Wall clock time and date at job start Fri Apr 10 2020 18:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34593 * 119.47872 * 2 1 4 4 C 1.37997 * 120.46002 * 179.73089 * 3 2 1 5 5 C 1.47456 * 120.25799 * 180.28080 * 4 3 2 6 6 O 1.21596 * 120.00164 * 0.24095 * 5 4 3 7 7 N 1.34782 * 119.99698 * 180.24239 * 5 4 3 8 8 C 1.46502 * 120.00028 * 180.02562 * 7 5 4 9 9 C 1.52991 * 109.47251 * 180.02562 * 8 7 5 10 10 H 1.09006 * 110.43554 * 307.53461 * 9 8 7 11 11 C 1.54885 * 110.48957 * 70.22081 * 9 8 7 12 12 C 1.54896 * 102.75176 * 156.62401 * 11 9 8 13 13 C 1.54270 * 104.18911 * 322.05952 * 12 11 9 14 14 H 1.09004 * 110.06822 * 142.92113 * 13 12 11 15 15 N 1.46500 * 110.02935 * 264.32211 * 13 12 11 16 16 C 1.36939 * 120.00432 * 272.16833 * 15 13 12 17 17 H 1.08004 * 119.99667 * 0.02562 * 16 15 13 18 18 C 1.38806 * 120.00485 * 180.02562 * 16 15 13 19 19 N 1.31620 * 119.99916 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00194 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47204 * 90.00239 * 20 18 16 22 22 H 1.48502 * 109.47053 * 209.99906 * 20 18 16 23 23 H 1.48495 * 109.47172 * 330.00103 * 20 18 16 24 24 C 1.53870 * 106.60406 * 23.61022 * 13 12 11 25 25 C 1.41595 * 119.48260 * 0.52673 * 4 3 2 26 26 C 1.35980 * 119.01015 * 359.45873 * 25 4 3 27 27 C 1.34536 * 119.47594 * 179.97438 * 2 1 3 28 28 O 1.21962 * 119.74852 * 0.02562 * 27 2 1 29 29 H 1.08999 * 109.46865 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47136 * 300.02024 * 1 2 3 31 31 H 1.08997 * 109.46828 * 60.02156 * 1 2 3 32 32 H 1.08005 * 119.77260 * 359.97438 * 3 2 1 33 33 H 0.97004 * 119.99879 * 0.02562 * 7 5 4 34 34 H 1.09005 * 109.46899 * 299.99726 * 8 7 5 35 35 H 1.08998 * 109.47149 * 59.99166 * 8 7 5 36 36 H 1.08998 * 110.76117 * 274.93510 * 11 9 8 37 37 H 1.09001 * 110.75958 * 38.31034 * 11 9 8 38 38 H 1.08999 * 110.48693 * 203.38366 * 12 11 9 39 39 H 1.08998 * 110.60231 * 80.78710 * 12 11 9 40 40 H 0.97001 * 119.99926 * 92.17342 * 15 13 12 41 41 H 0.97000 * 120.00455 * 180.02562 * 19 18 16 42 42 H 1.09001 * 110.03285 * 240.71435 * 24 13 12 43 43 H 1.09000 * 110.03594 * 119.28530 * 24 13 12 44 44 H 1.08002 * 120.49836 * 179.74027 * 25 4 3 45 45 H 1.07993 * 120.24972 * 180.30708 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1274 1.1717 0.0000 4 6 3.5071 1.1953 0.0056 5 6 4.2282 2.4815 0.0118 6 8 3.6070 3.5268 0.0165 7 7 5.5759 2.4985 0.0123 8 6 6.2924 3.7763 0.0191 9 6 7.8000 3.5158 0.0175 10 1 8.0691 2.8334 0.8239 11 6 8.2505 2.9469 -1.3508 12 6 9.7540 3.3164 -1.3964 13 6 9.8196 4.7149 -0.7485 14 1 10.7253 4.8074 -0.1491 15 7 9.7965 5.7498 -1.7852 16 6 10.9668 6.1722 -2.3573 17 1 11.9068 5.7421 -2.0444 18 6 10.9451 7.1531 -3.3392 19 7 9.7996 7.6776 -3.7201 20 14 12.5414 7.7287 -4.1199 21 1 12.8393 6.8933 -5.3110 22 1 12.4067 9.1488 -4.5326 23 1 13.6472 7.6015 -3.1370 24 6 8.5773 4.8417 0.1505 25 6 4.2251 -0.0251 0.0000 26 6 3.5344 -1.1965 0.0005 27 6 2.1270 -1.1712 0.0005 28 8 1.5030 -2.2191 0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5142 0.8898 31 1 -0.3633 0.5135 -0.8902 32 1 1.5752 2.0999 -0.0004 33 1 6.0715 1.6646 0.0082 34 1 6.0222 4.3491 -0.8682 35 1 6.0215 4.3401 0.9117 36 1 8.1174 1.8656 -1.3824 37 1 7.7097 3.4277 -2.1660 38 1 10.1059 3.3567 -2.4272 39 1 10.3423 2.6016 -0.8210 40 1 8.9523 6.1359 -2.0664 41 1 9.7842 8.3628 -4.4065 42 1 7.9572 5.6732 -0.1845 43 1 8.8800 4.9948 1.1864 44 1 5.3051 -0.0257 0.0000 45 1 4.0617 -2.1389 0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086743039.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:59 Heat of formation + Delta-G solvation = -57.393342 kcal Electronic energy + Delta-G solvation = -25860.892390 eV Core-core repulsion = 22070.632086 eV Total energy + Delta-G solvation = -3790.260304 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.58774 -40.74108 -39.41533 -37.99596 -36.30056 -35.79422 -34.83259 -32.49304 -31.30105 -30.21098 -29.01544 -28.52086 -26.18450 -25.22349 -24.46907 -24.17309 -21.86490 -21.08878 -20.65366 -19.28988 -19.02055 -18.59276 -17.81380 -17.25875 -17.15963 -16.76160 -16.61254 -16.35939 -15.97789 -15.63639 -15.30372 -15.12443 -14.82842 -14.42484 -14.35978 -14.22256 -14.15922 -13.54793 -13.47679 -13.11948 -13.09274 -12.94089 -12.67010 -12.44798 -12.33050 -12.13277 -11.90944 -11.65550 -11.58647 -11.45332 -11.36133 -11.25006 -11.21090 -11.03108 -10.86798 -10.08310 -9.14276 -8.93195 -7.91248 -5.18144 -0.27578 0.22370 1.43244 1.47714 1.48929 1.57261 1.90765 2.23511 2.58521 2.65566 3.40805 3.52404 3.61296 3.71204 3.75975 3.83344 3.86725 3.91354 4.06935 4.26022 4.37534 4.37827 4.49505 4.61229 4.66729 4.73418 4.74215 4.84056 4.86908 4.91713 4.92791 5.02491 5.04406 5.13927 5.20949 5.27934 5.29994 5.42833 5.49250 5.55868 5.64023 5.71902 5.81327 6.32701 6.57365 6.76262 7.24163 7.37229 8.18512 8.38543 9.32420 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.027757 B = 0.002085 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.511853 B =13424.676606 C =13674.531716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.488 5.488 3 C 0.219 3.781 4 C -0.260 4.260 5 C 0.575 3.425 6 O -0.586 6.586 7 N -0.708 5.708 8 C 0.135 3.865 9 C -0.084 4.084 10 H 0.112 0.888 11 C -0.107 4.107 12 C -0.140 4.140 13 C 0.160 3.840 14 H 0.042 0.958 15 N -0.734 5.734 16 C -0.233 4.233 17 H 0.075 0.925 18 C -0.081 4.081 19 N -0.972 5.972 20 Si 0.969 3.031 21 H -0.289 1.289 22 H -0.298 1.298 23 H -0.269 1.269 24 C -0.117 4.117 25 C 0.022 3.978 26 C -0.258 4.258 27 C 0.501 3.499 28 O -0.588 6.588 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.197 0.803 33 H 0.414 0.586 34 H 0.046 0.954 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.041 0.959 38 H 0.036 0.964 39 H 0.078 0.922 40 H 0.370 0.630 41 H 0.249 0.751 42 H 0.050 0.950 43 H 0.082 0.918 44 H 0.170 0.830 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.243 -17.981 11.891 26.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.193 5.193 3 C 0.085 3.915 4 C -0.269 4.269 5 C 0.363 3.637 6 O -0.468 6.468 7 N -0.359 5.359 8 C 0.011 3.989 9 C -0.103 4.103 10 H 0.130 0.870 11 C -0.144 4.144 12 C -0.180 4.180 13 C 0.052 3.948 14 H 0.060 0.940 15 N -0.374 5.374 16 C -0.366 4.366 17 H 0.093 0.907 18 C -0.273 4.273 19 N -0.623 5.623 20 Si 0.799 3.201 21 H -0.217 1.217 22 H -0.225 1.225 23 H -0.194 1.194 24 C -0.156 4.156 25 C 0.001 3.999 26 C -0.279 4.279 27 C 0.305 3.695 28 O -0.474 6.474 29 H 0.110 0.890 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.213 0.787 33 H 0.253 0.747 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.097 0.903 40 H 0.202 0.798 41 H 0.057 0.943 42 H 0.069 0.931 43 H 0.100 0.900 44 H 0.188 0.812 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -15.911 -17.922 11.890 26.753 hybrid contribution 0.758 0.617 -1.031 1.421 sum -15.153 -17.305 10.858 25.436 Atomic orbital electron populations 1.22608 0.74721 1.06451 1.06216 1.45279 1.11189 1.06312 1.56558 1.22538 0.93074 0.90301 0.85567 1.19349 0.92942 0.93848 1.20723 1.17863 0.82423 0.87929 0.75463 1.90797 1.68212 1.34985 1.52802 1.45682 1.05534 1.10339 1.74380 1.21312 0.91014 0.85128 1.01433 1.22117 0.91786 0.97453 0.98915 0.86960 1.22457 0.94990 1.00926 0.96029 1.22959 0.97081 0.97892 1.00100 1.21161 0.96488 0.88257 0.88911 0.93956 1.42771 1.05537 1.44741 1.44395 1.19642 0.87936 1.14835 1.14138 0.90732 1.25528 0.99689 1.00724 1.01341 1.69820 1.25653 1.32021 1.34793 0.85190 0.79760 0.76671 0.78486 1.21658 1.22523 1.19392 1.22378 0.95970 0.97236 1.00034 1.21708 1.02034 0.89628 0.86574 1.22071 0.91465 1.01214 1.13139 1.17714 0.90475 0.82691 0.78585 1.90915 1.70406 1.31408 1.54632 0.88998 0.87277 0.87522 0.78655 0.74737 0.93533 0.91441 0.89166 0.94019 0.94539 0.90349 0.79786 0.94256 0.93099 0.89971 0.81217 0.81772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.55 127.77 1.35 1.67 16 2 N -0.49 -6.69 2.95 -673.10 -1.99 -8.68 16 3 C 0.22 2.76 9.92 84.21 0.84 3.60 16 4 C -0.26 -3.75 5.88 -20.08 -0.12 -3.87 16 5 C 0.57 11.41 7.76 86.67 0.67 12.08 16 6 O -0.59 -16.40 16.32 -4.02 -0.07 -16.46 16 7 N -0.71 -11.66 5.40 -466.35 -2.52 -14.18 16 8 C 0.13 2.93 4.96 86.38 0.43 3.36 16 9 C -0.08 -1.73 2.89 -9.72 -0.03 -1.76 16 10 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 11 C -0.11 -2.57 6.19 31.89 0.20 -2.37 16 12 C -0.14 -4.33 6.54 31.67 0.21 -4.13 16 13 C 0.16 5.86 3.55 45.72 0.16 6.02 16 14 H 0.04 1.58 8.09 -2.38 -0.02 1.57 16 15 N -0.73 -36.23 5.08 -319.51 -1.62 -37.85 16 16 C -0.23 -12.83 9.96 84.03 0.84 -11.99 16 17 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 18 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16 19 N -0.97 -59.92 13.06 21.65 0.28 -59.63 16 20 Si 0.97 46.29 29.55 68.60 2.03 48.31 16 21 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 22 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 24 C -0.12 -3.35 6.14 31.32 0.19 -3.16 16 25 C 0.02 0.24 9.57 22.57 0.22 0.45 16 26 C -0.26 -3.74 9.97 22.36 0.22 -3.51 16 27 C 0.50 9.74 7.40 84.90 0.63 10.37 16 28 O -0.59 -15.82 16.33 -5.19 -0.08 -15.90 16 29 H 0.09 1.08 6.83 -2.39 -0.02 1.07 16 30 H 0.11 0.36 8.14 -2.38 -0.02 0.34 16 31 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.20 1.82 7.59 -2.91 -0.02 1.80 16 33 H 0.41 4.01 6.50 -92.70 -0.60 3.41 16 34 H 0.05 1.30 8.02 -2.38 -0.02 1.28 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.04 1.25 7.96 -2.39 -0.02 1.23 16 38 H 0.04 1.39 8.04 -2.39 -0.02 1.37 16 39 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.37 19.92 7.52 -92.71 -0.70 19.22 16 41 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 42 H 0.05 1.70 7.31 -2.39 -0.02 1.68 16 43 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.17 0.69 6.48 -2.91 -0.02 0.67 16 45 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -79.26 372.30 2.02 -77.24 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: -0.28 Total: 24.59 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 6.27 Total: 2.55 kcal Atomic # 7 Polarization: -114.50 SS G_CDS: -5.84 Total: -120.34 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -0.15 Total: -32.36 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.31 kcal Total: -79.26 2.02 -77.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086743039.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.849 kcal (2) G-P(sol) polarization free energy of solvation -79.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds