Wall clock time and date at job start Fri Apr 10 2020 18:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 113.31205 * 2 1 4 4 C 1.55774 * 114.08687 * 132.79803 * 2 1 3 5 5 H 1.09006 * 114.29361 * 37.07222 * 4 2 1 6 6 N 1.46503 * 114.12643 * 264.52869 * 4 2 1 7 7 C 1.34770 * 120.00259 * 161.34662 * 6 4 2 8 8 O 1.21622 * 120.00382 * 0.02562 * 7 6 4 9 9 C 1.47233 * 120.00212 * 180.02562 * 7 6 4 10 10 C 1.37004 * 127.19387 * 179.97438 * 9 7 6 11 11 N 1.33316 * 106.37695 * 180.02562 * 10 9 7 12 12 N 1.28517 * 109.44000 * 359.75273 * 11 10 9 13 13 N 1.28724 * 110.63512 * 0.41655 * 12 11 10 14 14 H 0.96993 * 126.03737 * 179.85878 * 13 12 11 15 15 C 1.49997 * 83.86874 * 150.80834 * 4 2 1 16 16 H 1.08997 * 112.50517 * 76.11260 * 15 4 2 17 17 C 1.51210 * 126.17752 * 219.61823 * 15 4 2 18 18 C 1.54094 * 106.19688 * 161.42540 * 17 15 4 19 19 C 1.52492 * 112.66752 * 304.56328 * 18 17 15 20 20 N 1.48404 * 111.87409 * 46.78812 * 19 18 17 21 21 C 1.36939 * 123.16806 * 128.12293 * 20 19 18 22 22 H 1.07996 * 120.00486 * 221.39048 * 21 20 19 23 23 C 1.38813 * 119.99962 * 41.38511 * 21 20 19 24 24 N 1.31621 * 120.00437 * 210.32828 * 23 21 20 25 25 Si 1.86802 * 119.99790 * 30.33532 * 23 21 20 26 26 H 1.48509 * 109.47231 * 84.68590 * 25 23 21 27 27 H 1.48499 * 109.47050 * 204.67769 * 25 23 21 28 28 H 1.48492 * 109.47232 * 324.68293 * 25 23 21 29 29 C 1.46252 * 112.70330 * 307.51910 * 20 19 18 30 30 H 1.08996 * 113.59152 * 301.28026 * 29 20 19 31 31 H 1.09001 * 109.47192 * 306.70748 * 1 2 3 32 32 H 1.09007 * 109.47674 * 66.70980 * 1 2 3 33 33 H 1.09000 * 109.47215 * 186.71411 * 1 2 3 34 34 H 1.09002 * 109.47074 * 199.16106 * 3 2 1 35 35 H 1.08995 * 109.47105 * 319.15991 * 3 2 1 36 36 H 1.08998 * 109.46689 * 79.16292 * 3 2 1 37 37 H 0.97003 * 119.99705 * 341.35230 * 6 4 2 38 38 H 1.08004 * 126.81323 * 0.02562 * 10 9 7 39 39 H 1.08998 * 110.09774 * 280.59629 * 17 15 4 40 40 H 1.09008 * 110.09631 * 42.25520 * 17 15 4 41 41 H 1.08998 * 108.83743 * 65.38629 * 18 17 15 42 42 H 1.09000 * 108.83890 * 183.84601 * 18 17 15 43 43 H 1.09001 * 109.00076 * 167.40228 * 19 18 17 44 44 H 1.09001 * 109.00161 * 286.24689 * 19 18 17 45 45 H 0.96995 * 120.00159 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1354 1.4051 0.0000 4 6 2.1657 -0.9662 1.0435 5 1 1.6250 -1.9036 1.1744 6 7 2.5265 -0.3257 2.3107 7 6 2.7257 -1.0760 3.4123 8 8 2.6065 -2.2850 3.3544 9 6 3.0877 -0.4323 4.6860 10 6 3.3223 -1.0473 5.8876 11 7 3.6147 -0.0782 6.7551 12 7 3.5755 1.0582 6.1562 13 7 3.2600 0.9075 4.9174 14 1 3.1650 1.6165 4.2623 15 6 3.2889 -1.0395 0.0521 16 1 3.9179 -0.1495 0.0677 17 6 4.0723 -2.2785 -0.3192 18 6 4.7556 -1.9678 -1.6649 19 6 3.7652 -1.5360 -2.7410 20 7 2.8113 -0.5166 -2.2377 21 6 2.5815 0.6736 -2.8747 22 1 2.4829 1.5831 -2.3008 23 6 2.4753 0.7111 -4.2583 24 7 2.8451 1.7884 -4.9178 25 14 1.8073 -0.7675 -5.1841 26 1 0.3235 -0.7100 -5.2043 27 1 2.3221 -0.7533 -6.5769 28 1 2.2452 -2.0145 -4.5072 29 6 2.1419 -0.9301 -1.0048 30 1 1.5797 -1.8586 -1.1040 31 1 -0.3633 0.6143 0.8239 32 1 -0.3635 0.4063 -0.9440 33 1 -0.3634 -1.0206 0.1201 34 1 3.1707 1.3546 -0.3373 35 1 1.5652 2.0464 -0.6720 36 1 2.1017 1.8152 1.0093 37 1 2.6218 0.6385 2.3569 38 1 3.2789 -2.1070 6.0915 39 1 4.8231 -2.4890 0.4424 40 1 3.3989 -3.1287 -0.4284 41 1 5.4824 -1.1695 -1.5146 42 1 5.2793 -2.8600 -2.0081 43 1 4.3164 -1.1203 -3.5845 44 1 3.2053 -2.4082 -3.0786 45 1 2.7712 1.8144 -5.8846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087294664.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:37 Heat of formation + Delta-G solvation = 130.605287 kcal Electronic energy + Delta-G solvation = -28144.696282 eV Core-core repulsion = 24394.880962 eV Total energy + Delta-G solvation = -3749.815321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.64301 -41.26873 -39.10377 -35.66280 -34.23734 -33.28871 -33.05554 -31.61810 -30.87758 -29.59700 -27.43497 -26.15609 -25.42555 -24.10417 -23.12877 -22.31435 -21.47767 -20.44875 -19.83097 -19.64862 -18.30406 -16.95970 -16.80603 -16.65597 -16.03783 -15.19688 -14.95497 -14.68099 -14.57545 -14.31885 -14.00151 -13.57098 -13.44560 -13.20811 -12.85591 -12.58623 -12.49873 -12.22423 -11.88967 -11.81175 -11.61250 -11.50955 -11.30255 -11.18416 -11.08174 -10.77240 -10.61487 -10.58716 -10.55272 -10.20817 -10.18351 -9.84260 -9.72843 -9.64520 -9.11605 -8.96945 -8.37338 -6.67681 -6.13615 -3.51521 0.59573 1.99990 2.11020 2.78974 2.85401 3.33705 3.44769 3.48997 4.02881 4.37753 4.43045 4.50996 4.65160 4.70441 4.84428 4.88105 4.99620 5.12818 5.38970 5.50440 5.55927 5.66979 5.69022 5.73227 5.79474 5.87627 5.88944 6.01927 6.14406 6.21904 6.22389 6.25153 6.30975 6.38440 6.42215 6.49880 6.51785 6.63475 6.76226 6.82600 6.84824 7.01988 7.21934 7.81608 7.91198 7.94011 8.33415 8.84647 9.61683 10.20931 11.01467 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.023067 B = 0.003595 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.587514 B = 7785.699820 C = 8150.751224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.063 4.063 3 C -0.119 4.119 4 C 0.140 3.860 5 H 0.117 0.883 6 N -0.705 5.705 7 C 0.592 3.408 8 O -0.515 6.515 9 C -0.061 4.061 10 C 0.030 3.970 11 N -0.271 5.271 12 N -0.049 5.049 13 N -0.375 5.375 14 H 0.451 0.549 15 C -0.166 4.166 16 H 0.098 0.902 17 C -0.088 4.088 18 C -0.131 4.131 19 C 0.138 3.862 20 N -0.578 5.578 21 C -0.269 4.269 22 H 0.086 0.914 23 C 0.048 3.952 24 N -0.887 5.887 25 Si 0.846 3.154 26 H -0.288 1.288 27 H -0.298 1.298 28 H -0.256 1.256 29 C 0.143 3.857 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.031 0.969 37 H 0.394 0.606 38 H 0.204 0.796 39 H 0.046 0.954 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.063 0.937 44 H 0.025 0.975 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.510 -3.250 14.714 15.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.064 4.064 3 C -0.176 4.176 4 C 0.036 3.964 5 H 0.135 0.865 6 N -0.356 5.356 7 C 0.375 3.625 8 O -0.388 6.388 9 C -0.196 4.196 10 C -0.130 4.130 11 N -0.136 5.136 12 N -0.031 5.031 13 N -0.102 5.102 14 H 0.298 0.702 15 C -0.187 4.187 16 H 0.116 0.884 17 C -0.126 4.126 18 C -0.170 4.170 19 C 0.013 3.987 20 N -0.301 5.301 21 C -0.396 4.396 22 H 0.103 0.897 23 C -0.155 4.155 24 N -0.526 5.526 25 Si 0.673 3.327 26 H -0.215 1.215 27 H -0.225 1.225 28 H -0.181 1.181 29 C 0.035 3.965 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.229 0.771 38 H 0.221 0.779 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.043 0.957 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.214 -3.084 15.613 15.916 hybrid contribution -0.714 -0.587 -2.071 2.268 sum -0.928 -3.671 13.542 14.061 Atomic orbital electron populations 1.21727 0.94211 1.01265 1.02001 1.21849 0.94897 0.95473 0.94164 1.21668 1.02907 0.93899 0.99113 1.22616 0.97673 0.97167 0.78919 0.86515 1.46015 1.69696 1.10167 1.09688 1.16788 0.77748 0.86714 0.81257 1.90870 1.51016 1.12677 1.84273 1.22568 1.13684 0.84167 0.99174 1.23915 1.00048 1.01506 0.87510 1.74996 1.17316 0.94737 1.26581 1.78231 1.15209 1.20115 0.89557 1.45624 1.45807 1.08012 1.10741 0.70213 1.23384 0.97749 0.99847 0.97731 0.88371 1.21113 0.98558 0.96685 0.96263 1.21957 0.99030 1.00033 0.95992 1.21411 0.90598 0.91870 0.94775 1.44294 1.40983 1.18067 1.26799 1.18744 1.47176 0.84554 0.89154 0.89704 1.25706 0.97248 0.95612 0.96920 1.69981 1.44767 1.30008 1.07844 0.87396 0.80344 0.86012 0.78916 1.21544 1.22525 1.18071 1.21757 0.92475 0.95067 0.87220 0.92516 0.93315 0.91455 0.92917 0.90408 0.90818 0.95000 0.77068 0.77897 0.93481 0.92543 0.92529 0.92936 0.91828 0.95671 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.21 37.15 0.34 -1.45 16 2 C -0.06 -0.89 1.37 -159.15 -0.22 -1.11 16 3 C -0.12 -1.67 6.87 37.16 0.26 -1.41 16 4 C 0.14 1.82 3.46 -71.84 -0.25 1.57 16 5 H 0.12 1.63 7.56 -51.93 -0.39 1.23 16 6 N -0.71 -7.41 5.33 -58.81 -0.31 -7.72 16 7 C 0.59 6.88 7.81 -12.61 -0.10 6.78 16 8 O -0.51 -7.66 16.59 5.26 0.09 -7.57 16 9 C -0.06 -0.61 7.17 -82.33 -0.59 -1.20 16 10 C 0.03 0.31 11.87 -17.36 -0.21 0.10 16 11 N -0.27 -3.20 12.35 30.47 0.38 -2.82 16 12 N -0.05 -0.53 13.35 60.35 0.81 0.28 16 13 N -0.37 -3.06 6.98 33.31 0.23 -2.82 16 14 H 0.45 2.07 8.32 -190.33 -1.58 0.48 16 15 C -0.17 -2.49 2.87 -95.82 -0.28 -2.76 16 16 H 0.10 1.58 6.06 -51.93 -0.31 1.26 16 17 C -0.09 -1.34 6.10 -27.06 -0.17 -1.51 16 18 C -0.13 -2.15 5.90 -26.42 -0.16 -2.30 16 19 C 0.14 2.75 4.47 -3.25 -0.01 2.74 16 20 N -0.58 -12.15 2.29 -168.76 -0.39 -12.53 16 21 C -0.27 -6.64 9.23 -15.06 -0.14 -6.78 16 22 H 0.09 2.18 5.34 -52.49 -0.28 1.90 16 23 C 0.05 1.27 5.05 -17.43 -0.09 1.18 16 24 N -0.89 -25.27 13.97 55.49 0.78 -24.50 16 25 Si 0.85 20.39 27.31 -169.99 -4.64 15.75 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 28 H -0.26 -5.85 4.81 56.52 0.27 -5.58 16 29 C 0.14 2.46 3.08 -71.66 -0.22 2.24 16 30 H 0.06 1.01 7.95 -51.93 -0.41 0.59 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 33 H 0.05 0.66 8.12 -51.93 -0.42 0.24 16 34 H 0.08 1.26 5.54 -51.93 -0.29 0.97 16 35 H 0.07 1.18 7.16 -51.93 -0.37 0.81 16 36 H 0.03 0.32 6.55 -51.93 -0.34 -0.02 16 37 H 0.39 3.17 6.00 -40.82 -0.24 2.93 16 38 H 0.20 1.68 8.06 -52.48 -0.42 1.26 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.85 8.00 -51.92 -0.42 0.43 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 1.38 7.13 -51.93 -0.37 1.01 16 44 H 0.03 0.52 6.47 -51.93 -0.34 0.18 16 45 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 348.88 15.07 5.26 5.26 Total: -1.00 -30.67 348.88 -7.20 -37.87 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -7.57 Total: 2.72 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -1.82 Total: -3.90 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: 1.49 Total: -50.12 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: 0.09 Total: -7.57 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.64 Total: 15.75 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.67 -7.20 -37.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087294664.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.474 kcal (2) G-P(sol) polarization free energy of solvation -30.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds