Wall clock time and date at job start Fri Apr 10 2020 18:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99670 * 2 1 4 4 H 1.09005 * 110.91673 * 26.09836 * 3 2 1 5 5 C 1.54910 * 111.00430 * 262.19404 * 3 2 1 6 6 N 1.47422 * 104.82973 * 204.91489 * 5 3 2 7 7 C 1.36942 * 125.64852 * 204.09121 * 6 5 3 8 8 H 1.07997 * 120.00062 * 180.02562 * 7 6 5 9 9 C 1.38818 * 119.99631 * 0.04967 * 7 6 5 10 10 N 1.31615 * 120.00302 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99744 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46925 * 89.99379 * 11 9 7 13 13 H 1.48496 * 109.47138 * 209.99752 * 11 9 7 14 14 H 1.48497 * 109.47016 * 329.99968 * 11 9 7 15 15 C 1.47023 * 108.70513 * 24.13274 * 6 5 3 16 16 C 1.54322 * 107.26988 * 358.93645 * 15 6 5 17 17 H 1.09001 * 110.72062 * 96.34670 * 16 15 6 18 18 N 1.46494 * 110.71881 * 219.44420 * 16 15 6 19 19 C 1.34769 * 120.00196 * 273.54703 * 18 16 15 20 20 O 1.21628 * 120.00001 * 359.97438 * 19 18 16 21 21 C 1.47266 * 120.00238 * 180.02562 * 19 18 16 22 22 C 1.36773 * 126.94152 * 0.02947 * 21 19 18 23 23 N 1.34657 * 108.39660 * 180.24127 * 22 21 19 24 24 H 0.97001 * 124.85414 * 179.69082 * 23 22 21 25 25 C 1.36447 * 110.29676 * 359.55949 * 23 22 21 26 26 C 1.34486 * 108.85992 * 0.44135 * 25 23 22 27 27 C 1.50698 * 126.83791 * 179.74480 * 26 25 23 28 28 C 1.53006 * 117.49627 * 8.61908 * 27 26 25 29 29 C 1.53004 * 117.49459 * 299.99962 * 27 26 25 30 30 H 1.09005 * 109.47181 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47523 * 299.99964 * 1 2 3 32 32 H 1.09004 * 109.47331 * 59.99947 * 1 2 3 33 33 H 1.09008 * 110.36233 * 86.08226 * 5 3 2 34 34 H 1.08998 * 110.36636 * 323.75913 * 5 3 2 35 35 H 0.97001 * 120.00097 * 180.02562 * 10 9 7 36 36 H 1.08996 * 109.87990 * 239.52148 * 15 6 5 37 37 H 1.08995 * 109.88328 * 118.35701 * 15 6 5 38 38 H 0.97005 * 120.00088 * 93.54733 * 18 16 15 39 39 H 1.08002 * 125.79812 * 359.96973 * 22 21 19 40 40 H 1.08004 * 125.57012 * 180.20509 * 25 23 22 41 41 H 1.08994 * 115.55295 * 154.32549 * 27 26 25 42 42 H 1.09000 * 117.49783 * 0.02562 * 28 27 26 43 43 H 1.08997 * 117.49562 * 145.02567 * 28 27 26 44 44 H 1.09005 * 117.49689 * 214.98012 * 29 27 26 45 45 H 1.08999 * 117.50055 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3330 2.0329 0.4479 5 6 2.4154 1.7329 -1.4328 6 7 3.4907 2.7230 -1.2412 7 6 3.8429 3.7013 -2.1324 8 1 4.6490 4.3806 -1.8980 9 6 3.1632 3.8201 -3.3370 10 7 2.1808 2.9922 -3.6228 11 14 3.6431 5.1550 -4.5524 12 1 4.6829 4.6334 -5.4755 13 1 2.4488 5.5660 -5.3334 14 1 4.1793 6.3268 -3.8145 15 6 4.1231 2.4856 0.0646 16 6 3.3823 1.3034 0.7243 17 1 3.9135 0.3683 0.5471 18 7 3.2107 1.5358 2.1605 19 6 4.1854 1.1824 3.0215 20 8 5.2073 0.6701 2.6062 21 6 4.0127 1.4155 4.4653 22 6 2.9291 1.9760 5.0836 23 7 3.1683 2.0143 6.4082 24 1 2.5569 2.3702 7.0719 25 6 4.3924 1.4782 6.6838 26 6 4.9678 1.0928 5.5309 27 6 6.3237 0.4561 5.3664 28 6 7.0624 0.0293 6.6365 29 6 7.5399 1.2501 5.8474 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.5684 2.1874 -1.9469 34 1 2.7852 0.8750 -1.9942 35 1 1.7062 3.0750 -4.4647 36 1 4.0313 3.3749 0.6881 37 1 5.1746 2.2338 -0.0730 38 1 2.3955 1.9441 2.4918 39 1 2.0354 2.3318 4.5924 40 1 4.8297 1.3829 7.6667 41 1 6.4469 -0.1651 4.4794 42 1 6.5675 0.2087 7.5910 43 1 7.6718 -0.8730 6.5851 44 1 8.4634 1.1510 5.2769 45 1 7.3593 2.2331 6.2824 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082285784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:52 Heat of formation + Delta-G solvation = 26.889790 kcal Electronic energy + Delta-G solvation = -26927.213571 eV Core-core repulsion = 23140.608058 eV Total energy + Delta-G solvation = -3786.605513 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.35200 -39.22552 -37.79345 -37.03386 -35.82726 -33.88437 -31.86267 -30.86282 -29.34987 -28.55429 -26.93417 -26.04709 -24.38093 -23.28142 -22.76486 -22.35773 -20.59116 -20.24106 -19.40813 -18.96553 -18.51671 -17.04709 -16.44380 -15.98960 -15.43142 -15.31867 -14.78843 -14.72944 -14.36940 -14.29237 -14.23496 -14.02782 -13.78411 -13.38095 -13.07278 -12.69619 -12.39145 -12.15657 -11.79912 -11.67995 -11.57675 -11.36742 -11.23045 -10.98794 -10.82826 -10.80769 -10.69681 -10.35602 -10.15966 -9.86096 -9.77779 -9.54985 -8.98412 -8.72385 -8.66670 -8.46088 -8.33793 -6.85344 -5.66105 -3.08630 1.75205 2.21775 3.02136 3.41130 3.46004 3.47488 3.54696 3.72942 4.04906 4.16989 4.52582 4.56054 4.83482 4.87985 4.97341 5.07499 5.13565 5.26327 5.45114 5.50386 5.52623 5.56235 5.64856 5.65700 5.73367 5.75828 5.83594 5.90239 5.96432 5.97266 6.07252 6.16699 6.28848 6.34151 6.60917 6.64475 6.76478 6.79822 7.01921 7.25379 7.31225 7.60132 7.76288 7.82446 7.92960 8.30729 8.67363 9.19965 9.80365 10.43479 11.37704 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015749 B = 0.003171 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.419049 B = 8828.562693 C = 9747.037400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.380 6.380 3 C 0.055 3.945 4 H 0.066 0.934 5 C 0.142 3.858 6 N -0.601 5.601 7 C -0.220 4.220 8 H 0.080 0.920 9 C -0.011 4.011 10 N -0.924 5.924 11 Si 0.917 3.083 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.281 1.281 15 C 0.131 3.869 16 C 0.139 3.861 17 H 0.101 0.899 18 N -0.716 5.716 19 C 0.587 3.413 20 O -0.539 6.539 21 C -0.212 4.212 22 C 0.044 3.956 23 N -0.550 5.550 24 H 0.417 0.583 25 C -0.026 4.026 26 C -0.075 4.075 27 C -0.074 4.074 28 C -0.183 4.183 29 C -0.171 4.171 30 H 0.078 0.922 31 H 0.032 0.968 32 H 0.045 0.955 33 H 0.112 0.888 34 H 0.026 0.974 35 H 0.253 0.747 36 H 0.029 0.971 37 H 0.034 0.966 38 H 0.392 0.608 39 H 0.172 0.828 40 H 0.166 0.834 41 H 0.124 0.876 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.998 -3.312 22.585 22.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.298 6.298 3 C -0.004 4.004 4 H 0.084 0.916 5 C 0.016 3.984 6 N -0.329 5.329 7 C -0.349 4.349 8 H 0.098 0.902 9 C -0.207 4.207 10 N -0.572 5.572 11 Si 0.747 3.253 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.207 1.207 15 C 0.004 3.996 16 C 0.034 3.966 17 H 0.119 0.881 18 N -0.366 5.366 19 C 0.375 3.625 20 O -0.417 6.417 21 C -0.223 4.223 22 C -0.092 4.092 23 N -0.145 5.145 24 H 0.253 0.747 25 C -0.153 4.153 26 C -0.082 4.082 27 C -0.093 4.093 28 C -0.220 4.220 29 C -0.208 4.208 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.129 0.871 34 H 0.044 0.956 35 H 0.063 0.937 36 H 0.047 0.953 37 H 0.052 0.948 38 H 0.225 0.775 39 H 0.189 0.811 40 H 0.183 0.817 41 H 0.142 0.858 42 H 0.108 0.892 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.271 -3.730 22.180 22.527 hybrid contribution -0.725 1.284 -0.166 1.484 sum -1.995 -2.446 22.014 22.239 Atomic orbital electron populations 1.22697 0.81769 1.01884 0.99805 1.87863 1.19060 1.27800 1.95068 1.24035 0.92676 0.83625 1.00108 0.91624 1.22283 0.94611 0.92026 0.89459 1.44319 1.37341 1.35406 1.15823 1.19111 1.13732 1.06043 0.95969 0.90215 1.24797 0.98587 0.99405 0.97876 1.69756 1.24671 1.38762 1.24041 0.86037 0.77287 0.80954 0.81020 1.21540 1.21690 1.20674 1.21618 0.95929 0.94139 0.87958 1.22109 0.96497 1.00026 0.77947 0.88142 1.45838 1.19980 1.63749 1.07067 1.17360 0.83077 0.77678 0.84418 1.90746 1.28066 1.43852 1.79013 1.20409 0.96608 1.12234 0.93020 1.21928 1.00095 1.03657 0.83546 1.41413 1.16446 1.49019 1.07572 0.74708 1.21425 0.87590 1.06971 0.99354 1.19643 0.94937 1.02900 0.90717 1.20405 0.88124 1.02190 0.98595 1.22988 1.04309 0.99145 0.95586 1.22970 0.98380 0.95844 1.03650 0.90357 0.94918 0.93583 0.87069 0.95570 0.93665 0.95274 0.94799 0.77459 0.81096 0.81688 0.85790 0.89228 0.88730 0.88656 0.89081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.85 101.05 1.10 1.60 16 2 O -0.38 -7.05 10.51 -35.23 -0.37 -7.42 16 3 C 0.05 1.07 3.15 -24.58 -0.08 0.99 16 4 H 0.07 1.17 7.69 -51.93 -0.40 0.77 16 5 C 0.14 3.50 5.62 -2.53 -0.01 3.49 16 6 N -0.60 -15.72 3.39 -170.07 -0.58 -16.30 16 7 C -0.22 -6.21 10.27 -15.05 -0.15 -6.36 16 8 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 9 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 10 N -0.92 -26.77 10.09 55.49 0.56 -26.21 16 11 Si 0.92 22.13 29.55 -169.99 -5.02 17.10 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 C 0.13 2.94 6.99 -3.06 -0.02 2.92 16 16 C 0.14 2.72 2.97 -66.10 -0.20 2.53 16 17 H 0.10 2.18 7.69 -51.93 -0.40 1.78 16 18 N -0.72 -11.41 5.12 -53.16 -0.27 -11.68 16 19 C 0.59 9.99 7.81 -12.59 -0.10 9.89 16 20 O -0.54 -11.15 15.14 5.25 0.08 -11.07 16 21 C -0.21 -2.89 6.29 -103.35 -0.65 -3.54 16 22 C 0.04 0.41 11.40 -16.84 -0.19 0.22 16 23 N -0.55 -4.01 5.90 -12.84 -0.08 -4.08 16 24 H 0.42 1.47 8.96 -40.82 -0.37 1.10 16 25 C -0.03 -0.23 11.26 -16.82 -0.19 -0.42 16 26 C -0.08 -0.95 6.02 -102.54 -0.62 -1.57 16 27 C -0.07 -0.95 5.78 -91.77 -0.53 -1.48 16 28 C -0.18 -1.72 10.02 -26.73 -0.27 -1.99 16 29 C -0.17 -1.84 10.23 -26.73 -0.27 -2.11 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.11 3.00 5.87 -51.92 -0.31 2.70 16 34 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.03 0.64 8.03 -51.93 -0.42 0.23 16 37 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.39 4.98 7.46 -40.82 -0.30 4.67 16 39 H 0.17 1.10 7.45 -52.49 -0.39 0.71 16 40 H 0.17 1.03 7.16 -52.48 -0.38 0.66 16 41 H 0.12 1.89 7.03 -51.93 -0.37 1.53 16 42 H 0.09 0.69 7.00 -51.93 -0.36 0.32 16 43 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 370.80 15.07 5.59 5.59 Total: -1.00 -34.88 370.80 -8.99 -43.87 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -6.61 Total: 6.47 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -2.28 Total: 3.75 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: -0.37 Total: -58.28 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.29 Total: -18.50 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.88 -8.99 -43.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082285784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.757 kcal (2) G-P(sol) polarization free energy of solvation -34.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds