Wall clock time and date at job start Fri Apr 10 2020 18:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42894 * 114.00173 * 2 1 4 4 C 1.50701 * 109.47155 * 180.02562 * 3 2 1 5 5 C 1.38349 * 120.34744 * 269.97619 * 4 3 2 6 6 N 1.31921 * 121.08275 * 179.97438 * 5 4 3 7 7 C 1.31700 * 121.87892 * 0.02562 * 6 5 4 8 8 C 1.39524 * 120.56187 * 0.02562 * 7 6 5 9 9 C 1.47842 * 120.55425 * 180.02562 * 8 7 6 10 10 O 1.21552 * 119.99946 * 149.21774 * 9 8 7 11 11 N 1.34779 * 119.99850 * 329.20943 * 9 8 7 12 12 C 1.46495 * 120.00202 * 4.12012 * 11 9 8 13 13 C 1.46498 * 119.99525 * 184.11764 * 11 9 8 14 14 C 1.53007 * 109.46954 * 86.81052 * 13 11 9 15 15 H 1.09000 * 112.95956 * 296.01803 * 14 13 11 16 16 C 1.53939 * 113.77075 * 67.70182 * 14 13 11 17 17 C 1.53949 * 86.29029 * 137.91078 * 16 14 13 18 18 N 1.47579 * 113.76818 * 164.34664 * 14 13 11 19 19 C 1.36935 * 134.49418 * 41.06960 * 18 14 13 20 20 H 1.07997 * 120.00162 * 348.32767 * 19 18 14 21 21 C 1.38816 * 120.00089 * 168.33238 * 19 18 14 22 22 N 1.31623 * 120.00033 * 166.07958 * 21 19 18 23 23 Si 1.86798 * 119.99790 * 346.07590 * 21 19 18 24 24 H 1.48494 * 109.47483 * 87.06870 * 23 21 19 25 25 H 1.48504 * 109.46878 * 207.06742 * 23 21 19 26 26 H 1.48503 * 109.47130 * 327.06830 * 23 21 19 27 27 C 1.38354 * 120.34896 * 90.00339 * 4 3 2 28 28 H 1.08994 * 109.46963 * 59.99888 * 1 2 3 29 29 H 1.08999 * 109.47310 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47343 * 300.00109 * 1 2 3 31 31 H 1.09001 * 109.47176 * 59.99920 * 3 2 1 32 32 H 1.09004 * 109.47010 * 300.00360 * 3 2 1 33 33 H 1.08009 * 119.46409 * 0.02562 * 5 4 3 34 34 H 1.07995 * 119.71560 * 179.97438 * 7 6 5 35 35 H 1.09005 * 109.47023 * 93.34140 * 12 11 9 36 36 H 1.08998 * 109.47343 * 213.33772 * 12 11 9 37 37 H 1.08997 * 109.47456 * 333.34096 * 12 11 9 38 38 H 1.09003 * 109.47281 * 206.80368 * 13 11 9 39 39 H 1.08996 * 109.47980 * 326.80576 * 13 11 9 40 40 H 1.09003 * 113.74167 * 252.25658 * 16 14 13 41 41 H 1.08997 * 113.74591 * 23.45648 * 16 14 13 42 42 H 1.08995 * 113.76760 * 90.69311 * 17 16 14 43 43 H 1.09002 * 113.76699 * 221.98177 * 17 16 14 44 44 H 0.96999 * 119.99662 * 179.97438 * 22 21 19 45 45 H 1.08004 * 120.85643 * 359.69625 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.2099 1.1314 1.1930 6 7 5.5248 1.0267 1.2094 7 6 6.2320 0.9704 0.0997 8 6 5.6039 1.0209 -1.1451 9 6 6.3978 0.9570 -2.3906 10 8 5.9215 0.4548 -3.3899 11 7 7.6496 1.4558 -2.4182 12 6 8.2567 1.9792 -1.1919 13 6 8.4030 1.4746 -3.6744 14 6 8.0757 2.7544 -4.4463 15 1 7.0313 2.8106 -4.7531 16 6 8.5937 4.0366 -3.7700 17 6 9.0111 4.4922 -5.1801 18 7 9.0311 3.0562 -5.5300 19 6 9.6760 2.3066 -6.4772 20 1 9.6672 1.2287 -6.4108 21 6 10.3413 2.9321 -7.5227 22 7 11.1816 2.2487 -8.2706 23 14 10.0440 4.7436 -7.8681 24 1 10.9636 5.5632 -7.0388 25 1 10.2937 5.0209 -9.3055 26 1 8.6382 5.0869 -7.5346 27 6 4.2089 1.1314 -1.1949 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.6689 1.1741 2.1268 34 1 7.3072 0.8852 0.1539 35 1 8.8328 1.1912 -0.7068 36 1 8.9158 2.8113 -1.4393 37 1 7.4733 2.3244 -0.5173 38 1 9.4710 1.4439 -3.4581 39 1 8.1291 0.6076 -4.2755 40 1 7.8073 4.6472 -3.3264 41 1 9.4328 3.8685 -3.0950 42 1 8.2420 5.0596 -5.7040 43 1 9.9904 4.9696 -5.2156 44 1 11.6462 2.6858 -9.0014 45 1 3.6896 1.1678 -2.1411 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085647250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:14 Heat of formation + Delta-G solvation = 46.102541 kcal Electronic energy + Delta-G solvation = -26583.276801 eV Core-core repulsion = 22797.504416 eV Total energy + Delta-G solvation = -3785.772386 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.10235 -39.48188 -38.24282 -37.97765 -35.55498 -33.33613 -32.53697 -32.12468 -29.08348 -28.39403 -27.79547 -26.90509 -25.83239 -24.73683 -23.16260 -22.97915 -22.39195 -19.87748 -19.14154 -17.66752 -17.33041 -17.03638 -16.86026 -16.78380 -15.99047 -15.78398 -15.69325 -15.31570 -15.03208 -14.55768 -14.01328 -13.81143 -13.57599 -13.43901 -13.27272 -13.02068 -12.96178 -12.84184 -12.56412 -12.32013 -11.95588 -11.83803 -11.79173 -11.56134 -11.16475 -10.71461 -10.31930 -10.21630 -10.19960 -10.12714 -10.09691 -9.92320 -9.62962 -9.38953 -9.33121 -8.93091 -8.49263 -7.14540 -5.87717 -3.20952 0.40515 0.80960 2.65708 2.93030 3.28764 3.34899 3.45299 3.46663 3.69203 3.99950 4.25112 4.37843 4.51575 4.56096 4.58195 4.62954 4.68200 4.82751 4.93574 4.95016 4.99828 5.16465 5.19433 5.21883 5.26427 5.27594 5.34400 5.53671 5.62314 5.72894 5.76973 5.79687 5.89682 6.07755 6.17828 6.20892 6.31805 6.37623 6.47303 6.53585 6.65587 6.99913 7.19706 7.38434 7.50915 8.14240 8.37723 8.71372 9.66729 10.30338 11.29172 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.022253 B = 0.002691 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.959363 B =10403.174272 C =10821.538631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.108 3.892 4 C -0.153 4.153 5 C 0.137 3.863 6 N -0.488 5.488 7 C 0.122 3.878 8 C -0.179 4.179 9 C 0.557 3.443 10 O -0.525 6.525 11 N -0.599 5.599 12 C 0.057 3.943 13 C 0.119 3.881 14 C 0.134 3.866 15 H 0.052 0.948 16 C -0.145 4.145 17 C 0.097 3.903 18 N -0.616 5.616 19 C -0.227 4.227 20 H 0.100 0.900 21 C 0.014 3.986 22 N -0.921 5.921 23 Si 0.884 3.116 24 H -0.287 1.287 25 H -0.300 1.300 26 H -0.270 1.270 27 C 0.001 3.999 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.160 0.840 34 H 0.179 0.821 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.056 0.944 41 H 0.080 0.920 42 H 0.044 0.956 43 H 0.057 0.943 44 H 0.262 0.738 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.919 0.871 22.969 28.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.031 3.969 4 C -0.155 4.155 5 C -0.020 4.020 6 N -0.196 5.196 7 C -0.036 4.036 8 C -0.184 4.184 9 C 0.344 3.656 10 O -0.402 6.402 11 N -0.332 5.332 12 C -0.086 4.086 13 C -0.004 4.004 14 C 0.026 3.974 15 H 0.069 0.931 16 C -0.183 4.183 17 C -0.028 4.028 18 N -0.344 5.344 19 C -0.353 4.353 20 H 0.118 0.882 21 C -0.183 4.183 22 N -0.567 5.567 23 Si 0.714 3.286 24 H -0.214 1.214 25 H -0.228 1.228 26 H -0.195 1.195 27 C -0.026 4.026 28 H 0.062 0.938 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.177 0.823 34 H 0.196 0.804 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -16.370 0.272 22.897 28.148 hybrid contribution -0.789 1.340 -1.310 2.033 sum -17.159 1.613 21.587 27.623 Atomic orbital electron populations 1.22785 0.80560 1.03115 1.00149 1.87988 1.19952 1.27051 1.95443 1.21226 0.88590 0.85485 1.01598 1.20527 0.95837 1.04959 0.94213 1.22877 0.90079 0.91588 0.97455 1.67842 1.07798 1.13136 1.30796 1.23885 1.01420 0.91598 0.86647 1.21036 0.95028 1.06958 0.95370 1.18061 0.81477 0.78772 0.87281 1.90830 1.70051 1.44104 1.35196 1.47690 1.14390 1.60475 1.10618 1.22508 0.99220 0.99867 0.87036 1.21768 0.95597 1.00050 0.83002 1.22467 0.93976 0.92440 0.88483 0.93075 1.23629 1.00043 0.97638 0.97039 1.22804 0.99219 0.88422 0.92329 1.46630 1.48354 1.02489 1.36954 1.18764 1.24022 0.91258 1.01234 0.88249 1.24793 0.98955 0.97585 0.96932 1.69746 1.29210 1.36026 1.21715 0.86844 0.78598 0.86528 0.76591 1.21448 1.22791 1.19529 1.21597 0.92343 0.89761 0.98886 0.93789 0.89364 0.93879 0.91744 0.91828 0.82309 0.80411 0.91726 0.90047 0.90069 0.89289 0.89709 0.92559 0.90138 0.93799 0.92504 0.92802 0.83653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.54 10.69 -35.23 -0.38 -3.91 16 3 C 0.11 0.79 6.08 36.01 0.22 1.01 16 4 C -0.15 -1.44 5.52 -104.54 -0.58 -2.01 16 5 C 0.14 1.23 10.85 -17.47 -0.19 1.05 16 6 N -0.49 -5.10 10.35 -12.91 -0.13 -5.23 16 7 C 0.12 1.26 8.65 -17.13 -0.15 1.11 16 8 C -0.18 -2.18 5.50 -104.82 -0.58 -2.75 16 9 C 0.56 8.44 7.45 -12.33 -0.09 8.35 16 10 O -0.53 -10.14 16.40 5.32 0.09 -10.05 16 11 N -0.60 -8.24 2.81 -182.70 -0.51 -8.75 16 12 C 0.06 0.53 8.60 59.84 0.51 1.04 16 13 C 0.12 2.05 5.32 -4.04 -0.02 2.02 16 14 C 0.13 2.61 4.55 -66.86 -0.30 2.30 16 15 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 16 C -0.15 -2.39 7.08 -25.80 -0.18 -2.58 16 17 C 0.10 2.04 5.76 -2.85 -0.02 2.02 16 18 N -0.62 -14.85 3.41 -169.73 -0.58 -15.43 16 19 C -0.23 -6.45 10.94 -15.06 -0.16 -6.62 16 20 H 0.10 3.00 8.06 -52.49 -0.42 2.57 16 21 C 0.01 0.43 5.50 -17.43 -0.10 0.33 16 22 N -0.92 -28.91 13.97 55.49 0.78 -28.14 16 23 Si 0.88 22.82 25.09 -169.99 -4.26 18.56 16 24 H -0.29 -7.19 6.86 56.52 0.39 -6.80 16 25 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 26 H -0.27 -6.75 5.75 56.52 0.33 -6.43 16 27 C 0.00 0.01 9.42 -38.87 -0.37 -0.36 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 32 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 33 H 0.16 0.98 8.06 -52.48 -0.42 0.56 16 34 H 0.18 1.47 4.68 -52.49 -0.25 1.23 16 35 H 0.06 0.48 7.40 -51.93 -0.38 0.10 16 36 H 0.08 0.73 6.35 -51.93 -0.33 0.40 16 37 H 0.08 0.66 4.78 -51.93 -0.25 0.41 16 38 H 0.09 1.50 8.05 -51.93 -0.42 1.08 16 39 H 0.08 1.68 7.46 -51.93 -0.39 1.29 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.08 1.19 6.97 -51.93 -0.36 0.83 16 42 H 0.04 0.94 6.71 -51.93 -0.35 0.59 16 43 H 0.06 1.22 6.60 -51.93 -0.34 0.88 16 44 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 45 H 0.15 1.65 8.00 -52.48 -0.42 1.23 16 LS Contribution 362.98 15.07 5.47 5.47 Total: -1.00 -35.93 362.98 -6.93 -42.86 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -6.51 Total: -1.57 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -0.89 Total: 6.20 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -0.45 Total: -57.55 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.29 Total: -13.97 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.26 Total: 18.56 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.93 -6.93 -42.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085647250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.966 kcal (2) G-P(sol) polarization free energy of solvation -35.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds