Wall clock time and date at job start Fri Apr 10 2020 18:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21294 * 119.99537 * 2 1 4 4 N 1.34771 * 120.00309 * 180.02562 * 2 1 3 5 5 C 1.46500 * 120.00040 * 4.78082 * 4 2 1 6 6 C 1.50692 * 109.47375 * 274.79655 * 5 4 2 7 7 O 1.21283 * 120.00087 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00486 * 179.97438 * 6 5 4 9 9 C 1.46498 * 120.00304 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47017 * 179.97438 * 9 8 6 11 11 C 1.52995 * 109.47188 * 180.02562 * 10 9 8 12 12 N 1.46500 * 109.47376 * 179.97438 * 11 10 9 13 13 C 1.36936 * 120.00397 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99962 * 0.02562 * 13 12 11 15 15 C 1.38809 * 120.00362 * 180.02562 * 13 12 11 16 16 N 1.31622 * 120.00161 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00252 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46809 * 59.99972 * 17 15 13 19 19 H 1.48500 * 109.47261 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47127 * 300.00109 * 17 15 13 21 21 C 1.39925 * 120.00424 * 184.78505 * 4 2 1 22 22 C 1.38877 * 120.06546 * 352.66836 * 21 4 2 23 23 C 1.38109 * 119.92673 * 179.97438 * 22 21 4 24 24 C 1.38284 * 120.07122 * 359.97047 * 23 22 21 25 25 C 1.38281 * 120.13958 * 0.05397 * 24 23 22 26 26 C 1.38102 * 120.07177 * 359.94945 * 25 24 23 27 27 H 1.09004 * 109.46839 * 264.70719 * 1 2 3 28 28 H 1.08998 * 109.47332 * 24.70883 * 1 2 3 29 29 H 1.09005 * 109.47204 * 144.70739 * 1 2 3 30 30 H 1.09011 * 109.47167 * 34.79522 * 5 4 2 31 31 H 1.09001 * 109.47316 * 154.78938 * 5 4 2 32 32 H 0.97003 * 119.99569 * 359.97438 * 8 6 5 33 33 H 1.08995 * 109.47090 * 299.99797 * 9 8 6 34 34 H 1.09005 * 109.46914 * 60.00077 * 9 8 6 35 35 H 1.09011 * 109.47331 * 299.99986 * 10 9 8 36 36 H 1.08996 * 109.47375 * 59.99999 * 10 9 8 37 37 H 1.09000 * 109.47339 * 299.99987 * 11 10 9 38 38 H 1.09001 * 109.47190 * 60.00416 * 11 10 9 39 39 H 0.97002 * 120.00238 * 0.02562 * 12 11 10 40 40 H 0.96998 * 120.00388 * 180.02562 * 16 15 13 41 41 H 1.07999 * 120.03443 * 359.69839 * 22 21 4 42 42 H 1.08003 * 119.96196 * 179.97438 * 23 22 21 43 43 H 1.08000 * 119.92893 * 180.02562 * 24 23 22 44 44 H 1.08002 * 119.96274 * 179.97438 * 25 24 23 45 45 H 1.08006 * 120.03802 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.4523 -2.4336 -0.1068 6 6 0.9976 -2.8681 1.2626 7 8 1.2570 -2.1871 2.2321 8 7 0.3026 -4.0134 1.4101 9 6 -0.1390 -4.4360 2.7415 10 6 -0.9011 -5.7580 2.6303 11 6 -1.3628 -6.1990 4.0206 12 7 -2.0931 -7.4646 3.9141 13 6 -2.6046 -8.0567 5.0378 14 1 -2.4699 -7.5906 6.0028 15 6 -3.2961 -9.2561 4.9369 16 7 -3.4597 -9.8245 3.7611 17 14 -3.9944 -10.0635 6.4699 18 1 -4.9646 -9.1433 7.1158 19 1 -4.6831 -11.3246 6.0952 20 1 -2.8911 -10.3641 7.4174 21 6 3.5765 -1.1693 0.1006 22 6 4.2798 0.0271 0.0482 23 6 5.6572 0.0217 0.1488 24 6 6.3360 -1.1733 0.3021 25 6 5.6387 -2.3663 0.3540 26 6 4.2613 -2.3676 0.2540 27 1 -0.3633 -0.0948 1.0233 28 1 -0.3634 0.9335 -0.4296 29 1 -0.3634 -0.8388 -0.5938 30 1 0.5843 -2.3004 -0.7526 31 1 2.1070 -3.1950 -0.5309 32 1 0.0948 -4.5579 0.6347 33 1 0.7292 -4.5699 3.3867 34 1 -0.7932 -3.6745 3.1660 35 1 -1.7694 -5.6237 1.9851 36 1 -0.2473 -6.5197 2.2056 37 1 -0.4949 -6.3333 4.6661 38 1 -2.0169 -5.4372 4.4449 39 1 -2.2137 -7.8835 3.0475 40 1 -3.9433 -10.6624 3.6905 41 1 3.7504 0.9603 -0.0755 42 1 6.2047 0.9517 0.1078 43 1 7.4131 -1.1748 0.3809 44 1 6.1718 -3.2979 0.4734 45 1 3.7172 -3.2997 0.2950 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176707295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:51 Heat of formation + Delta-G solvation = -12.272360 kcal Electronic energy + Delta-G solvation = -25772.619991 eV Core-core repulsion = 21984.316280 eV Total energy + Delta-G solvation = -3788.303712 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.45479 -39.64351 -38.59147 -36.39892 -35.73419 -34.46808 -32.18958 -31.62109 -31.07998 -30.06038 -29.06534 -27.97442 -25.16795 -23.34938 -22.80065 -22.34201 -21.38149 -20.89400 -19.90859 -18.04009 -17.79055 -17.61282 -16.99138 -16.41829 -15.93704 -15.79469 -15.52949 -15.02492 -14.61911 -14.60720 -14.35354 -13.96188 -13.90064 -13.56834 -13.34338 -13.32226 -13.08136 -13.03250 -12.72805 -12.54650 -12.25972 -11.99521 -11.74611 -11.39849 -11.10636 -10.98785 -10.97431 -10.83891 -10.68830 -10.18193 -9.99816 -9.74850 -9.61317 -9.26056 -9.11202 -8.92479 -8.21789 -6.99130 -5.81958 -3.11212 1.05985 1.24818 2.06046 2.26138 2.32960 2.97440 3.41515 3.45784 3.46856 3.66703 4.00181 4.25686 4.38812 4.44061 4.54568 4.73236 4.76639 4.79746 5.00334 5.01713 5.05568 5.18905 5.20192 5.24109 5.36726 5.44719 5.51364 5.52306 5.84622 5.85760 5.95432 5.96312 6.09802 6.19552 6.24114 6.25455 6.29074 6.40587 6.70875 6.75019 6.82326 6.93374 7.21977 7.65202 7.65787 7.90774 8.36967 9.48128 10.04408 10.38971 11.40868 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.023063 B = 0.002008 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.782271 B =13937.617242 C =14656.127641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.524 3.476 3 O -0.517 6.517 4 N -0.534 5.534 5 C 0.076 3.924 6 C 0.488 3.512 7 O -0.523 6.523 8 N -0.723 5.723 9 C 0.123 3.877 10 C -0.137 4.137 11 C 0.156 3.844 12 N -0.734 5.734 13 C -0.242 4.242 14 H 0.071 0.929 15 C -0.014 4.014 16 N -0.935 5.935 17 Si 0.909 3.091 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.285 1.285 21 C 0.157 3.843 22 C -0.167 4.167 23 C -0.099 4.099 24 C -0.147 4.147 25 C -0.096 4.096 26 C -0.159 4.159 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.402 0.598 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.021 0.979 38 H 0.022 0.978 39 H 0.384 0.616 40 H 0.256 0.744 41 H 0.181 0.819 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.124 0.876 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.057 18.053 -14.490 27.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.316 3.684 3 O -0.394 6.394 4 N -0.256 5.256 5 C -0.050 4.050 6 C 0.271 3.729 7 O -0.398 6.398 8 N -0.375 5.375 9 C -0.001 4.001 10 C -0.176 4.176 11 C 0.028 3.972 12 N -0.378 5.378 13 C -0.373 4.373 14 H 0.089 0.911 15 C -0.210 4.210 16 N -0.583 5.583 17 Si 0.740 3.260 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.212 1.212 21 C 0.063 3.937 22 C -0.186 4.186 23 C -0.118 4.118 24 C -0.166 4.166 25 C -0.114 4.114 26 C -0.179 4.179 27 H 0.121 0.879 28 H 0.118 0.882 29 H 0.102 0.898 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.237 0.763 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.217 0.783 40 H 0.066 0.934 41 H 0.197 0.803 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.142 0.858 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 14.407 19.089 -13.605 27.515 hybrid contribution -0.576 -1.330 0.311 1.482 sum 13.832 17.759 -13.294 26.143 Atomic orbital electron populations 1.22045 0.90503 1.05387 1.05621 1.20965 0.90976 0.82184 0.74252 1.90368 1.68888 1.31452 1.48688 1.45074 1.04847 1.06426 1.69225 1.21751 0.99563 0.87532 0.96190 1.20944 0.78887 0.81644 0.91422 1.90785 1.54984 1.53581 1.40470 1.46057 1.56347 1.23813 1.11324 1.21400 0.99066 0.96685 0.82944 1.21947 0.99973 0.95136 1.00497 1.20516 0.94725 0.89382 0.92587 1.42321 1.65302 1.22226 1.07941 1.19194 1.27677 1.02727 0.87690 0.91146 1.24758 1.01370 0.98029 0.96855 1.69644 1.46801 1.19825 1.22046 0.86236 0.78835 0.78658 0.82274 1.21203 1.21644 1.21197 1.17977 0.81346 0.94963 0.99369 1.22691 0.94545 0.99864 1.01474 1.21180 0.94092 0.97984 0.98519 1.21151 0.99903 0.92756 1.02830 1.20893 0.93254 0.98320 0.98974 1.20787 0.94981 0.96212 1.05914 0.87880 0.88196 0.89772 0.86102 0.86060 0.76334 0.91235 0.91202 0.91197 0.91219 0.96073 0.96064 0.78297 0.93420 0.80296 0.85883 0.86239 0.85780 0.86123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.22 9.52 36.01 0.34 -0.88 16 2 C 0.52 5.60 7.57 -10.99 -0.08 5.52 16 3 O -0.52 -6.99 13.51 5.55 0.07 -6.91 16 4 N -0.53 -5.32 2.24 -114.74 -0.26 -5.58 16 5 C 0.08 0.50 5.06 -5.20 -0.03 0.47 16 6 C 0.49 4.83 7.67 -10.99 -0.08 4.74 16 7 O -0.52 -7.71 16.33 5.56 0.09 -7.62 16 8 N -0.72 -6.34 5.56 -60.30 -0.33 -6.67 16 9 C 0.12 1.45 5.67 -4.04 -0.02 1.43 16 10 C -0.14 -1.88 5.44 -26.73 -0.15 -2.02 16 11 C 0.16 2.96 6.26 -4.04 -0.03 2.94 16 12 N -0.73 -18.10 5.60 -59.91 -0.34 -18.44 16 13 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 14 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 15 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 16 N -0.93 -27.79 13.06 55.49 0.72 -27.06 16 17 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 C 0.16 1.81 6.49 -83.69 -0.54 1.26 16 22 C -0.17 -2.00 9.04 -39.39 -0.36 -2.36 16 23 C -0.10 -1.01 10.04 -39.61 -0.40 -1.41 16 24 C -0.15 -1.37 10.04 -39.55 -0.40 -1.76 16 25 C -0.10 -0.90 10.04 -39.62 -0.40 -1.29 16 26 C -0.16 -1.61 9.16 -39.40 -0.36 -1.97 16 27 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.34 6.09 -51.93 -0.32 0.03 16 30 H 0.12 0.37 6.16 -51.92 -0.32 0.05 16 31 H 0.12 0.54 6.27 -51.93 -0.33 0.21 16 32 H 0.40 2.31 8.47 -40.82 -0.35 1.97 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.38 9.80 7.67 -40.82 -0.31 9.49 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.18 2.37 4.55 -56.14 -0.26 2.11 16 42 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 43 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 44 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 45 H 0.12 1.01 6.26 -52.48 -0.33 0.68 16 LS Contribution 375.58 15.07 5.66 5.66 Total: -1.00 -36.24 375.58 -8.55 -44.79 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -6.40 Total: 7.38 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -2.74 Total: -2.69 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: -0.20 Total: -57.75 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: 0.17 Total: -14.53 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.24 -8.55 -44.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176707295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.514 kcal (2) G-P(sol) polarization free energy of solvation -36.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds