Wall clock time and date at job start Fri Apr 10 2020 18:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36934 * 119.99533 * 2 1 4 4 H 1.08005 * 119.99658 * 203.24458 * 3 2 1 5 5 C 1.38812 * 120.00238 * 23.25240 * 3 2 1 6 6 N 1.31620 * 119.99962 * 13.75666 * 5 3 2 7 7 Si 1.86795 * 119.99862 * 193.75484 * 5 3 2 8 8 H 1.48500 * 109.47283 * 90.00129 * 7 5 3 9 9 H 1.48505 * 109.47262 * 209.99694 * 7 5 3 10 10 H 1.48506 * 109.47410 * 329.99851 * 7 5 3 11 11 C 1.46499 * 120.00055 * 180.02562 * 2 1 3 12 12 H 1.08996 * 110.88847 * 183.87821 * 11 2 1 13 13 C 1.55157 * 111.00499 * 59.99913 * 11 2 1 14 14 C 1.54327 * 102.94409 * 206.38636 * 13 11 2 15 15 N 1.47029 * 107.26756 * 22.19155 * 14 13 11 16 16 C 1.34776 * 125.64244 * 181.02446 * 15 14 13 17 17 O 1.21279 * 119.99533 * 180.02562 * 16 15 14 18 18 C 1.50701 * 120.00419 * 0.02562 * 16 15 14 19 19 O 1.42897 * 109.46977 * 180.02562 * 18 16 15 20 20 C 1.42904 * 113.99848 * 180.02562 * 19 18 16 21 21 C 1.50697 * 109.46984 * 179.97438 * 20 19 18 22 22 C 1.38675 * 120.41437 * 90.00162 * 21 20 19 23 23 C 1.38633 * 118.42197 * 179.97438 * 22 21 20 24 24 C 1.38230 * 119.15516 * 0.02562 * 23 22 21 25 25 N 1.31858 * 120.76829 * 0.02562 * 24 23 22 26 26 C 1.31884 * 121.71923 * 359.69819 * 25 24 23 27 27 C 1.47421 * 108.70454 * 1.28907 * 15 14 13 28 28 H 1.08997 * 109.46863 * 275.15672 * 1 2 3 29 29 H 1.09001 * 109.47231 * 35.15836 * 1 2 3 30 30 H 1.09005 * 109.46874 * 155.15711 * 1 2 3 31 31 H 0.97000 * 119.99826 * 180.02562 * 6 5 3 32 32 H 1.08997 * 110.72282 * 88.01881 * 13 11 2 33 33 H 1.09001 * 110.87346 * 324.82015 * 13 11 2 34 34 H 1.08998 * 109.88307 * 262.77577 * 14 13 11 35 35 H 1.08997 * 110.01042 * 141.67864 * 14 13 11 36 36 H 1.09003 * 109.46359 * 60.00057 * 18 16 15 37 37 H 1.08993 * 109.47018 * 300.00106 * 18 16 15 38 38 H 1.08997 * 109.46510 * 300.00064 * 20 19 18 39 39 H 1.08998 * 109.46649 * 60.00002 * 20 19 18 40 40 H 1.07998 * 120.79396 * 359.97438 * 22 21 20 41 41 H 1.08000 * 120.42203 * 180.02562 * 23 22 21 42 42 H 1.08000 * 119.61375 * 179.97438 * 24 23 22 43 43 H 1.08004 * 119.61189 * 180.31262 * 26 25 24 44 44 H 1.09002 * 110.36667 * 94.47956 * 27 15 14 45 45 H 1.08997 * 110.36522 * 216.80516 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1639 1.2239 -0.3692 5 6 1.5401 2.3392 0.4746 6 7 0.4239 2.2564 1.1672 7 14 2.3040 4.0087 0.1303 8 1 1.7648 4.5464 -1.1447 9 1 1.9761 4.9412 1.2386 10 1 3.7783 3.8660 0.0233 11 6 2.1976 -1.2687 -0.0006 12 1 3.2717 -1.0973 0.0684 13 6 1.8484 -2.1119 -1.2553 14 6 2.1074 -3.5581 -0.7830 15 7 2.0280 -3.5586 0.6852 16 6 2.2156 -4.6296 1.4815 17 8 2.1250 -4.5133 2.6853 18 6 2.5380 -5.9715 0.8762 19 8 2.6894 -6.9393 1.9166 20 6 2.9989 -8.2532 1.4476 21 6 3.1361 -9.1866 2.6227 22 6 2.0327 -9.8736 3.1061 23 6 2.2060 -10.7221 4.1888 24 6 3.4639 -10.8536 4.7466 25 7 4.4906 -10.1836 4.2612 26 6 4.3636 -9.3721 3.2293 27 6 1.7030 -2.1949 1.1414 28 1 -0.3633 0.0924 1.0235 29 1 -0.3634 0.8402 -0.5918 30 1 -0.3633 -0.9326 -0.4318 31 1 -0.0022 3.0624 1.4985 32 1 2.5038 -1.8548 -2.0874 33 1 0.8032 -1.9787 -1.5343 34 1 3.0991 -3.8799 -1.1007 35 1 1.3512 -4.2262 -1.1953 36 1 3.4654 -5.9002 0.3079 37 1 1.7279 -6.2750 0.2132 38 1 2.1988 -8.6041 0.7958 39 1 3.9362 -8.2291 0.8918 40 1 1.0615 -9.7507 2.6502 41 1 1.3689 -11.2732 4.5911 42 1 3.6072 -11.5122 5.5905 43 1 5.2286 -8.8439 2.8562 44 1 0.6273 -2.0879 1.2808 45 1 2.2309 -1.9691 2.0679 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193736320.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:26 Heat of formation + Delta-G solvation = -29.150004 kcal Electronic energy + Delta-G solvation = -25853.229029 eV Core-core repulsion = 22064.193448 eV Total energy + Delta-G solvation = -3789.035581 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.23927 -41.01306 -39.22749 -38.25953 -36.55185 -33.95685 -33.51721 -32.70553 -31.43021 -30.14263 -28.55919 -28.06133 -26.90902 -24.98178 -24.54151 -23.73803 -22.97986 -20.99178 -20.39096 -18.95490 -18.48143 -17.95783 -17.80889 -17.54318 -17.39464 -16.83360 -16.59349 -16.22122 -15.78166 -15.44178 -14.99686 -14.79144 -14.74983 -14.58383 -14.36537 -14.18362 -13.99737 -13.75465 -13.50738 -13.22248 -13.09554 -13.00850 -12.78717 -12.48940 -12.39751 -12.32760 -12.19222 -12.04307 -11.82275 -11.40575 -10.95785 -10.78708 -10.76424 -10.65008 -10.40811 -10.04712 -9.68511 -8.80118 -7.84547 -5.35018 0.04560 0.31489 1.47661 1.48029 1.55340 1.57308 1.69676 2.49872 2.68529 3.12925 3.27144 3.47511 3.56295 3.60510 3.88041 3.89857 3.93767 4.05659 4.06559 4.07795 4.18890 4.20916 4.30333 4.38955 4.44187 4.47300 4.50785 4.71435 4.72449 4.80141 4.84132 4.88427 5.02311 5.15571 5.17917 5.22891 5.28368 5.32282 5.45089 5.64347 5.70208 5.74199 6.04371 6.30738 6.55149 6.98428 7.11065 7.13643 7.83204 8.27203 9.18002 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.031347 B = 0.002027 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.016523 B =13812.160386 C =14018.606062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.601 5.601 3 C -0.265 4.265 4 H 0.077 0.923 5 C -0.055 4.055 6 N -0.938 5.938 7 Si 0.972 3.028 8 H -0.283 1.283 9 H -0.300 1.300 10 H -0.267 1.267 11 C 0.165 3.835 12 H 0.074 0.926 13 C -0.140 4.140 14 C 0.103 3.897 15 N -0.612 5.612 16 C 0.514 3.486 17 O -0.589 6.589 18 C 0.060 3.940 19 O -0.397 6.397 20 C 0.104 3.896 21 C -0.154 4.154 22 C -0.064 4.064 23 C -0.175 4.175 24 C 0.088 3.912 25 N -0.520 5.520 26 C 0.101 3.899 27 C 0.098 3.902 28 H -0.002 1.002 29 H 0.017 0.983 30 H 0.037 0.963 31 H 0.248 0.752 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.155 0.845 41 H 0.165 0.835 42 H 0.178 0.822 43 H 0.164 0.836 44 H 0.050 0.950 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.660 -27.516 -6.367 28.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.322 5.322 3 C -0.395 4.395 4 H 0.095 0.905 5 C -0.250 4.250 6 N -0.585 5.585 7 Si 0.800 3.200 8 H -0.210 1.210 9 H -0.227 1.227 10 H -0.191 1.191 11 C 0.056 3.944 12 H 0.092 0.908 13 C -0.179 4.179 14 C -0.018 4.018 15 N -0.347 5.347 16 C 0.304 3.696 17 O -0.469 6.469 18 C -0.019 4.019 19 O -0.316 6.316 20 C 0.028 3.972 21 C -0.156 4.156 22 C -0.090 4.090 23 C -0.194 4.194 24 C -0.069 4.069 25 N -0.229 5.229 26 C -0.055 4.055 27 C -0.028 4.028 28 H 0.016 0.984 29 H 0.036 0.964 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.115 0.885 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.173 0.827 41 H 0.183 0.817 42 H 0.195 0.805 43 H 0.181 0.819 44 H 0.068 0.932 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.341 -27.453 -5.052 28.250 hybrid contribution -0.806 1.592 0.071 1.786 sum 3.535 -25.861 -4.980 26.572 Atomic orbital electron populations 1.20498 0.82712 0.96208 0.97389 1.44059 1.02059 1.00956 1.85162 1.19594 0.99023 0.86328 1.34596 0.90549 1.25876 0.98766 1.02198 0.98148 1.70251 1.21558 1.27746 1.38900 0.85198 0.78500 0.79555 0.76759 1.20963 1.22668 1.19123 1.21684 0.95641 0.84501 0.92598 0.90797 1.23074 1.03071 0.93242 0.98555 1.22363 1.04186 0.98082 0.77189 1.48521 1.69050 1.07935 1.09220 1.20900 0.76459 0.86173 0.86077 1.90712 1.53202 1.85771 1.17235 1.22264 1.04950 0.84620 0.90019 1.88055 1.92232 1.18545 1.32790 1.21472 1.02662 0.80020 0.93016 1.20814 0.95104 0.99485 1.00232 1.21925 0.99163 0.93080 0.94805 1.22513 0.99636 1.00135 0.97126 1.23324 0.88644 0.96146 0.98747 1.67728 1.35253 1.08058 1.11860 1.22965 0.97547 0.94011 0.91005 1.22701 0.99214 0.81844 0.98999 0.98362 0.96373 0.94431 0.94282 0.88456 0.90961 0.88022 0.88263 0.86603 0.86557 0.89306 0.89516 0.82746 0.81723 0.80473 0.81927 0.93218 0.94493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.51 7.57 127.77 0.97 9.48 16 2 N -0.60 -29.00 2.96 -694.58 -2.05 -31.05 16 3 C -0.27 -14.19 9.60 84.03 0.81 -13.38 16 4 H 0.08 3.91 7.87 -2.91 -0.02 3.88 16 5 C -0.05 -3.04 5.08 84.86 0.43 -2.60 16 6 N -0.94 -55.85 10.77 21.65 0.23 -55.61 16 7 Si 0.97 44.71 29.57 68.60 2.03 46.73 16 8 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 9 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 10 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 11 C 0.16 6.24 3.55 46.46 0.16 6.40 16 12 H 0.07 2.85 7.96 -2.39 -0.02 2.83 16 13 C -0.14 -3.65 6.49 31.78 0.21 -3.44 16 14 C 0.10 1.96 6.49 86.73 0.56 2.53 16 15 N -0.61 -18.00 3.32 -811.34 -2.70 -20.70 16 16 C 0.51 15.98 7.93 87.66 0.69 16.67 16 17 O -0.59 -25.68 16.75 16.01 0.27 -25.41 16 18 C 0.06 1.09 5.61 71.24 0.40 1.49 16 19 O -0.40 -9.19 9.86 -129.94 -1.28 -10.47 16 20 C 0.10 1.43 6.09 71.23 0.43 1.86 16 21 C -0.15 -2.69 5.53 -19.78 -0.11 -2.80 16 22 C -0.06 -0.96 9.86 22.47 0.22 -0.74 16 23 C -0.17 -2.36 10.11 22.36 0.23 -2.13 16 24 C 0.09 1.44 11.18 84.69 0.95 2.39 16 25 N -0.52 -11.33 10.36 -195.84 -2.03 -13.36 16 26 C 0.10 2.01 10.86 84.67 0.92 2.93 16 27 C 0.10 3.82 6.46 86.93 0.56 4.38 16 28 H 0.00 -0.11 7.33 -2.39 -0.02 -0.12 16 29 H 0.02 0.92 7.38 -2.39 -0.02 0.91 16 30 H 0.04 1.50 6.37 -2.38 -0.02 1.49 16 31 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 32 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.07 1.99 6.47 -2.39 -0.02 1.97 16 34 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.09 0.73 8.10 -2.39 -0.02 0.71 16 39 H 0.09 0.77 8.09 -2.39 -0.02 0.75 16 40 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 41 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 42 H 0.18 1.85 8.06 -2.91 -0.02 1.83 16 43 H 0.16 2.70 8.06 -2.91 -0.02 2.67 16 44 H 0.05 2.11 6.96 -2.39 -0.02 2.09 16 45 H 0.04 1.67 8.03 -2.39 -0.02 1.65 16 Total: -1.00 -81.79 373.14 2.88 -78.91 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 0.98 Total: 7.93 kcal Atomic # 6 Polarization: 15.60 SS G_CDS: 7.43 Total: 23.03 kcal Atomic # 7 Polarization: -114.18 SS G_CDS: -6.55 Total: -120.73 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -1.01 Total: -35.88 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -81.79 2.88 -78.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193736320.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.757 kcal (2) G-P(sol) polarization free energy of solvation -81.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds