Wall clock time and date at job start Fri Apr 10 2020 18:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.47314 * 2 1 4 4 C 1.35535 * 125.67807 * 261.15757 * 3 2 1 5 5 C 1.35454 * 108.87109 * 180.30031 * 4 3 2 6 6 C 1.39836 * 107.86388 * 359.73183 * 5 4 3 7 7 C 1.37648 * 125.67831 * 81.00240 * 3 2 1 8 8 C 1.46679 * 126.23255 * 359.96093 * 7 3 2 9 9 O 1.21692 * 120.00136 * 351.79147 * 8 7 3 10 10 N 1.34777 * 119.99940 * 171.78714 * 8 7 3 11 11 C 1.44964 * 117.32958 * 354.70255 * 10 8 7 12 12 C 1.51969 * 111.87092 * 203.73322 * 11 10 8 13 13 O 1.41321 * 111.54149 * 319.28271 * 12 11 10 14 14 C 1.40778 * 118.42814 * 56.90766 * 13 12 11 15 15 H 1.09003 * 109.34099 * 188.41359 * 14 13 12 16 16 C 1.54199 * 110.24010 * 67.80920 * 14 13 12 17 17 N 1.46885 * 106.39637 * 210.34430 * 16 14 13 18 18 C 1.36930 * 125.36677 * 197.82557 * 17 16 14 19 19 H 1.08004 * 120.00198 * 169.23330 * 18 17 16 20 20 C 1.38820 * 120.00139 * 349.23395 * 18 17 16 21 21 N 1.31621 * 119.99569 * 351.12190 * 20 18 17 22 22 Si 1.86797 * 120.00007 * 171.39451 * 20 18 17 23 23 H 1.48499 * 109.46957 * 274.73922 * 22 20 18 24 24 H 1.48496 * 109.47013 * 34.73874 * 22 20 18 25 25 H 1.48499 * 109.46835 * 154.74096 * 22 20 18 26 26 C 1.46787 * 109.26459 * 18.09336 * 17 16 14 27 27 C 1.44540 * 117.32671 * 174.67537 * 10 8 7 28 28 H 1.08994 * 108.92952 * 286.38689 * 27 10 8 29 29 H 1.09005 * 109.47139 * 185.41960 * 1 2 3 30 30 H 1.09002 * 109.46568 * 305.41735 * 1 2 3 31 31 H 1.08996 * 109.47324 * 65.41496 * 1 2 3 32 32 H 1.09000 * 109.46831 * 240.00061 * 2 1 3 33 33 H 1.08999 * 109.46904 * 120.00326 * 2 1 3 34 34 H 1.07998 * 125.56398 * 0.02562 * 4 3 2 35 35 H 1.07997 * 126.06772 * 179.76599 * 5 4 3 36 36 H 1.07997 * 126.45403 * 180.02562 * 6 5 4 37 37 H 1.09005 * 108.99782 * 324.34449 * 11 10 8 38 38 H 1.08998 * 109.00228 * 83.11215 * 11 10 8 39 39 H 1.09000 * 109.06936 * 79.81620 * 12 11 10 40 40 H 1.09006 * 109.06729 * 198.75793 * 12 11 10 41 41 H 1.09000 * 110.07051 * 91.11806 * 16 14 13 42 42 H 1.08994 * 110.11665 * 329.59976 * 16 14 13 43 43 H 0.96997 * 119.99506 * 179.97438 * 21 20 18 44 44 H 1.08999 * 109.82652 * 118.11460 * 26 17 16 45 45 H 1.09005 * 109.82456 * 239.07431 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4415 2.0700 -1.0879 5 6 2.8233 3.3104 -0.6998 6 6 2.6275 3.4069 0.6814 7 6 2.1212 2.1963 1.1044 8 6 1.7630 1.8399 2.4814 9 8 1.1912 0.7901 2.7091 10 7 2.0673 2.6751 3.4945 11 6 2.8513 3.8517 3.1745 12 6 3.6020 4.3786 4.3862 13 8 2.8066 4.3249 5.5531 14 6 2.2732 3.0821 5.9440 15 1 1.5710 3.2325 6.7640 16 6 3.4030 2.1352 6.3962 17 7 2.9542 0.7730 6.0789 18 6 3.4754 -0.3769 6.6091 19 1 2.9726 -1.3199 6.4529 20 6 4.6500 -0.3306 7.3476 21 7 5.3554 0.7797 7.3930 22 14 5.2333 -1.8462 8.2705 23 1 4.5738 -1.9006 9.5999 24 1 4.8841 -3.0632 7.4945 25 1 6.7058 -1.7797 8.4508 26 6 1.8633 0.8385 5.0989 27 6 1.5848 2.3245 4.8111 28 1 0.5113 2.5078 4.8546 29 1 -0.3634 -1.0231 0.0971 30 1 -0.3632 0.5956 0.8375 31 1 -0.3634 0.4275 -0.9345 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.4736 1.6903 -2.0984 35 1 3.2097 4.0870 -1.3431 36 1 2.8337 4.2678 1.3001 37 1 3.5695 3.5983 2.3946 38 1 2.1861 4.6310 2.8026 39 1 4.4986 3.7778 4.5386 40 1 3.8945 5.4124 4.2021 41 1 3.5672 2.2344 7.4692 42 1 4.3214 2.3620 5.8548 43 1 6.1759 0.8122 7.9092 44 1 2.1601 0.3312 4.1809 45 1 0.9690 0.3695 5.5094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083276448.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:57 Heat of formation + Delta-G solvation = 49.030738 kcal Electronic energy + Delta-G solvation = -28728.749083 eV Core-core repulsion = 24943.103673 eV Total energy + Delta-G solvation = -3785.645410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.68943 -40.26638 -38.08254 -35.93331 -35.26368 -33.83563 -32.44993 -30.20168 -29.47664 -29.31490 -27.93240 -27.07990 -24.71189 -23.82733 -23.23635 -22.40238 -21.01774 -20.17311 -19.29477 -18.77631 -17.35280 -16.97553 -16.70329 -16.04841 -15.67454 -15.17550 -14.84565 -14.80010 -14.49967 -14.41675 -14.05985 -13.95544 -13.63196 -13.34644 -12.87733 -12.58254 -12.44156 -12.35153 -12.19358 -12.07439 -11.99901 -11.90249 -11.27126 -11.05279 -10.89493 -10.85803 -10.64836 -10.53589 -10.35987 -10.09986 -9.70769 -9.37102 -8.95008 -8.74578 -8.56992 -8.24127 -8.14270 -6.72873 -5.71819 -3.04864 1.56198 2.60052 2.74795 3.27665 3.41854 3.46804 3.48571 3.50077 4.13086 4.50426 4.57982 4.64510 4.88574 4.93779 4.99990 5.15849 5.18157 5.22518 5.31386 5.35825 5.40797 5.45182 5.57982 5.62746 5.71801 5.73642 5.75160 5.85304 5.98546 6.01839 6.07048 6.13199 6.17062 6.24940 6.58612 6.73800 6.87897 7.00649 7.19215 7.22894 7.40799 7.49152 7.52143 7.75960 7.88534 8.26972 8.40054 9.22600 9.84044 10.49431 11.40892 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014509 B = 0.004581 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.373599 B = 6110.743862 C = 7089.482845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.406 5.406 4 C 0.009 3.991 5 C -0.211 4.211 6 C -0.169 4.169 7 C -0.040 4.040 8 C 0.576 3.424 9 O -0.532 6.532 10 N -0.573 5.573 11 C 0.060 3.940 12 C 0.054 3.946 13 O -0.371 6.371 14 C 0.069 3.931 15 H 0.113 0.887 16 C 0.153 3.847 17 N -0.601 5.601 18 C -0.226 4.226 19 H 0.077 0.923 20 C -0.007 4.007 21 N -0.920 5.920 22 Si 0.911 3.089 23 H -0.288 1.288 24 H -0.282 1.282 25 H -0.291 1.291 26 C 0.122 3.878 27 C 0.116 3.884 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.164 0.836 35 H 0.140 0.860 36 H 0.165 0.835 37 H 0.105 0.895 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.104 0.896 41 H 0.063 0.937 42 H 0.040 0.960 43 H 0.253 0.747 44 H 0.066 0.934 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.600 7.226 -16.202 18.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.080 5.080 4 C -0.126 4.126 5 C -0.235 4.235 6 C -0.194 4.194 7 C -0.154 4.154 8 C 0.366 3.634 9 O -0.411 6.411 10 N -0.306 5.306 11 C -0.063 4.063 12 C -0.023 4.023 13 O -0.288 6.288 14 C 0.010 3.990 15 H 0.130 0.870 16 C 0.027 3.973 17 N -0.330 5.330 18 C -0.354 4.354 19 H 0.094 0.906 20 C -0.204 4.204 21 N -0.567 5.567 22 Si 0.742 3.258 23 H -0.215 1.215 24 H -0.207 1.207 25 H -0.217 1.217 26 C -0.003 4.003 27 C 0.012 3.988 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.182 0.818 35 H 0.158 0.842 36 H 0.182 0.818 37 H 0.122 0.878 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.122 0.878 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.083 0.917 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -6.889 6.416 -15.777 18.373 hybrid contribution 0.523 -0.971 0.189 1.119 sum -6.366 5.444 -15.588 17.696 Atomic orbital electron populations 1.22054 0.93902 1.03272 1.02576 1.21979 0.96159 0.79494 1.04535 1.44081 1.46343 1.11518 1.06017 1.21980 1.05226 0.93632 0.91797 1.20855 1.09802 0.97309 0.95542 1.22322 1.03897 0.97362 0.95828 1.20132 1.13938 0.92895 0.88413 1.17074 0.79599 0.83457 0.83253 1.90760 1.42851 1.23197 1.84283 1.46296 1.53320 1.23702 1.07282 1.22603 0.95952 0.87855 0.99907 1.22349 0.93940 1.02055 0.84003 1.86837 1.68102 1.30919 1.42894 1.22983 0.97257 0.84321 0.94456 0.86958 1.21676 0.92405 0.82751 1.00463 1.44248 1.39036 1.02168 1.47500 1.19006 1.03853 0.86050 1.26491 0.90560 1.24831 0.96415 0.97485 1.01637 1.69953 1.16152 1.25952 1.44631 0.86146 0.77593 0.82112 0.79984 1.21495 1.20736 1.21745 1.21865 0.92332 0.91606 0.94529 1.21618 0.97500 0.97993 0.81720 0.91132 0.90837 0.90915 0.92821 0.89540 0.88028 0.81839 0.84230 0.81824 0.87755 0.91153 0.92027 0.87792 0.91857 0.94233 0.93731 0.91672 0.95052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 10.04 37.16 0.37 -1.38 16 2 C 0.10 1.15 6.06 -4.04 -0.02 1.13 16 3 N -0.41 -5.30 2.76 -112.87 -0.31 -5.62 16 4 C 0.01 0.09 11.36 -16.91 -0.19 -0.10 16 5 C -0.21 -2.29 10.81 -39.98 -0.43 -2.73 16 6 C -0.17 -2.10 8.54 -39.12 -0.33 -2.43 16 7 C -0.04 -0.60 6.65 -81.98 -0.55 -1.14 16 8 C 0.58 10.18 7.04 -12.85 -0.09 10.09 16 9 O -0.53 -10.46 10.80 5.20 0.06 -10.41 16 10 N -0.57 -9.90 3.09 -170.54 -0.53 -10.43 16 11 C 0.06 0.82 4.50 -5.39 -0.02 0.80 16 12 C 0.05 0.79 6.74 36.63 0.25 1.04 16 13 O -0.37 -6.59 10.25 -34.35 -0.35 -6.94 16 14 C 0.07 1.35 3.91 -26.27 -0.10 1.25 16 15 H 0.11 2.05 8.14 -51.93 -0.42 1.63 16 16 C 0.15 3.76 4.99 -3.21 -0.02 3.74 16 17 N -0.60 -15.95 3.39 -171.40 -0.58 -16.53 16 18 C -0.23 -6.50 10.22 -15.06 -0.15 -6.65 16 19 H 0.08 2.16 7.84 -52.48 -0.41 1.74 16 20 C -0.01 -0.21 5.41 -17.43 -0.09 -0.30 16 21 N -0.92 -27.37 10.64 55.49 0.59 -26.78 16 22 Si 0.91 22.54 29.56 -169.99 -5.03 17.51 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 C 0.12 2.80 6.03 -3.41 -0.02 2.78 16 27 C 0.12 2.22 3.36 -68.67 -0.23 1.99 16 28 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 1.00 7.10 -51.93 -0.37 0.63 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.74 8.11 -51.93 -0.42 0.32 16 33 H 0.10 1.43 7.07 -51.93 -0.37 1.07 16 34 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.16 1.72 4.28 -52.49 -0.22 1.49 16 37 H 0.10 1.34 5.00 -51.93 -0.26 1.08 16 38 H 0.07 0.81 7.13 -51.93 -0.37 0.44 16 39 H 0.06 1.05 6.74 -51.93 -0.35 0.70 16 40 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.06 1.72 7.31 -51.93 -0.38 1.34 16 42 H 0.04 1.07 6.10 -51.93 -0.32 0.75 16 43 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.07 1.62 5.13 -51.93 -0.27 1.35 16 45 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 342.56 15.07 5.16 5.16 Total: -1.00 -33.70 342.56 -8.88 -42.58 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -6.25 Total: 3.34 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -1.64 Total: 8.10 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: -0.83 Total: -59.35 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.30 Total: -17.35 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.03 Total: 17.51 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.70 -8.88 -42.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083276448.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.616 kcal (2) G-P(sol) polarization free energy of solvation -33.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds