Wall clock time and date at job start Fri Apr 10 2020 18:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00176 * 2 1 4 4 H 1.48501 * 109.47238 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47435 * 300.00228 * 3 2 1 6 6 H 1.48509 * 109.46957 * 60.00353 * 3 2 1 7 7 C 1.38814 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00136 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99872 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99846 * 179.97438 * 9 7 2 11 11 H 1.09003 * 112.84858 * 336.20447 * 10 9 7 12 12 C 1.53953 * 113.74214 * 107.40074 * 10 9 7 13 13 C 1.53777 * 87.01821 * 139.94477 * 12 10 9 14 14 H 1.09000 * 113.61405 * 89.23526 * 13 12 10 15 15 C 1.53004 * 113.61458 * 220.04891 * 13 12 10 16 16 N 1.46499 * 109.47198 * 274.13836 * 15 13 12 17 17 C 1.34777 * 119.99665 * 180.27868 * 16 15 13 18 18 O 1.21593 * 120.00264 * 359.72086 * 17 16 15 19 19 C 1.47519 * 119.99665 * 179.72393 * 17 16 15 20 20 C 1.36597 * 125.77183 * 179.71279 * 19 17 16 21 21 N 1.34814 * 106.84007 * 179.89941 * 20 19 17 22 22 C 1.46507 * 126.59046 * 180.13116 * 21 20 19 23 23 C 1.53778 * 113.61437 * 14.38533 * 22 21 20 24 24 C 1.53964 * 87.01736 * 220.04648 * 23 22 21 25 25 C 1.53774 * 113.61431 * 276.77367 * 22 21 20 26 26 N 1.40206 * 106.81197 * 0.35585 * 21 20 19 27 27 N 1.28761 * 108.36604 * 359.77683 * 26 21 20 28 28 C 1.53770 * 113.61531 * 205.00165 * 10 9 7 29 29 H 0.97003 * 119.99644 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99874 * 0.02562 * 9 7 2 31 31 H 1.09002 * 113.61150 * 25.42438 * 12 10 9 32 32 H 1.09002 * 113.67192 * 254.47458 * 12 10 9 33 33 H 1.09009 * 109.46730 * 154.13623 * 15 13 12 34 34 H 1.08998 * 109.46846 * 34.14168 * 15 13 12 35 35 H 0.97001 * 119.99790 * 359.97438 * 16 15 13 36 36 H 1.07999 * 126.57979 * 0.03933 * 20 19 17 37 37 H 1.09004 * 112.84241 * 145.57727 * 22 21 20 38 38 H 1.08995 * 113.61584 * 334.55682 * 23 22 21 39 39 H 1.08995 * 113.61828 * 105.47223 * 23 22 21 40 40 H 1.08999 * 113.53079 * 270.81311 * 24 23 22 41 41 H 1.08993 * 113.74669 * 139.94154 * 24 23 22 42 42 H 1.09008 * 113.61427 * 254.53366 * 25 22 21 43 43 H 1.08997 * 113.61744 * 25.43049 * 25 22 21 44 44 H 1.09002 * 113.61808 * 105.38951 * 28 10 9 45 45 H 1.08999 * 113.69178 * 334.49726 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0017 11 1 3.0652 -3.5637 -0.4077 12 6 2.0038 -4.4050 1.3428 13 6 1.8499 -5.6983 0.5253 14 1 2.7995 -6.1646 0.2628 15 6 0.8484 -6.6872 1.1255 16 7 1.5238 -7.5217 2.1224 17 6 0.8351 -8.4744 2.7817 18 8 -0.3479 -8.6378 2.5527 19 6 1.5166 -9.3187 3.7811 20 6 0.9347 -10.3104 4.5186 21 7 1.8995 -10.8308 5.3033 22 6 1.7468 -11.9246 6.2661 23 6 0.4394 -12.7162 6.0967 24 6 0.3571 -12.7535 7.6337 25 6 1.2063 -11.4714 7.6325 26 7 3.0759 -10.1206 5.0247 27 7 2.8135 -9.2384 4.1243 28 6 1.2595 -4.8285 -0.5971 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3880 -0.0005 31 1 1.1274 -4.1610 1.9432 32 1 2.9337 -4.3546 1.9093 33 1 0.4447 -7.3201 0.3351 34 1 0.0362 -6.1379 1.6015 35 1 2.4675 -7.3915 2.3047 36 1 -0.0992 -10.6199 4.4788 37 1 2.6334 -12.5551 6.3343 38 1 -0.3614 -12.1422 5.6305 39 1 0.5785 -13.6970 5.6422 40 1 0.8628 -13.6118 8.0759 41 1 -0.6507 -12.6092 8.0229 42 1 1.9639 -11.4487 8.4160 43 1 0.6158 -10.5564 7.5869 44 1 1.5894 -5.1196 -1.5944 45 1 0.1791 -4.7018 -0.5288 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086088105.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:17 Heat of formation + Delta-G solvation = 110.376884 kcal Electronic energy + Delta-G solvation = -25347.909189 eV Core-core repulsion = 21597.216699 eV Total energy + Delta-G solvation = -3750.692490 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.58722 -39.74443 -39.25244 -38.29175 -34.69421 -33.56147 -33.15204 -31.30963 -30.18509 -27.64721 -26.58514 -26.38650 -25.02765 -24.13014 -23.27298 -22.73912 -20.99940 -20.66402 -20.19694 -19.14623 -18.46475 -17.02689 -16.72919 -16.58291 -16.11444 -16.01146 -15.21863 -15.01030 -14.86153 -14.55376 -14.17140 -13.74793 -13.50214 -13.38640 -13.27926 -13.13838 -12.87171 -12.62074 -12.35145 -11.86054 -11.76456 -11.59008 -11.50019 -11.34609 -11.21981 -11.18820 -10.82647 -10.59387 -10.50935 -10.31041 -10.09180 -9.94814 -9.77726 -9.58279 -9.45218 -8.96172 -8.83241 -6.92237 -5.75182 -3.03605 0.82348 1.50985 1.64252 3.09282 3.20510 3.43247 3.45029 3.50712 3.52945 3.63196 3.93385 3.93755 3.97123 4.38965 4.52619 4.61535 4.70899 4.79823 4.86496 4.98283 5.04344 5.05828 5.08681 5.16741 5.19989 5.29386 5.44215 5.50789 5.57028 5.58757 5.86880 5.90195 5.98599 6.03834 6.13829 6.31339 6.36708 6.42149 6.50026 6.66754 6.88934 7.17179 7.41559 7.72555 7.73337 8.13972 8.43619 9.54689 10.13498 10.47722 11.47339 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.026780 B = 0.001871 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.308161 B =14964.090614 C =15219.737656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.713 5.713 10 C 0.165 3.835 11 H 0.075 0.925 12 C -0.161 4.161 13 C -0.128 4.128 14 H 0.089 0.911 15 C 0.132 3.868 16 N -0.707 5.707 17 C 0.601 3.399 18 O -0.543 6.543 19 C -0.099 4.099 20 C 0.091 3.909 21 N -0.351 5.351 22 C 0.121 3.879 23 C -0.147 4.147 24 C -0.135 4.135 25 C -0.146 4.146 26 N -0.065 5.065 27 N -0.205 5.205 28 C -0.141 4.141 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.409 0.591 36 H 0.202 0.798 37 H 0.135 0.865 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.061 0.939 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.647 -30.378 13.839 33.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.351 5.351 10 C 0.053 3.947 11 H 0.093 0.907 12 C -0.202 4.202 13 C -0.147 4.147 14 H 0.108 0.892 15 C 0.009 3.991 16 N -0.357 5.357 17 C 0.385 3.615 18 O -0.420 6.420 19 C -0.238 4.238 20 C -0.065 4.065 21 N -0.136 5.136 22 C 0.020 3.980 23 C -0.186 4.186 24 C -0.173 4.173 25 C -0.184 4.184 26 N -0.045 5.045 27 N -0.078 5.078 28 C -0.181 4.181 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.244 0.756 36 H 0.219 0.781 37 H 0.152 0.848 38 H 0.115 0.885 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.111 0.889 44 H 0.080 0.920 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.421 -30.143 13.981 33.315 hybrid contribution -0.413 0.726 0.057 0.837 sum 2.009 -29.417 14.038 32.657 Atomic orbital electron populations 1.69675 1.05124 1.25566 1.57694 1.24770 0.95531 0.97780 1.02968 0.86117 0.78806 0.84124 0.77150 1.20531 1.21880 1.21904 1.19365 0.91127 0.84258 1.42576 0.91021 1.42418 1.05767 0.99902 1.86973 1.21558 0.95310 0.84999 0.92810 0.90664 1.23969 1.01446 0.94906 0.99903 1.22647 0.98468 0.94393 0.99185 0.89243 1.21507 0.95470 0.91949 0.90136 1.45843 1.14358 1.34873 1.40654 1.16752 0.85616 0.79537 0.79623 1.90809 1.14679 1.70270 1.66240 1.21526 0.91338 1.04164 1.06783 1.23229 0.97085 0.94509 0.91708 1.50582 1.08021 1.26220 1.28736 1.23463 1.00856 0.86122 0.87603 1.23514 0.95530 1.01231 0.98312 1.22746 1.01637 0.97897 0.95068 1.23457 1.00162 0.99341 0.95481 1.81996 1.04117 1.04420 1.13962 1.74650 1.13477 1.13424 1.06261 1.23433 1.00999 0.96968 0.96690 0.93547 0.78079 0.90359 0.92658 0.91483 0.90933 0.75615 0.78127 0.84778 0.88494 0.89247 0.88969 0.89647 0.89530 0.88898 0.91984 0.90088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.46 13.06 55.49 0.72 -27.73 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 7 C -0.24 -6.79 9.97 -15.06 -0.15 -6.94 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.71 -18.03 5.41 -52.55 -0.28 -18.31 16 10 C 0.17 3.26 4.48 -67.03 -0.30 2.96 16 11 H 0.08 1.47 8.10 -51.93 -0.42 1.05 16 12 C -0.16 -2.76 7.45 -25.83 -0.19 -2.96 16 13 C -0.13 -1.78 3.75 -89.81 -0.34 -2.12 16 14 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 15 C 0.13 1.81 5.50 -4.04 -0.02 1.79 16 16 N -0.71 -9.19 5.55 -61.35 -0.34 -9.54 16 17 C 0.60 8.32 7.82 -12.48 -0.10 8.22 16 18 O -0.54 -8.79 16.86 5.28 0.09 -8.71 16 19 C -0.10 -1.19 6.99 -83.55 -0.58 -1.78 16 20 C 0.09 0.83 10.49 -16.83 -0.18 0.65 16 21 N -0.35 -2.93 3.83 -53.77 -0.21 -3.14 16 22 C 0.12 0.54 5.05 -67.12 -0.34 0.20 16 23 C -0.15 -0.36 7.47 -25.82 -0.19 -0.56 16 24 C -0.14 -0.24 8.09 -25.82 -0.21 -0.45 16 25 C -0.15 -0.52 7.88 -25.92 -0.20 -0.72 16 26 N -0.07 -0.76 13.78 60.35 0.83 0.07 16 27 N -0.20 -2.62 12.04 32.85 0.40 -2.22 16 28 C -0.14 -2.28 7.39 -25.92 -0.19 -2.48 16 29 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.39 10.35 7.92 -40.82 -0.32 10.02 16 31 H 0.08 1.47 7.92 -51.93 -0.41 1.06 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 34 H 0.07 1.10 7.87 -51.93 -0.41 0.69 16 35 H 0.41 4.86 8.16 -40.82 -0.33 4.53 16 36 H 0.20 1.25 6.79 -52.49 -0.36 0.89 16 37 H 0.13 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.10 0.24 6.39 -51.93 -0.33 -0.09 16 39 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 40 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 41 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 42 H 0.09 0.27 8.14 -51.92 -0.42 -0.15 16 43 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.08 1.36 8.08 -51.93 -0.42 0.94 16 LS Contribution 378.01 15.07 5.70 5.70 Total: -1.00 -34.24 378.01 -7.99 -42.22 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -6.78 Total: 8.77 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -3.09 Total: -4.69 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: 1.12 Total: -60.88 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.71 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.24 -7.99 -42.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086088105.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.600 kcal (2) G-P(sol) polarization free energy of solvation -34.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds