Wall clock time and date at job start Fri Apr 10 2020 18:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35675 * 117.00594 * 2 1 4 4 N 1.32278 * 119.68050 * 0.02562 * 3 2 1 5 5 C 1.31937 * 121.64774 * 179.97438 * 4 3 2 6 6 C 1.38091 * 120.83496 * 0.02562 * 5 4 3 7 7 C 1.38789 * 119.28259 * 359.68429 * 6 5 4 8 8 C 1.38421 * 118.48647 * 0.57837 * 7 6 5 9 9 C 1.50706 * 120.44303 * 179.71666 * 8 7 6 10 10 C 1.50702 * 109.46792 * 264.72378 * 9 8 7 11 11 O 1.21278 * 120.00423 * 359.97438 * 10 9 8 12 12 N 1.34774 * 119.99692 * 180.02562 * 10 9 8 13 13 C 1.47081 * 120.88114 * 0.02562 * 12 10 9 14 14 C 1.53235 * 108.52054 * 231.16282 * 13 12 10 15 15 N 1.46906 * 109.34079 * 306.16959 * 14 13 12 16 16 C 1.46898 * 110.99801 * 187.25100 * 15 14 13 17 17 C 1.50700 * 109.46835 * 170.00134 * 16 15 14 18 18 H 1.08001 * 120.00412 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00313 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99363 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00176 * 179.97438 * 19 17 16 22 22 H 1.48489 * 109.46983 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46698 * 120.00167 * 21 19 17 24 24 H 1.48495 * 109.46897 * 239.99961 * 21 19 17 25 25 C 1.46896 * 111.26658 * 63.10656 * 15 14 13 26 26 C 1.47082 * 120.88386 * 179.97438 * 12 10 9 27 27 H 1.09005 * 109.46893 * 300.00097 * 1 2 3 28 28 H 1.09001 * 109.46763 * 59.99549 * 1 2 3 29 29 H 1.08997 * 109.47274 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.58283 * 179.97438 * 5 4 3 31 31 H 1.07994 * 120.35951 * 179.97438 * 6 5 4 32 32 H 1.07998 * 120.75435 * 180.29424 * 7 6 5 33 33 H 1.09000 * 109.46807 * 144.72483 * 9 8 7 34 34 H 1.09000 * 109.46946 * 24.72229 * 9 8 7 35 35 H 1.09002 * 109.63012 * 111.45725 * 13 12 10 36 36 H 1.09000 * 109.63054 * 350.86988 * 13 12 10 37 37 H 1.08997 * 109.49554 * 186.21402 * 14 13 12 38 38 H 1.08997 * 109.49382 * 66.13002 * 14 13 12 39 39 H 1.08993 * 109.47768 * 290.00114 * 16 15 14 40 40 H 1.09004 * 109.47075 * 50.00431 * 16 15 14 41 41 H 0.97003 * 119.99498 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.49756 * 56.85119 * 25 15 14 43 43 H 1.08998 * 109.49494 * 176.90931 * 25 15 14 44 44 H 1.09001 * 109.62379 * 9.12792 * 26 12 10 45 45 H 1.08998 * 109.62760 * 248.54863 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2088 0.0000 4 7 1.3186 2.3142 0.0005 5 6 1.8770 3.5096 0.0010 6 6 3.2508 3.6491 0.0005 7 6 4.0485 2.5133 0.0061 8 6 3.4323 1.2738 -0.0002 9 6 4.2558 0.0116 -0.0009 10 6 4.4265 -0.4759 -1.4167 11 8 3.9281 0.1404 -2.3346 12 7 5.1321 -1.5975 -1.6626 13 6 5.7434 -2.3609 -0.5641 14 6 7.2197 -2.5986 -0.8990 15 7 7.3233 -3.2251 -2.2237 16 6 8.7073 -3.6261 -2.5095 17 6 8.7371 -4.4767 -3.7532 18 1 7.8197 -4.6976 -4.2785 19 6 9.9355 -4.9737 -4.2200 20 7 11.0525 -4.7059 -3.5795 21 14 9.9723 -6.0286 -5.7612 22 1 8.5930 -6.1813 -6.2895 23 1 10.8255 -5.3766 -6.7869 24 1 10.5280 -7.3659 -5.4324 25 6 6.8043 -2.3391 -3.2742 26 6 5.3105 -2.0912 -3.0366 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.2517 4.3902 0.0010 31 1 3.6998 4.6313 0.0006 32 1 5.1254 2.5947 0.0106 33 1 3.7494 -0.7529 0.5881 34 1 5.2344 0.2161 0.4334 35 1 5.2339 -3.3184 -0.4556 36 1 5.6651 -1.7941 0.3637 37 1 7.6613 -3.2561 -0.1502 38 1 7.7493 -1.6459 -0.9048 39 1 9.3190 -2.7371 -2.6627 40 1 9.1010 -4.1976 -1.6689 41 1 11.8956 -5.0558 -3.9077 42 1 7.3396 -1.3900 -3.2469 43 1 6.9450 -2.8082 -4.2479 44 1 4.9458 -1.3460 -3.7436 45 1 4.7593 -3.0228 -3.1653 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176240697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:45 Heat of formation + Delta-G solvation = -47.353310 kcal Electronic energy + Delta-G solvation = -26795.032912 eV Core-core repulsion = 23005.207976 eV Total energy + Delta-G solvation = -3789.824936 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.86067 -40.93371 -38.97729 -38.75788 -35.96553 -34.76789 -34.34708 -32.46461 -31.99073 -30.28104 -28.92109 -28.09694 -27.09321 -24.77050 -24.00021 -23.91970 -23.39866 -21.87097 -19.88651 -19.28626 -18.49749 -18.30375 -18.09640 -17.14727 -16.85942 -16.69327 -16.46412 -16.15875 -15.95682 -15.57735 -15.31830 -15.19597 -15.09867 -14.73064 -14.39484 -14.18631 -14.06197 -13.93994 -13.59157 -13.15955 -13.08644 -12.93620 -12.75487 -12.59188 -12.41941 -12.33122 -12.27874 -12.16857 -12.15325 -11.72440 -11.31537 -11.04252 -10.64083 -10.61980 -10.59397 -9.74933 -9.36451 -9.04142 -8.21403 -6.30767 0.14581 0.35514 1.41016 1.42126 1.55162 1.62841 1.99188 2.17903 2.40187 2.82208 3.11242 3.24196 3.34517 3.62624 3.79193 3.86966 4.02558 4.09481 4.10432 4.25169 4.25986 4.30733 4.41406 4.42403 4.44941 4.51856 4.55999 4.61473 4.74304 4.74528 4.83704 4.87453 4.93671 5.04538 5.10690 5.17752 5.24871 5.26935 5.47544 5.54048 5.64292 6.03667 6.21595 6.26269 6.45433 6.60598 6.85151 6.87689 7.15469 7.39055 8.89839 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.027769 B = 0.002514 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.069769 B =11133.228769 C =11390.530735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.322 6.322 3 C 0.310 3.690 4 N -0.561 5.561 5 C 0.124 3.876 6 C -0.205 4.205 7 C -0.040 4.040 8 C -0.153 4.153 9 C -0.081 4.081 10 C 0.518 3.482 11 O -0.585 6.585 12 N -0.612 5.612 13 C 0.119 3.881 14 C 0.035 3.965 15 N -0.541 5.541 16 C 0.209 3.791 17 C -0.523 4.523 18 H 0.063 0.937 19 C 0.003 3.997 20 N -0.934 5.934 21 Si 0.967 3.033 22 H -0.264 1.264 23 H -0.281 1.281 24 H -0.278 1.278 25 C 0.059 3.941 26 C 0.127 3.873 27 H 0.063 0.937 28 H 0.047 0.953 29 H 0.117 0.883 30 H 0.187 0.813 31 H 0.169 0.831 32 H 0.160 0.840 33 H 0.123 0.877 34 H 0.133 0.867 35 H 0.086 0.914 36 H 0.124 0.876 37 H 0.091 0.909 38 H 0.023 0.977 39 H -0.041 1.041 40 H 0.012 0.988 41 H 0.264 0.736 42 H 0.011 0.989 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.801 14.065 12.521 25.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.229 6.229 3 C 0.132 3.868 4 N -0.285 5.285 5 C -0.031 4.031 6 C -0.225 4.225 7 C -0.066 4.066 8 C -0.156 4.156 9 C -0.121 4.121 10 C 0.308 3.692 11 O -0.465 6.465 12 N -0.344 5.344 13 C -0.003 4.003 14 C -0.094 4.094 15 N -0.266 5.266 16 C 0.083 3.917 17 C -0.561 4.561 18 H 0.081 0.919 19 C -0.196 4.196 20 N -0.574 5.574 21 Si 0.792 3.208 22 H -0.188 1.188 23 H -0.207 1.207 24 H -0.203 1.203 25 C -0.070 4.070 26 C 0.004 3.996 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.135 0.865 30 H 0.204 0.796 31 H 0.186 0.814 32 H 0.178 0.822 33 H 0.141 0.859 34 H 0.151 0.849 35 H 0.104 0.896 36 H 0.142 0.858 37 H 0.109 0.891 38 H 0.042 0.958 39 H -0.023 1.023 40 H 0.030 0.970 41 H 0.073 0.927 42 H 0.029 0.971 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.992 13.566 12.052 26.268 hybrid contribution 1.728 0.215 -1.060 2.039 sum -17.264 13.781 10.992 24.673 Atomic orbital electron populations 1.22980 0.76186 1.04298 1.01989 1.86194 1.24089 1.24866 1.87738 1.19844 0.89416 0.85053 0.92510 1.67326 1.41464 0.99514 1.20227 1.22986 0.94050 0.93710 0.92311 1.22322 0.94589 1.00799 1.04769 1.21718 1.01913 0.90593 0.92339 1.19544 0.90860 0.96677 1.08561 1.20506 1.02656 0.95856 0.93069 1.21071 0.76836 0.79216 0.92111 1.90656 1.50213 1.57557 1.48058 1.48306 1.52304 1.25477 1.08357 1.22053 0.91288 0.97458 0.89482 1.22568 0.97097 0.97565 0.92129 1.61996 1.22683 1.40084 1.01813 1.19365 0.83346 0.93003 0.95971 1.21500 0.93350 1.30994 1.10257 0.91851 1.25876 0.95139 0.97860 1.00678 1.70081 0.98834 1.46870 1.41642 0.85369 0.78434 0.78253 0.78794 1.18758 1.20668 1.20334 1.22232 0.94226 0.93722 0.96787 1.21569 0.94909 0.99503 0.83636 0.91851 0.93425 0.86495 0.79601 0.81386 0.82224 0.85946 0.84878 0.89599 0.85771 0.89105 0.95836 1.02297 0.96961 0.92695 0.97098 0.90532 0.90058 0.90529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 10.38 113.37 1.18 1.92 16 2 O -0.32 -8.02 9.63 -89.92 -0.87 -8.88 16 3 C 0.31 7.89 7.47 84.78 0.63 8.52 16 4 N -0.56 -13.28 9.22 -308.94 -2.85 -16.13 16 5 C 0.12 2.18 11.18 84.64 0.95 3.12 16 6 C -0.20 -3.14 10.11 22.37 0.23 -2.91 16 7 C -0.04 -0.73 9.83 22.45 0.22 -0.51 16 8 C -0.15 -3.47 4.40 -19.67 -0.09 -3.56 16 9 C -0.08 -1.62 3.94 29.10 0.11 -1.50 16 10 C 0.52 14.89 7.70 87.66 0.68 15.56 16 11 O -0.58 -21.71 15.49 -3.02 -0.05 -21.75 16 12 N -0.61 -17.49 3.01 -817.85 -2.46 -19.95 16 13 C 0.12 2.78 6.50 86.35 0.56 3.34 16 14 C 0.04 1.11 5.62 86.38 0.49 1.59 16 15 N -0.54 -22.32 4.62 -899.75 -4.16 -26.48 16 16 C 0.21 10.84 4.72 85.56 0.40 11.24 16 17 C -0.52 -29.08 8.41 25.60 0.22 -28.86 16 18 H 0.06 3.47 7.13 -2.91 -0.02 3.45 16 19 C 0.00 0.14 5.46 84.66 0.46 0.61 16 20 N -0.93 -55.46 13.29 21.45 0.28 -55.17 16 21 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 22 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 25 C 0.06 2.33 5.46 86.40 0.47 2.80 16 26 C 0.13 4.20 6.60 86.36 0.57 4.77 16 27 H 0.06 1.05 8.10 -2.38 -0.02 1.03 16 28 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 29 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.19 1.91 8.06 -2.91 -0.02 1.88 16 31 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 32 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 33 H 0.12 2.08 7.56 -2.39 -0.02 2.06 16 34 H 0.13 1.81 7.58 -2.39 -0.02 1.79 16 35 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.12 1.84 6.02 -2.39 -0.01 1.83 16 37 H 0.09 2.69 7.99 -2.39 -0.02 2.68 16 38 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 39 H -0.04 -2.32 8.12 -2.39 -0.02 -2.34 16 40 H 0.01 0.68 7.97 -2.39 -0.02 0.66 16 41 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 42 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.08 3.26 6.67 -2.39 -0.02 3.25 16 44 H 0.08 2.79 7.06 -2.39 -0.02 2.77 16 45 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -76.04 369.39 -0.01 -76.05 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.98 Total: 10.25 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: 7.08 Total: 16.12 kcal Atomic # 7 Polarization: -108.56 SS G_CDS: -9.18 Total: -117.74 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.91 Total: -30.64 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -76.04 -0.01 -76.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176240697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.697 kcal (2) G-P(sol) polarization free energy of solvation -76.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds