Wall clock time and date at job start Fri Apr 10 2020 18:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36934 * 119.99533 * 2 1 4 4 H 1.08005 * 119.99658 * 203.24458 * 3 2 1 5 5 C 1.38812 * 120.00238 * 23.25240 * 3 2 1 6 6 N 1.31620 * 119.99962 * 13.75666 * 5 3 2 7 7 Si 1.86795 * 119.99862 * 193.75484 * 5 3 2 8 8 H 1.48500 * 109.47283 * 90.00129 * 7 5 3 9 9 H 1.48505 * 109.47262 * 209.99694 * 7 5 3 10 10 H 1.48506 * 109.47410 * 329.99851 * 7 5 3 11 11 C 1.46499 * 120.00055 * 180.02562 * 2 1 3 12 12 H 1.08996 * 110.88847 * 183.87821 * 11 2 1 13 13 C 1.55157 * 111.00499 * 59.99913 * 11 2 1 14 14 C 1.54327 * 102.94409 * 206.38636 * 13 11 2 15 15 N 1.47029 * 107.26756 * 22.19155 * 14 13 11 16 16 C 1.34776 * 125.64244 * 181.02446 * 15 14 13 17 17 O 1.21279 * 119.99533 * 180.02562 * 16 15 14 18 18 C 1.50701 * 120.00419 * 0.02562 * 16 15 14 19 19 O 1.42897 * 109.46977 * 180.02562 * 18 16 15 20 20 C 1.42904 * 113.99848 * 180.02562 * 19 18 16 21 21 C 1.50697 * 109.46984 * 179.97438 * 20 19 18 22 22 C 1.38675 * 120.41437 * 90.00162 * 21 20 19 23 23 C 1.38633 * 118.42197 * 179.97438 * 22 21 20 24 24 C 1.38230 * 119.15516 * 0.02562 * 23 22 21 25 25 N 1.31858 * 120.76829 * 0.02562 * 24 23 22 26 26 C 1.31884 * 121.71923 * 359.69819 * 25 24 23 27 27 C 1.47421 * 108.70454 * 1.28907 * 15 14 13 28 28 H 1.08997 * 109.46863 * 275.15672 * 1 2 3 29 29 H 1.09001 * 109.47231 * 35.15836 * 1 2 3 30 30 H 1.09005 * 109.46874 * 155.15711 * 1 2 3 31 31 H 0.97000 * 119.99826 * 180.02562 * 6 5 3 32 32 H 1.08997 * 110.72282 * 88.01881 * 13 11 2 33 33 H 1.09001 * 110.87346 * 324.82015 * 13 11 2 34 34 H 1.08998 * 109.88307 * 262.77577 * 14 13 11 35 35 H 1.08997 * 110.01042 * 141.67864 * 14 13 11 36 36 H 1.09003 * 109.46359 * 60.00057 * 18 16 15 37 37 H 1.08993 * 109.47018 * 300.00106 * 18 16 15 38 38 H 1.08997 * 109.46510 * 300.00064 * 20 19 18 39 39 H 1.08998 * 109.46649 * 60.00002 * 20 19 18 40 40 H 1.07998 * 120.79396 * 359.97438 * 22 21 20 41 41 H 1.08000 * 120.42203 * 180.02562 * 23 22 21 42 42 H 1.08000 * 119.61375 * 179.97438 * 24 23 22 43 43 H 1.08004 * 119.61189 * 180.31262 * 26 25 24 44 44 H 1.09002 * 110.36667 * 94.47956 * 27 15 14 45 45 H 1.08997 * 110.36522 * 216.80516 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1639 1.2239 -0.3692 5 6 1.5401 2.3392 0.4746 6 7 0.4239 2.2564 1.1672 7 14 2.3040 4.0087 0.1303 8 1 1.7648 4.5464 -1.1447 9 1 1.9761 4.9412 1.2386 10 1 3.7783 3.8660 0.0233 11 6 2.1976 -1.2687 -0.0006 12 1 3.2717 -1.0973 0.0684 13 6 1.8484 -2.1119 -1.2553 14 6 2.1074 -3.5581 -0.7830 15 7 2.0280 -3.5586 0.6852 16 6 2.2156 -4.6296 1.4815 17 8 2.1250 -4.5133 2.6853 18 6 2.5380 -5.9715 0.8762 19 8 2.6894 -6.9393 1.9166 20 6 2.9989 -8.2532 1.4476 21 6 3.1361 -9.1866 2.6227 22 6 2.0327 -9.8736 3.1061 23 6 2.2060 -10.7221 4.1888 24 6 3.4639 -10.8536 4.7466 25 7 4.4906 -10.1836 4.2612 26 6 4.3636 -9.3721 3.2293 27 6 1.7030 -2.1949 1.1414 28 1 -0.3633 0.0924 1.0235 29 1 -0.3634 0.8402 -0.5918 30 1 -0.3633 -0.9326 -0.4318 31 1 -0.0022 3.0624 1.4985 32 1 2.5038 -1.8548 -2.0874 33 1 0.8032 -1.9787 -1.5343 34 1 3.0991 -3.8799 -1.1007 35 1 1.3512 -4.2262 -1.1953 36 1 3.4654 -5.9002 0.3079 37 1 1.7279 -6.2750 0.2132 38 1 2.1988 -8.6041 0.7958 39 1 3.9362 -8.2291 0.8918 40 1 1.0615 -9.7507 2.6502 41 1 1.3689 -11.2732 4.5911 42 1 3.6072 -11.5122 5.5905 43 1 5.2286 -8.8439 2.8562 44 1 0.6273 -2.0879 1.2808 45 1 2.2309 -1.9691 2.0679 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193736320.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:27 Heat of formation + Delta-G solvation = -6.324198 kcal Electronic energy + Delta-G solvation = -25852.239228 eV Core-core repulsion = 22064.193448 eV Total energy + Delta-G solvation = -3788.045780 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.52226 -39.84804 -38.13037 -37.05320 -34.83447 -33.27435 -32.11026 -31.74086 -29.92104 -28.99593 -27.42711 -26.18314 -26.00075 -23.90842 -23.37523 -22.39353 -22.32705 -19.42034 -19.19724 -17.61356 -17.20002 -17.14452 -16.96026 -16.59803 -16.18139 -15.72010 -15.54059 -14.93427 -14.57305 -14.10040 -14.06187 -13.83390 -13.42119 -13.39842 -13.28935 -12.88915 -12.69199 -12.48372 -12.40455 -12.09601 -11.95249 -11.71243 -11.52319 -10.93575 -10.83903 -10.53416 -10.52157 -10.31108 -10.18677 -10.07078 -9.92762 -9.87188 -9.76092 -9.62095 -9.38619 -8.62951 -8.36803 -6.84146 -5.79353 -3.27655 0.68214 0.94363 2.74723 2.75538 3.35276 3.41150 3.43243 3.44347 3.86278 4.14643 4.40678 4.40760 4.44939 4.60879 4.61857 4.68148 4.87114 4.93276 4.94432 4.99218 5.02516 5.22866 5.27014 5.28748 5.42148 5.43601 5.57181 5.74589 5.74940 5.84420 5.88858 5.96178 6.27137 6.33261 6.33711 6.44751 6.56987 6.71008 6.77971 6.84498 7.28690 7.63119 7.66467 7.73438 7.75045 8.30915 8.35591 9.15089 9.77368 10.26116 11.24916 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.031347 B = 0.002027 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.016523 B =13812.160386 C =14018.606062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.584 5.584 3 C -0.262 4.262 4 H 0.071 0.929 5 C 0.005 3.995 6 N -0.903 5.903 7 Si 0.908 3.092 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.154 4.154 14 C 0.101 3.899 15 N -0.614 5.614 16 C 0.524 3.476 17 O -0.524 6.524 18 C 0.050 3.950 19 O -0.357 6.357 20 C 0.105 3.895 21 C -0.141 4.141 22 C -0.053 4.053 23 C -0.176 4.176 24 C 0.102 3.898 25 N -0.488 5.488 26 C 0.122 3.878 27 C 0.089 3.911 28 H 0.034 0.966 29 H 0.042 0.958 30 H 0.002 0.998 31 H 0.254 0.746 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.157 0.843 43 H 0.157 0.843 44 H 0.069 0.931 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.063 -25.125 -3.611 25.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.304 5.304 3 C -0.392 4.392 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.546 5.546 7 Si 0.738 3.262 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.194 4.194 14 C -0.022 4.022 15 N -0.351 5.351 16 C 0.310 3.690 17 O -0.400 6.400 18 C -0.030 4.030 19 O -0.275 6.275 20 C 0.028 3.972 21 C -0.143 4.143 22 C -0.079 4.079 23 C -0.196 4.196 24 C -0.055 4.055 25 N -0.196 5.196 26 C -0.035 4.035 27 C -0.035 4.035 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.021 0.979 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.154 0.846 41 H 0.155 0.845 42 H 0.174 0.826 43 H 0.174 0.826 44 H 0.087 0.913 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.709 -25.009 -2.227 25.380 hybrid contribution -0.639 0.957 -0.829 1.418 sum 3.070 -24.052 -3.056 24.439 Atomic orbital electron populations 1.20821 0.82454 0.95601 0.99738 1.43863 1.01885 0.99864 1.84816 1.19214 0.98809 0.85156 1.36008 0.91153 1.25080 0.97964 0.98749 0.97633 1.70072 1.19943 1.27491 1.37142 0.86209 0.78767 0.83850 0.77405 1.21422 1.21706 1.20396 1.21506 0.96426 0.85711 0.90118 0.90287 1.23221 1.02922 0.92566 1.00664 1.22078 1.00618 0.99423 0.80103 1.48475 1.69620 1.09591 1.07371 1.19759 0.78040 0.84407 0.86748 1.90741 1.50374 1.84632 1.14206 1.22211 1.01963 0.88231 0.90621 1.88107 1.91707 1.16708 1.30985 1.21256 1.00578 0.82165 0.93201 1.20571 0.95134 0.99004 0.99557 1.21550 0.98547 0.93234 0.94547 1.22169 0.99210 1.00561 0.97670 1.22852 0.88465 0.96062 0.98080 1.67750 1.33836 1.07008 1.11007 1.22727 0.96600 0.93528 0.90631 1.23155 1.01025 0.78928 1.00367 0.94816 0.93903 0.97933 0.93562 0.90513 0.90484 0.91813 0.92071 0.90200 0.90348 0.91923 0.91704 0.84612 0.84519 0.82621 0.82580 0.91285 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.72 7.57 59.85 0.45 4.17 16 2 N -0.58 -13.94 2.96 -170.89 -0.51 -14.44 16 3 C -0.26 -6.95 9.60 -15.06 -0.14 -7.10 16 4 H 0.07 1.81 7.87 -52.48 -0.41 1.40 16 5 C 0.00 0.14 5.08 -17.43 -0.09 0.05 16 6 N -0.90 -25.87 10.77 55.49 0.60 -25.27 16 7 Si 0.91 21.42 29.57 -169.99 -5.03 16.39 16 8 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 9 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 C 0.17 3.34 3.55 -65.66 -0.23 3.10 16 12 H 0.08 1.54 7.96 -51.93 -0.41 1.13 16 13 C -0.15 -2.27 6.49 -24.89 -0.16 -2.43 16 14 C 0.10 1.22 6.49 -3.06 -0.02 1.20 16 15 N -0.61 -9.65 3.32 -170.38 -0.57 -10.22 16 16 C 0.52 8.54 7.93 -10.99 -0.09 8.45 16 17 O -0.52 -11.15 16.75 -14.35 -0.24 -11.39 16 18 C 0.05 0.55 5.61 36.01 0.20 0.75 16 19 O -0.36 -4.57 9.86 -55.14 -0.54 -5.11 16 20 C 0.11 0.88 6.09 36.00 0.22 1.10 16 21 C -0.14 -1.33 5.53 -104.49 -0.58 -1.91 16 22 C -0.05 -0.45 9.86 -39.27 -0.39 -0.83 16 23 C -0.18 -1.34 10.11 -39.44 -0.40 -1.74 16 24 C 0.10 0.88 11.18 -17.54 -0.20 0.69 16 25 N -0.49 -5.34 10.36 -13.25 -0.14 -5.48 16 26 C 0.12 1.24 10.86 -17.55 -0.19 1.05 16 27 C 0.09 1.71 6.46 -2.41 -0.02 1.69 16 28 H 0.03 0.88 7.33 -51.93 -0.38 0.50 16 29 H 0.04 1.08 7.38 -51.93 -0.38 0.70 16 30 H 0.00 0.05 6.37 -51.93 -0.33 -0.29 16 31 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.08 1.19 6.47 -51.93 -0.34 0.86 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 39 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 40 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.16 1.30 8.06 -52.48 -0.42 0.88 16 44 H 0.07 1.41 6.96 -51.93 -0.36 1.05 16 45 H 0.07 1.57 8.03 -51.93 -0.42 1.16 16 LS Contribution 373.14 15.07 5.62 5.62 Total: -1.00 -34.59 373.14 -9.24 -43.83 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -6.82 Total: -2.18 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -1.63 Total: 8.24 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -0.61 Total: -55.41 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.78 Total: -16.50 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.59 -9.24 -43.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193736320.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.509 kcal (2) G-P(sol) polarization free energy of solvation -34.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds