Wall clock time and date at job start Fri Apr 10 2020 18:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21294 * 119.99537 * 2 1 4 4 N 1.34771 * 120.00309 * 180.02562 * 2 1 3 5 5 C 1.46500 * 120.00040 * 4.78082 * 4 2 1 6 6 C 1.50692 * 109.47375 * 274.79655 * 5 4 2 7 7 O 1.21283 * 120.00087 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00486 * 179.97438 * 6 5 4 9 9 C 1.46498 * 120.00304 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47017 * 179.97438 * 9 8 6 11 11 C 1.52995 * 109.47188 * 180.02562 * 10 9 8 12 12 N 1.46500 * 109.47376 * 179.97438 * 11 10 9 13 13 C 1.36936 * 120.00397 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99962 * 0.02562 * 13 12 11 15 15 C 1.38809 * 120.00362 * 180.02562 * 13 12 11 16 16 N 1.31622 * 120.00161 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00252 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46809 * 59.99972 * 17 15 13 19 19 H 1.48500 * 109.47261 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47127 * 300.00109 * 17 15 13 21 21 C 1.39925 * 120.00424 * 184.78505 * 4 2 1 22 22 C 1.38877 * 120.06546 * 352.66836 * 21 4 2 23 23 C 1.38109 * 119.92673 * 179.97438 * 22 21 4 24 24 C 1.38284 * 120.07122 * 359.97047 * 23 22 21 25 25 C 1.38281 * 120.13958 * 0.05397 * 24 23 22 26 26 C 1.38102 * 120.07177 * 359.94945 * 25 24 23 27 27 H 1.09004 * 109.46839 * 264.70719 * 1 2 3 28 28 H 1.08998 * 109.47332 * 24.70883 * 1 2 3 29 29 H 1.09005 * 109.47204 * 144.70739 * 1 2 3 30 30 H 1.09011 * 109.47167 * 34.79522 * 5 4 2 31 31 H 1.09001 * 109.47316 * 154.78938 * 5 4 2 32 32 H 0.97003 * 119.99569 * 359.97438 * 8 6 5 33 33 H 1.08995 * 109.47090 * 299.99797 * 9 8 6 34 34 H 1.09005 * 109.46914 * 60.00077 * 9 8 6 35 35 H 1.09011 * 109.47331 * 299.99986 * 10 9 8 36 36 H 1.08996 * 109.47375 * 59.99999 * 10 9 8 37 37 H 1.09000 * 109.47339 * 299.99987 * 11 10 9 38 38 H 1.09001 * 109.47190 * 60.00416 * 11 10 9 39 39 H 0.97002 * 120.00238 * 0.02562 * 12 11 10 40 40 H 0.96998 * 120.00388 * 180.02562 * 16 15 13 41 41 H 1.07999 * 120.03443 * 359.69839 * 22 21 4 42 42 H 1.08003 * 119.96196 * 179.97438 * 23 22 21 43 43 H 1.08000 * 119.92893 * 180.02562 * 24 23 22 44 44 H 1.08002 * 119.96274 * 179.97438 * 25 24 23 45 45 H 1.08006 * 120.03802 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.4523 -2.4336 -0.1068 6 6 0.9976 -2.8681 1.2626 7 8 1.2570 -2.1871 2.2321 8 7 0.3026 -4.0134 1.4101 9 6 -0.1390 -4.4360 2.7415 10 6 -0.9011 -5.7580 2.6303 11 6 -1.3628 -6.1990 4.0206 12 7 -2.0931 -7.4646 3.9141 13 6 -2.6046 -8.0567 5.0378 14 1 -2.4699 -7.5906 6.0028 15 6 -3.2961 -9.2561 4.9369 16 7 -3.4597 -9.8245 3.7611 17 14 -3.9944 -10.0635 6.4699 18 1 -4.9646 -9.1433 7.1158 19 1 -4.6831 -11.3246 6.0952 20 1 -2.8911 -10.3641 7.4174 21 6 3.5765 -1.1693 0.1006 22 6 4.2798 0.0271 0.0482 23 6 5.6572 0.0217 0.1488 24 6 6.3360 -1.1733 0.3021 25 6 5.6387 -2.3663 0.3540 26 6 4.2613 -2.3676 0.2540 27 1 -0.3633 -0.0948 1.0233 28 1 -0.3634 0.9335 -0.4296 29 1 -0.3634 -0.8388 -0.5938 30 1 0.5843 -2.3004 -0.7526 31 1 2.1070 -3.1950 -0.5309 32 1 0.0948 -4.5579 0.6347 33 1 0.7292 -4.5699 3.3867 34 1 -0.7932 -3.6745 3.1660 35 1 -1.7694 -5.6237 1.9851 36 1 -0.2473 -6.5197 2.2056 37 1 -0.4949 -6.3333 4.6661 38 1 -2.0169 -5.4372 4.4449 39 1 -2.2137 -7.8835 3.0475 40 1 -3.9433 -10.6624 3.6905 41 1 3.7504 0.9603 -0.0755 42 1 6.2047 0.9517 0.1078 43 1 7.4131 -1.1748 0.3809 44 1 6.1718 -3.2979 0.4734 45 1 3.7172 -3.2997 0.2950 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176707295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:50 Heat of formation + Delta-G solvation = -37.629826 kcal Electronic energy + Delta-G solvation = -25773.719574 eV Core-core repulsion = 21984.316280 eV Total energy + Delta-G solvation = -3789.403294 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.19566 -40.48985 -39.34722 -37.58538 -36.68136 -35.87439 -33.78899 -32.36848 -31.82182 -31.47427 -29.86297 -28.80059 -26.70961 -24.48757 -23.98445 -23.15389 -22.56661 -21.85171 -20.67449 -19.22861 -18.73155 -18.37986 -18.33889 -17.22327 -16.90322 -16.73563 -16.51330 -16.19006 -15.91086 -15.42554 -15.29096 -15.22592 -15.04974 -14.65408 -14.53702 -14.28383 -14.02471 -13.96404 -13.49968 -13.29830 -13.25113 -12.97748 -12.78865 -12.62328 -12.59767 -12.41749 -12.11311 -12.08964 -12.01939 -11.85104 -11.78230 -10.93327 -10.85608 -10.41002 -10.12772 -9.87735 -9.01196 -8.97432 -7.96466 -5.25232 0.30344 0.47783 1.31770 1.48290 1.50690 1.51784 1.56895 1.65383 2.20907 2.56572 2.91247 3.37284 3.37597 3.68377 3.78972 3.82748 3.90718 4.10662 4.11604 4.14704 4.28542 4.31606 4.36985 4.46004 4.49694 4.54000 4.55694 4.66213 4.74824 4.76323 4.89674 4.92562 5.14414 5.25442 5.29487 5.33919 5.41146 5.46719 5.49064 5.55605 5.65191 6.10671 6.17969 6.26585 6.52799 6.90142 7.19661 7.33255 8.08364 8.31998 9.26558 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.023063 B = 0.002008 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.782271 B =13937.617242 C =14656.127641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.511 3.489 3 O -0.556 6.556 4 N -0.536 5.536 5 C 0.077 3.923 6 C 0.491 3.509 7 O -0.576 6.576 8 N -0.708 5.708 9 C 0.135 3.865 10 C -0.117 4.117 11 C 0.150 3.850 12 N -0.746 5.746 13 C -0.250 4.250 14 H 0.073 0.927 15 C -0.074 4.074 16 N -0.967 5.967 17 Si 0.973 3.027 18 H -0.278 1.278 19 H -0.293 1.293 20 H -0.279 1.279 21 C 0.138 3.862 22 C -0.196 4.196 23 C -0.108 4.108 24 C -0.152 4.152 25 C -0.100 4.100 26 C -0.166 4.166 27 H 0.094 0.906 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.164 0.836 31 H 0.149 0.851 32 H 0.421 0.579 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.018 0.982 38 H 0.020 0.980 39 H 0.377 0.623 40 H 0.253 0.747 41 H 0.163 0.837 42 H 0.136 0.864 43 H 0.143 0.857 44 H 0.148 0.852 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.262 17.306 -15.298 27.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.304 3.696 3 O -0.436 6.436 4 N -0.256 5.256 5 C -0.048 4.048 6 C 0.277 3.723 7 O -0.454 6.454 8 N -0.361 5.361 9 C 0.010 3.990 10 C -0.155 4.155 11 C 0.023 3.977 12 N -0.389 5.389 13 C -0.382 4.382 14 H 0.091 0.909 15 C -0.267 4.267 16 N -0.617 5.617 17 Si 0.802 3.198 18 H -0.204 1.204 19 H -0.219 1.219 20 H -0.205 1.205 21 C 0.044 3.956 22 C -0.215 4.215 23 C -0.127 4.127 24 C -0.170 4.170 25 C -0.119 4.119 26 C -0.187 4.187 27 H 0.113 0.887 28 H 0.126 0.874 29 H 0.137 0.863 30 H 0.181 0.819 31 H 0.167 0.833 32 H 0.259 0.741 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.036 0.964 38 H 0.038 0.962 39 H 0.209 0.791 40 H 0.061 0.939 41 H 0.179 0.821 42 H 0.154 0.846 43 H 0.161 0.839 44 H 0.166 0.834 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 14.616 18.335 -14.436 27.535 hybrid contribution -0.572 -1.052 0.582 1.331 sum 14.044 17.282 -13.854 26.227 Atomic orbital electron populations 1.22076 0.87645 1.07437 1.05725 1.21726 0.92452 0.81935 0.73454 1.90360 1.69947 1.32911 1.50416 1.45224 1.04536 1.07393 1.68481 1.22077 1.01443 0.86820 0.94497 1.21491 0.77815 0.80914 0.92123 1.90779 1.57012 1.55156 1.42494 1.45826 1.55714 1.23803 1.10789 1.21050 0.98149 0.95393 0.84418 1.21694 1.00545 0.96036 0.97268 1.20693 0.93900 0.87129 0.95961 1.42523 1.65700 1.23851 1.06855 1.19589 1.27022 1.02849 0.88765 0.90906 1.25560 1.02449 0.98941 0.99701 1.69784 1.47940 1.20102 1.23883 0.85225 0.78190 0.77438 0.78989 1.20448 1.21946 1.20487 1.18227 0.82375 0.95243 0.99771 1.22701 0.95573 0.99848 1.03367 1.21419 0.93672 0.99275 0.98309 1.21470 1.01191 0.92348 1.02023 1.21283 0.93275 0.99364 0.97937 1.21057 0.95558 0.96363 1.05678 0.88742 0.87368 0.86348 0.81855 0.83313 0.74126 0.92492 0.91979 0.90263 0.90548 0.96381 0.96175 0.79112 0.93872 0.82063 0.84566 0.83878 0.83393 0.84351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 9.52 71.24 0.68 -1.41 16 2 C 0.51 10.82 7.57 87.66 0.66 11.49 16 3 O -0.56 -15.85 13.51 -3.07 -0.04 -15.89 16 4 N -0.54 -10.10 2.24 -635.30 -1.42 -11.52 16 5 C 0.08 0.77 5.06 85.63 0.43 1.20 16 6 C 0.49 8.63 7.67 87.65 0.67 9.30 16 7 O -0.58 -16.58 16.33 -3.04 -0.05 -16.63 16 8 N -0.71 -10.41 5.56 -463.07 -2.57 -12.98 16 9 C 0.13 2.95 5.67 86.38 0.49 3.44 16 10 C -0.12 -2.99 5.44 30.59 0.17 -2.82 16 11 C 0.15 5.57 6.26 86.38 0.54 6.11 16 12 N -0.75 -36.50 5.60 -343.46 -1.92 -38.42 16 13 C -0.25 -13.80 9.99 84.03 0.84 -12.96 16 14 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 15 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 16 N -0.97 -57.56 13.06 21.65 0.28 -57.28 16 17 Si 0.97 45.33 29.55 68.60 2.03 47.36 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 C 0.14 3.12 6.49 38.15 0.25 3.37 16 22 C -0.20 -4.90 9.04 22.39 0.20 -4.69 16 23 C -0.11 -2.22 10.04 22.25 0.22 -1.99 16 24 C -0.15 -2.62 10.04 22.29 0.22 -2.39 16 25 C -0.10 -1.69 10.04 22.25 0.22 -1.47 16 26 C -0.17 -3.11 9.16 22.39 0.20 -2.90 16 27 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 28 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.12 0.55 6.09 -2.38 -0.01 0.53 16 30 H 0.16 0.23 6.16 -2.38 -0.01 0.21 16 31 H 0.15 0.72 6.27 -2.39 -0.01 0.70 16 32 H 0.42 3.18 8.47 -92.71 -0.79 2.40 16 33 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 36 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.38 19.15 7.67 -92.71 -0.71 18.44 16 40 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 41 H 0.16 4.64 4.55 -60.83 -0.28 4.36 16 42 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 43 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 44 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 45 H 0.14 1.95 6.26 -2.91 -0.02 1.93 16 Total: -1.00 -80.99 375.58 1.84 -79.14 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: -0.73 Total: 25.66 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 6.28 Total: 0.56 kcal Atomic # 7 Polarization: -114.56 SS G_CDS: -5.63 Total: -120.20 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -0.09 Total: -32.52 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -80.99 1.84 -79.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176707295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.513 kcal (2) G-P(sol) polarization free energy of solvation -80.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds