Wall clock time and date at job start Fri Apr 10 2020 18:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00176 * 2 1 4 4 H 1.48501 * 109.47238 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47435 * 300.00228 * 3 2 1 6 6 H 1.48509 * 109.46957 * 60.00353 * 3 2 1 7 7 C 1.38814 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00136 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99872 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99846 * 179.97438 * 9 7 2 11 11 H 1.09003 * 112.84858 * 336.20447 * 10 9 7 12 12 C 1.53953 * 113.74214 * 107.40074 * 10 9 7 13 13 C 1.53777 * 87.01821 * 139.94477 * 12 10 9 14 14 H 1.09000 * 113.61405 * 89.23526 * 13 12 10 15 15 C 1.53004 * 113.61458 * 220.04891 * 13 12 10 16 16 N 1.46499 * 109.47198 * 274.13836 * 15 13 12 17 17 C 1.34777 * 119.99665 * 180.27868 * 16 15 13 18 18 O 1.21593 * 120.00264 * 359.72086 * 17 16 15 19 19 C 1.47519 * 119.99665 * 179.72393 * 17 16 15 20 20 C 1.36597 * 125.77183 * 179.71279 * 19 17 16 21 21 N 1.34814 * 106.84007 * 179.89941 * 20 19 17 22 22 C 1.46507 * 126.59046 * 180.13116 * 21 20 19 23 23 C 1.53778 * 113.61437 * 14.38533 * 22 21 20 24 24 C 1.53964 * 87.01736 * 220.04648 * 23 22 21 25 25 C 1.53774 * 113.61431 * 276.77367 * 22 21 20 26 26 N 1.40206 * 106.81197 * 0.35585 * 21 20 19 27 27 N 1.28761 * 108.36604 * 359.77683 * 26 21 20 28 28 C 1.53770 * 113.61531 * 205.00165 * 10 9 7 29 29 H 0.97003 * 119.99644 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99874 * 0.02562 * 9 7 2 31 31 H 1.09002 * 113.61150 * 25.42438 * 12 10 9 32 32 H 1.09002 * 113.67192 * 254.47458 * 12 10 9 33 33 H 1.09009 * 109.46730 * 154.13623 * 15 13 12 34 34 H 1.08998 * 109.46846 * 34.14168 * 15 13 12 35 35 H 0.97001 * 119.99790 * 359.97438 * 16 15 13 36 36 H 1.07999 * 126.57979 * 0.03933 * 20 19 17 37 37 H 1.09004 * 112.84241 * 145.57727 * 22 21 20 38 38 H 1.08995 * 113.61584 * 334.55682 * 23 22 21 39 39 H 1.08995 * 113.61828 * 105.47223 * 23 22 21 40 40 H 1.08999 * 113.53079 * 270.81311 * 24 23 22 41 41 H 1.08993 * 113.74669 * 139.94154 * 24 23 22 42 42 H 1.09008 * 113.61427 * 254.53366 * 25 22 21 43 43 H 1.08997 * 113.61744 * 25.43049 * 25 22 21 44 44 H 1.09002 * 113.61808 * 105.38951 * 28 10 9 45 45 H 1.08999 * 113.69178 * 334.49726 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0017 11 1 3.0652 -3.5637 -0.4077 12 6 2.0038 -4.4050 1.3428 13 6 1.8499 -5.6983 0.5253 14 1 2.7995 -6.1646 0.2628 15 6 0.8484 -6.6872 1.1255 16 7 1.5238 -7.5217 2.1224 17 6 0.8351 -8.4744 2.7817 18 8 -0.3479 -8.6378 2.5527 19 6 1.5166 -9.3187 3.7811 20 6 0.9347 -10.3104 4.5186 21 7 1.8995 -10.8308 5.3033 22 6 1.7468 -11.9246 6.2661 23 6 0.4394 -12.7162 6.0967 24 6 0.3571 -12.7535 7.6337 25 6 1.2063 -11.4714 7.6325 26 7 3.0759 -10.1206 5.0247 27 7 2.8135 -9.2384 4.1243 28 6 1.2595 -4.8285 -0.5971 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3880 -0.0005 31 1 1.1274 -4.1610 1.9432 32 1 2.9337 -4.3546 1.9093 33 1 0.4447 -7.3201 0.3351 34 1 0.0362 -6.1379 1.6015 35 1 2.4675 -7.3915 2.3047 36 1 -0.0992 -10.6199 4.4788 37 1 2.6334 -12.5551 6.3343 38 1 -0.3614 -12.1422 5.6305 39 1 0.5785 -13.6970 5.6422 40 1 0.8628 -13.6118 8.0759 41 1 -0.6507 -12.6092 8.0229 42 1 1.9639 -11.4487 8.4160 43 1 0.6158 -10.5564 7.5869 44 1 1.5894 -5.1196 -1.5944 45 1 0.1791 -4.7018 -0.5288 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086088105.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:16 Heat of formation + Delta-G solvation = 86.206981 kcal Electronic energy + Delta-G solvation = -25348.957274 eV Core-core repulsion = 21597.216699 eV Total energy + Delta-G solvation = -3751.740576 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.35129 -40.75224 -39.84603 -39.53517 -36.07721 -35.05567 -34.12192 -32.36868 -31.91323 -28.86472 -26.98959 -26.82848 -26.43862 -25.88048 -24.41554 -23.35008 -22.40074 -21.63694 -20.62865 -20.45369 -19.37391 -18.95378 -17.56712 -17.22673 -17.21107 -16.64317 -16.53643 -16.26679 -15.82662 -15.74273 -15.56653 -15.09626 -14.79505 -14.36950 -14.14867 -13.77260 -13.52407 -13.40353 -13.27703 -13.20938 -13.03241 -12.94404 -12.89678 -12.65907 -12.16392 -12.06123 -12.05347 -11.86134 -11.64806 -11.54347 -11.51200 -11.23728 -11.14871 -11.00702 -10.80643 -10.45003 -10.03177 -8.96185 -7.93799 -5.21786 0.09132 0.57243 1.03907 1.47706 1.48403 1.58555 2.09887 2.20246 2.57390 3.05904 3.15016 3.37002 3.38141 3.59695 3.72038 3.74756 3.76442 3.78149 3.87190 3.95271 4.14011 4.27662 4.35853 4.42221 4.46097 4.57356 4.59442 4.65502 4.74537 4.80266 4.89831 4.93191 5.00055 5.01017 5.05593 5.06802 5.23420 5.27077 5.34490 5.43295 5.50004 5.54239 5.74281 6.28968 6.40033 6.86731 7.10205 7.34388 8.12943 8.34903 9.29897 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.026780 B = 0.001871 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.308161 B =14964.090614 C =15219.737656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.973 3.027 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.296 1.296 7 C -0.241 4.241 8 H 0.078 0.922 9 N -0.729 5.729 10 C 0.143 3.857 11 H 0.079 0.921 12 C -0.155 4.155 13 C -0.098 4.098 14 H 0.117 0.883 15 C 0.138 3.862 16 N -0.703 5.703 17 C 0.602 3.398 18 O -0.571 6.571 19 C -0.123 4.123 20 C 0.107 3.893 21 N -0.336 5.336 22 C 0.104 3.896 23 C -0.142 4.142 24 C -0.124 4.124 25 C -0.148 4.148 26 N -0.089 5.089 27 N -0.224 5.224 28 C -0.132 4.132 29 H 0.250 0.750 30 H 0.373 0.627 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.415 0.585 36 H 0.230 0.770 37 H 0.147 0.853 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.565 -32.693 14.498 35.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.802 3.198 4 H -0.189 1.189 5 H -0.221 1.221 6 H -0.223 1.223 7 C -0.373 4.373 8 H 0.096 0.904 9 N -0.366 5.366 10 C 0.033 3.967 11 H 0.097 0.903 12 C -0.196 4.196 13 C -0.117 4.117 14 H 0.135 0.865 15 C 0.015 3.985 16 N -0.353 5.353 17 C 0.387 3.613 18 O -0.451 6.451 19 C -0.263 4.263 20 C -0.052 4.052 21 N -0.121 5.121 22 C 0.005 3.995 23 C -0.180 4.180 24 C -0.162 4.162 25 C -0.187 4.187 26 N -0.069 5.069 27 N -0.097 5.097 28 C -0.171 4.171 29 H 0.059 0.941 30 H 0.204 0.796 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.251 0.749 36 H 0.246 0.754 37 H 0.164 0.836 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.418 -32.519 14.663 35.835 hybrid contribution -0.681 1.304 -0.067 1.473 sum 2.737 -31.215 14.596 34.568 Atomic orbital electron populations 1.69832 1.06660 1.25901 1.59845 1.25592 0.96402 1.01202 1.04015 0.85072 0.78311 0.79852 0.76533 1.18891 1.22062 1.22314 1.19779 0.91610 0.85432 1.40515 0.90379 1.42623 1.05374 1.01171 1.87463 1.21982 0.95658 0.83953 0.95074 0.90258 1.23767 1.00944 0.96269 0.98620 1.22474 0.99450 0.93027 0.96768 0.86490 1.21347 0.94873 0.91889 0.90374 1.45775 1.14603 1.34548 1.40372 1.16954 0.85301 0.79464 0.79605 1.90786 1.15811 1.71180 1.67275 1.21441 0.91632 1.05453 1.07756 1.23623 0.98077 0.93135 0.90333 1.50889 1.06869 1.25988 1.28319 1.24054 1.02610 0.85569 0.87291 1.23562 0.94037 1.01422 0.98998 1.22741 1.01682 0.97189 0.94552 1.23475 1.00459 0.99859 0.94890 1.81907 1.05711 1.05019 1.14257 1.74609 1.13969 1.14215 1.06945 1.23294 1.00073 0.95443 0.98324 0.94120 0.79561 0.92422 0.91878 0.90662 0.92713 0.74875 0.75411 0.83553 0.88354 0.87899 0.87492 0.89098 0.89259 0.90145 0.90120 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.70 13.06 21.65 0.28 -60.42 16 2 C -0.08 -4.69 5.50 84.86 0.47 -4.23 16 3 Si 0.97 46.93 29.55 68.60 2.03 48.96 16 4 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 7 C -0.24 -13.60 9.97 84.03 0.84 -12.76 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 9 N -0.73 -37.37 5.41 -320.18 -1.73 -39.10 16 10 C 0.14 5.56 4.48 45.57 0.20 5.76 16 11 H 0.08 3.01 8.10 -2.39 -0.02 2.99 16 12 C -0.16 -5.23 7.45 31.18 0.23 -5.00 16 13 C -0.10 -2.56 3.75 -10.27 -0.04 -2.60 16 14 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 15 C 0.14 3.64 5.50 86.38 0.47 4.11 16 16 N -0.70 -17.62 5.55 -466.27 -2.59 -20.21 16 17 C 0.60 16.32 7.82 86.69 0.68 16.99 16 18 O -0.57 -18.24 16.86 -4.01 -0.07 -18.31 16 19 C -0.12 -2.88 6.99 40.81 0.29 -2.60 16 20 C 0.11 1.78 10.49 83.85 0.88 2.66 16 21 N -0.34 -5.16 3.83 -324.04 -1.24 -6.40 16 22 C 0.10 0.72 5.05 45.51 0.23 0.95 16 23 C -0.14 -0.31 7.47 31.18 0.23 -0.08 16 24 C -0.12 -0.11 8.09 31.18 0.25 0.15 16 25 C -0.15 -0.80 7.88 31.12 0.25 -0.55 16 26 N -0.09 -2.03 13.78 37.02 0.51 -1.52 16 27 N -0.22 -5.64 12.04 -50.00 -0.60 -6.24 16 28 C -0.13 -4.10 7.39 31.12 0.23 -3.87 16 29 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 30 H 0.37 20.62 7.92 -92.71 -0.73 19.89 16 31 H 0.06 2.19 7.92 -2.39 -0.02 2.17 16 32 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.05 1.66 7.87 -2.39 -0.02 1.64 16 35 H 0.41 9.38 8.16 -92.71 -0.76 8.62 16 36 H 0.23 2.34 6.79 -2.91 -0.02 2.32 16 37 H 0.15 0.66 8.14 -2.38 -0.02 0.64 16 38 H 0.10 0.22 6.39 -2.39 -0.02 0.20 16 39 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 40 H 0.11 -0.18 8.14 -2.39 -0.02 -0.20 16 41 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 42 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 43 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.07 2.38 8.08 -2.39 -0.02 2.37 16 Total: -1.00 -75.07 378.01 1.33 -73.74 By element: Atomic # 1 Polarization: 31.05 SS G_CDS: -0.47 Total: 30.58 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 5.21 Total: -1.07 kcal Atomic # 7 Polarization: -128.53 SS G_CDS: -5.37 Total: -133.90 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.07 Total: -18.31 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -75.07 1.33 -73.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086088105.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.943 kcal (2) G-P(sol) polarization free energy of solvation -75.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds