.060 0.940 38 H 0.209 0.791 39 H 0.060 0.940 40 H 0.114 0.886 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.073 0.927 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.645 -2.647 -5.385 18.638 hybrid contribution 1.051 -0.884 1.193 1.819 sum -16.594 -3.531 -4.192 17.476 Atomic orbital electron populations 1.20658 0.79630 1.06493 1.06286 1.25347 0.98427 0.81871 0.93553 1.70276 1.01249 1.31410 1.26634 1.23399 0.93218 0.89923 0.97652 1.19940 0.94149 1.00076 0.95066 1.20430 0.79316 0.77815 0.90989 1.90642 1.54748 1.52747 1.47501 1.45699 1.31936 1.47852 1.09006 1.21416 0.95840 0.95023 0.82966 0.89112 1.24234 0.97260 0.99428 1.01241 1.21248 0.93987 0.93383 0.85807 0.91739 1.42159 1.05048 1.86248 1.01297 1.19551 0.85704 1.40678 0.91527 0.90888 1.25384 1.00963 1.03619 0.95856 1.69733 1.33180 1.58787 0.99305 0.85322 0.80902 0.77859 0.76267 1.20613 1.22286 1.21148 1.23372 0.96103 0.92669 1.00308 1.22526 1.00234 0.96055 0.94479 1.22786 0.98243 1.00192 0.95222 1.22500 0.99705 0.96631 0.97042 1.77902 0.99066 1.12545 1.27513 1.47840 1.03064 1.11043 1.57495 0.69604 0.86766 0.88297 0.86914 0.85701 0.83984 0.75560 0.88078 0.93960 0.79071 0.93952 0.88636 0.90072 0.90325 0.90063 0.92682 0.90855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.51 71.24 0.75 0.09 16 2 C 0.29 6.31 8.24 138.23 1.14 7.44 16 3 N -0.57 -17.33 11.19 -179.72 -2.01 -19.34 16 4 C 0.24 8.10 6.63 138.63 0.92 9.02 16 5 C -0.05 -1.60 6.33 29.10 0.18 -1.41 16 6 C 0.53 19.39 7.82 87.66 0.69 20.08 16 7 O -0.58 -24.62 15.63 -3.01 -0.05 -24.66 16 8 N -0.69 -24.66 4.69 -441.14 -2.07 -26.73 16 9 C 0.15 5.23 4.12 45.28 0.19 5.41 16 10 H 0.09 3.14 7.47 -2.39 -0.02 3.12 16 11 C -0.18 -6.50 7.69 31.23 0.24 -6.26 16 12 C 0.17 6.36 4.36 45.28 0.20 6.56 16 13 H 0.06 2.46 8.10 -2.39 -0.02 2.44 16 14 N -0.71 -33.38 4.98 -321.56 -1.60 -34.98 16 15 C -0.24 -12.92 9.97 84.03 0.84 -12.08 16 16 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 17 C -0.07 -3.58 5.50 84.86 0.47 -3.11 16 18 N -0.96 -55.12 13.06 21.65 0.28 -54.84 16 19 Si 0.97 45.07 29.55 68.60 2.03 47.10 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 22 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 23 C -0.12 -3.81 0.78 -52.31 -0.04 -3.86 16 24 C -0.09 -2.30 7.84 30.88 0.24 -2.06 16 25 C -0.13 -3.03 8.08 31.23 0.25 -2.77 16 26 C -0.12 -3.69 7.27 30.88 0.22 -3.47 16 27 N -0.34 -11.19 12.80 -51.33 -0.66 -11.85 16 28 N -0.47 -10.73 7.45 -50.70 -0.38 -11.11 16 29 H 0.46 6.21 8.96 -213.10 -1.91 4.30 16 30 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.12 3.83 8.14 -2.39 -0.02 3.81 16 34 H 0.14 3.81 8.14 -2.39 -0.02 3.79 16 35 H 0.41 15.06 5.95 -92.71 -0.55 14.51 16 36 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 37 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.37 18.21 5.34 -92.70 -0.50 17.71 16 39 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 40 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.05 1.74 7.58 -2.39 -0.02 1.73 16 45 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 Total: -1.00 -75.22 373.04 -0.09 -75.31 By element: Atomic # 1 Polarization: 49.42 SS G_CDS: -1.92 Total: 47.50 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 6.28 Total: 13.59 kcal Atomic # 7 Polarization: -152.40 SS G_CDS: -6.43 Total: -158.83 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.05 Total: -24.66 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -75.22 -0.09 -75.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078621288.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.747 kcal (2) G-P(sol) polarization free energy of solvation -75.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds