Wall clock time and date at job start Fri Apr 10 2020 18:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.47314 * 2 1 4 4 C 1.35535 * 125.67807 * 261.15757 * 3 2 1 5 5 C 1.35454 * 108.87109 * 180.30031 * 4 3 2 6 6 C 1.39836 * 107.86388 * 359.73183 * 5 4 3 7 7 C 1.37648 * 125.67831 * 81.00240 * 3 2 1 8 8 C 1.46679 * 126.23255 * 359.96093 * 7 3 2 9 9 O 1.21692 * 120.00136 * 351.79147 * 8 7 3 10 10 N 1.34777 * 119.99940 * 171.78714 * 8 7 3 11 11 C 1.44964 * 117.32958 * 354.70255 * 10 8 7 12 12 C 1.51969 * 111.87092 * 203.73322 * 11 10 8 13 13 O 1.41321 * 111.54149 * 319.28271 * 12 11 10 14 14 C 1.40778 * 118.42814 * 56.90766 * 13 12 11 15 15 H 1.09003 * 109.34099 * 188.41359 * 14 13 12 16 16 C 1.54199 * 110.24010 * 67.80920 * 14 13 12 17 17 N 1.46885 * 106.39637 * 210.34430 * 16 14 13 18 18 C 1.36930 * 125.36677 * 197.82557 * 17 16 14 19 19 H 1.08004 * 120.00198 * 169.23330 * 18 17 16 20 20 C 1.38820 * 120.00139 * 349.23395 * 18 17 16 21 21 N 1.31621 * 119.99569 * 351.12190 * 20 18 17 22 22 Si 1.86797 * 120.00007 * 171.39451 * 20 18 17 23 23 H 1.48499 * 109.46957 * 274.73922 * 22 20 18 24 24 H 1.48496 * 109.47013 * 34.73874 * 22 20 18 25 25 H 1.48499 * 109.46835 * 154.74096 * 22 20 18 26 26 C 1.46787 * 109.26459 * 18.09336 * 17 16 14 27 27 C 1.44540 * 117.32671 * 174.67537 * 10 8 7 28 28 H 1.08994 * 108.92952 * 286.38689 * 27 10 8 29 29 H 1.09005 * 109.47139 * 185.41960 * 1 2 3 30 30 H 1.09002 * 109.46568 * 305.41735 * 1 2 3 31 31 H 1.08996 * 109.47324 * 65.41496 * 1 2 3 32 32 H 1.09000 * 109.46831 * 240.00061 * 2 1 3 33 33 H 1.08999 * 109.46904 * 120.00326 * 2 1 3 34 34 H 1.07998 * 125.56398 * 0.02562 * 4 3 2 35 35 H 1.07997 * 126.06772 * 179.76599 * 5 4 3 36 36 H 1.07997 * 126.45403 * 180.02562 * 6 5 4 37 37 H 1.09005 * 108.99782 * 324.34449 * 11 10 8 38 38 H 1.08998 * 109.00228 * 83.11215 * 11 10 8 39 39 H 1.09000 * 109.06936 * 79.81620 * 12 11 10 40 40 H 1.09006 * 109.06729 * 198.75793 * 12 11 10 41 41 H 1.09000 * 110.07051 * 91.11806 * 16 14 13 42 42 H 1.08994 * 110.11665 * 329.59976 * 16 14 13 43 43 H 0.96997 * 119.99506 * 179.97438 * 21 20 18 44 44 H 1.08999 * 109.82652 * 118.11460 * 26 17 16 45 45 H 1.09005 * 109.82456 * 239.07431 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4415 2.0700 -1.0879 5 6 2.8233 3.3104 -0.6998 6 6 2.6275 3.4069 0.6814 7 6 2.1212 2.1963 1.1044 8 6 1.7630 1.8399 2.4814 9 8 1.1912 0.7901 2.7091 10 7 2.0673 2.6751 3.4945 11 6 2.8513 3.8517 3.1745 12 6 3.6020 4.3786 4.3862 13 8 2.8066 4.3249 5.5531 14 6 2.2732 3.0821 5.9440 15 1 1.5710 3.2325 6.7640 16 6 3.4030 2.1352 6.3962 17 7 2.9542 0.7730 6.0789 18 6 3.4754 -0.3769 6.6091 19 1 2.9726 -1.3199 6.4529 20 6 4.6500 -0.3306 7.3476 21 7 5.3554 0.7797 7.3930 22 14 5.2333 -1.8462 8.2705 23 1 4.5738 -1.9006 9.5999 24 1 4.8841 -3.0632 7.4945 25 1 6.7058 -1.7797 8.4508 26 6 1.8633 0.8385 5.0989 27 6 1.5848 2.3245 4.8111 28 1 0.5113 2.5078 4.8546 29 1 -0.3634 -1.0231 0.0971 30 1 -0.3632 0.5956 0.8375 31 1 -0.3634 0.4275 -0.9345 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.4736 1.6903 -2.0984 35 1 3.2097 4.0870 -1.3431 36 1 2.8337 4.2678 1.3001 37 1 3.5695 3.5983 2.3946 38 1 2.1861 4.6310 2.8026 39 1 4.4986 3.7778 4.5386 40 1 3.8945 5.4124 4.2021 41 1 3.5672 2.2344 7.4692 42 1 4.3214 2.3620 5.8548 43 1 6.1759 0.8122 7.9092 44 1 2.1601 0.3312 4.1809 45 1 0.9690 0.3695 5.5094 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083276448.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:56 Heat of formation + Delta-G solvation = 26.455015 kcal Electronic energy + Delta-G solvation = -28729.728040 eV Core-core repulsion = 24943.103673 eV Total energy + Delta-G solvation = -3786.624367 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.77884 -41.55447 -39.45926 -37.69778 -36.53246 -34.88181 -34.34812 -31.91046 -30.60949 -30.26978 -29.57782 -28.68067 -26.60236 -25.04492 -24.34579 -23.70920 -22.52923 -21.42383 -20.67607 -19.97940 -19.03282 -18.36635 -18.25843 -17.36510 -16.96993 -16.77775 -16.24031 -16.17793 -15.87099 -15.72050 -15.44476 -15.15707 -15.00091 -14.51309 -14.42408 -14.06100 -13.98802 -13.71122 -13.44108 -13.32024 -13.10603 -12.98815 -12.85835 -12.82428 -12.48328 -12.32102 -12.15509 -12.12684 -12.04238 -11.93993 -11.56493 -10.88043 -10.73639 -10.43198 -9.73460 -9.52614 -9.13590 -8.87174 -7.93204 -5.29940 0.50342 1.41221 1.44281 1.51499 1.53018 1.88138 2.17174 2.33359 2.44650 2.75980 3.24634 3.31106 3.58377 3.70371 3.77466 3.80126 3.91393 4.07245 4.11183 4.17771 4.19435 4.35690 4.36531 4.39098 4.46096 4.47640 4.53622 4.71140 4.76025 4.84220 4.87201 4.99263 5.04905 5.17070 5.21234 5.30658 5.32944 5.44684 5.57524 5.59524 5.87219 6.04876 6.12883 6.21782 6.38404 6.42228 7.01842 7.10705 7.69136 8.33258 9.17663 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014509 B = 0.004581 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.373599 B = 6110.743862 C = 7089.482845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.098 3.902 3 N -0.416 5.416 4 C 0.022 3.978 5 C -0.218 4.218 6 C -0.157 4.157 7 C -0.087 4.087 8 C 0.567 3.433 9 O -0.567 6.567 10 N -0.582 5.582 11 C 0.060 3.940 12 C 0.048 3.952 13 O -0.370 6.370 14 C 0.087 3.913 15 H 0.128 0.872 16 C 0.164 3.836 17 N -0.620 5.620 18 C -0.250 4.250 19 H 0.073 0.927 20 C -0.058 4.058 21 N -0.945 5.945 22 Si 0.980 3.020 23 H -0.280 1.280 24 H -0.273 1.273 25 H -0.290 1.290 26 C 0.125 3.875 27 C 0.127 3.873 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.122 0.878 33 H 0.065 0.935 34 H 0.202 0.798 35 H 0.170 0.830 36 H 0.183 0.817 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.029 0.971 40 H 0.152 0.848 41 H 0.028 0.972 42 H 0.009 0.991 43 H 0.250 0.750 44 H 0.046 0.954 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.776 8.608 -18.746 21.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 N -0.090 5.090 4 C -0.113 4.113 5 C -0.241 4.241 6 C -0.183 4.183 7 C -0.199 4.199 8 C 0.359 3.641 9 O -0.448 6.448 10 N -0.315 5.315 11 C -0.062 4.062 12 C -0.029 4.029 13 O -0.287 6.287 14 C 0.028 3.972 15 H 0.146 0.854 16 C 0.039 3.961 17 N -0.347 5.347 18 C -0.379 4.379 19 H 0.090 0.910 20 C -0.251 4.251 21 N -0.593 5.593 22 Si 0.808 3.192 23 H -0.207 1.207 24 H -0.198 1.198 25 H -0.216 1.216 26 C -0.001 4.001 27 C 0.022 3.978 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.140 0.860 33 H 0.084 0.916 34 H 0.219 0.781 35 H 0.187 0.813 36 H 0.199 0.801 37 H 0.132 0.868 38 H 0.124 0.876 39 H 0.048 0.952 40 H 0.170 0.830 41 H 0.047 0.953 42 H 0.027 0.973 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -7.074 7.827 -18.337 21.156 hybrid contribution 0.626 -1.393 0.849 1.747 sum -6.448 6.434 -17.488 19.718 Atomic orbital electron populations 1.21966 0.93529 1.03364 1.02033 1.22012 0.96479 0.79338 1.04455 1.44279 1.46669 1.11816 1.06225 1.22735 1.02598 0.93382 0.92580 1.21270 1.09602 0.98185 0.95047 1.22643 1.01917 0.96714 0.97013 1.19954 1.17572 0.94747 0.87631 1.17590 0.79003 0.82932 0.84567 1.90725 1.44504 1.24607 1.84992 1.46411 1.53848 1.24890 1.06319 1.22876 0.96426 0.87373 0.99516 1.22679 0.92391 1.04386 0.83408 1.86847 1.68276 1.29178 1.44412 1.22689 0.95398 0.84033 0.95128 0.85408 1.21434 0.93430 0.83394 0.97869 1.44517 1.39591 1.02383 1.48258 1.19322 1.04431 0.86951 1.27172 0.90955 1.25681 0.96453 1.00619 1.02396 1.70156 1.16243 1.27846 1.45073 0.85083 0.76800 0.78687 0.78673 1.20681 1.19826 1.21605 1.21863 0.90865 0.94605 0.92731 1.21346 0.98476 0.95000 0.82930 0.89385 0.89917 0.94312 0.90820 0.85995 0.91620 0.78085 0.81272 0.80067 0.86755 0.87615 0.95219 0.83023 0.95321 0.97317 0.94092 0.93651 0.95622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 10.04 71.98 0.72 -2.51 16 2 C 0.10 2.22 6.06 86.38 0.52 2.74 16 3 N -0.42 -10.22 2.76 -511.02 -1.41 -11.63 16 4 C 0.02 0.40 11.36 83.48 0.95 1.35 16 5 C -0.22 -3.86 10.81 22.01 0.24 -3.62 16 6 C -0.16 -3.47 8.54 22.57 0.19 -3.27 16 7 C -0.09 -2.51 6.65 40.35 0.27 -2.24 16 8 C 0.57 20.44 7.04 86.45 0.61 21.05 16 9 O -0.57 -23.54 10.80 -4.32 -0.05 -23.59 16 10 N -0.58 -20.06 3.09 -811.69 -2.51 -22.57 16 11 C 0.06 1.53 4.50 86.33 0.39 1.92 16 12 C 0.05 1.34 6.74 71.64 0.48 1.83 16 13 O -0.37 -12.81 10.25 -145.81 -1.49 -14.31 16 14 C 0.09 3.45 3.91 30.90 0.12 3.57 16 15 H 0.13 4.64 8.14 -2.39 -0.02 4.62 16 16 C 0.16 8.50 4.99 86.71 0.43 8.93 16 17 N -0.62 -34.51 3.39 -696.19 -2.36 -36.87 16 18 C -0.25 -15.02 10.22 84.04 0.86 -14.16 16 19 H 0.07 4.27 7.84 -2.91 -0.02 4.25 16 20 C -0.06 -3.42 5.41 84.86 0.46 -2.96 16 21 N -0.95 -58.42 10.64 21.65 0.23 -58.19 16 22 Si 0.98 47.44 29.56 68.60 2.03 49.46 16 23 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 24 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 25 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 26 C 0.12 6.00 6.03 86.63 0.52 6.52 16 27 C 0.13 4.95 3.36 45.56 0.15 5.11 16 28 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 29 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.04 1.09 7.10 -2.39 -0.02 1.08 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.12 1.81 8.11 -2.39 -0.02 1.79 16 33 H 0.07 1.96 7.07 -2.39 -0.02 1.94 16 34 H 0.20 1.89 8.06 -2.91 -0.02 1.87 16 35 H 0.17 1.96 8.06 -2.91 -0.02 1.93 16 36 H 0.18 3.13 4.28 -2.91 -0.01 3.12 16 37 H 0.11 2.72 5.00 -2.38 -0.01 2.71 16 38 H 0.11 2.02 7.13 -2.39 -0.02 2.00 16 39 H 0.03 1.03 6.74 -2.39 -0.02 1.01 16 40 H 0.15 2.81 8.14 -2.38 -0.02 2.79 16 41 H 0.03 1.64 7.31 -2.39 -0.02 1.63 16 42 H 0.01 0.51 6.10 -2.39 -0.01 0.50 16 43 H 0.25 14.91 8.31 -92.71 -0.77 14.13 16 44 H 0.05 2.41 5.13 -2.40 -0.01 2.39 16 45 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -78.60 342.56 2.37 -76.23 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 1.01 Total: 17.20 kcal Atomic # 6 Polarization: 17.32 SS G_CDS: 6.92 Total: 24.24 kcal Atomic # 7 Polarization: -123.21 SS G_CDS: -6.05 Total: -129.25 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -1.54 Total: -37.89 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.46 kcal Total: -78.60 2.37 -76.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083276448.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.690 kcal (2) G-P(sol) polarization free energy of solvation -78.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds