Wall clock time and date at job start Fri Apr 10 2020 18:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00080 * 2 1 4 4 H 1.48508 * 109.46772 * 269.99680 * 3 2 1 5 5 H 1.48503 * 109.47316 * 29.99241 * 3 2 1 6 6 H 1.48499 * 109.47273 * 150.00016 * 3 2 1 7 7 C 1.38817 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99327 * 180.02562 * 7 2 1 9 9 N 1.36928 * 120.00004 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99865 * 179.97438 * 9 7 2 11 11 H 1.08993 * 112.88292 * 336.34855 * 10 9 7 12 12 C 1.53949 * 113.74561 * 107.77218 * 10 9 7 13 13 C 1.53950 * 87.29535 * 139.21880 * 12 10 9 14 14 H 1.09008 * 113.74633 * 220.78601 * 13 12 10 15 15 N 1.46499 * 113.66341 * 89.73825 * 13 12 10 16 16 C 1.34777 * 119.99665 * 108.09210 * 15 13 12 17 17 O 1.21283 * 119.99990 * 359.71991 * 16 15 13 18 18 C 1.50698 * 119.99538 * 179.72653 * 16 15 13 19 19 C 1.52999 * 109.47004 * 179.97438 * 18 16 15 20 20 C 1.50702 * 109.47522 * 179.97438 * 19 18 16 21 21 N 1.33241 * 125.52802 * 269.69582 * 20 19 18 22 22 C 1.30838 * 109.82649 * 179.84986 * 21 20 19 23 23 N 1.34422 * 108.07675 * 0.40403 * 22 21 20 24 24 H 0.97003 * 126.82472 * 179.78602 * 23 22 21 25 25 N 1.30717 * 125.52371 * 89.99604 * 20 19 18 26 26 C 1.52909 * 86.78227 * 335.26395 * 13 12 10 27 27 C 1.52907 * 121.14177 * 259.18037 * 26 13 12 28 28 C 1.53951 * 86.78403 * 209.38090 * 27 26 13 29 29 C 1.52906 * 121.13749 * 150.61521 * 26 13 12 30 30 H 0.97002 * 120.00151 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00652 * 0.02562 * 9 7 2 32 32 H 1.09002 * 113.58121 * 24.61574 * 12 10 9 33 33 H 1.08996 * 113.57817 * 253.81785 * 12 10 9 34 34 H 0.97001 * 119.99790 * 287.80923 * 15 13 12 35 35 H 1.09003 * 109.47112 * 299.99065 * 18 16 15 36 36 H 1.08993 * 109.47916 * 59.99687 * 18 16 15 37 37 H 1.09000 * 109.47527 * 299.99994 * 19 18 16 38 38 H 1.09007 * 109.47302 * 59.99534 * 19 18 16 39 39 H 1.08001 * 125.95654 * 180.12359 * 22 21 20 40 40 H 1.08997 * 113.66251 * 323.85149 * 27 26 13 41 41 H 1.09002 * 113.66158 * 94.90664 * 27 26 13 42 42 H 1.09000 * 113.57860 * 270.12530 * 28 27 26 43 43 H 1.09001 * 113.64943 * 139.34808 * 28 27 26 44 44 H 1.09002 * 113.66647 * 265.09510 * 29 26 13 45 45 H 1.09003 * 113.66258 * 36.05869 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4476 2.6528 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 3.0666 -3.5639 -0.4023 12 6 1.9955 -4.4087 1.3425 13 6 1.8270 -5.7030 0.5260 14 1 1.0971 -6.3951 0.9462 15 7 3.0952 -6.3512 0.1831 16 6 3.4518 -7.4990 0.7929 17 8 2.7252 -7.9924 1.6293 18 6 4.7535 -8.1690 0.4357 19 6 4.9158 -9.4436 1.2663 20 6 6.2172 -10.1141 0.9087 21 7 6.3795 -11.0309 -0.0444 22 6 7.6332 -11.4021 -0.0943 23 7 8.3071 -10.7229 0.8499 24 1 9.2536 -10.7910 1.0511 25 7 7.3688 -9.8945 1.4869 26 6 1.2656 -4.8229 -0.5914 27 6 -0.2406 -4.7144 -0.8313 28 6 0.1011 -4.4608 -2.3109 29 6 1.4182 -5.2175 -2.0607 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3881 -0.0002 32 1 1.1223 -4.1557 1.9438 33 1 2.9261 -4.3685 1.9086 34 1 3.6762 -5.9565 -0.4859 35 1 4.7523 -8.4235 -0.6242 36 1 5.5808 -7.4912 0.6456 37 1 4.9172 -9.1889 2.3262 38 1 4.0885 -10.1217 1.0567 39 1 8.0523 -12.1307 -0.7724 40 1 -0.7791 -5.6465 -0.6603 41 1 -0.7020 -3.8599 -0.3362 42 1 0.2424 -3.4071 -2.5513 43 1 -0.5674 -4.9673 -3.0070 44 1 2.2820 -4.7649 -2.5479 45 1 1.3475 -6.2911 -2.2350 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202724270.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:59 Heat of formation + Delta-G solvation = 100.193111 kcal Electronic energy + Delta-G solvation = -26262.494034 eV Core-core repulsion = 22511.359942 eV Total energy + Delta-G solvation = -3751.134092 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.46022 -40.58319 -39.00427 -35.05012 -34.45261 -34.00817 -32.44385 -32.13705 -30.85744 -29.75699 -25.92423 -25.38663 -24.36746 -24.07844 -23.10853 -22.08992 -20.88848 -20.28342 -19.90799 -18.70929 -17.93384 -17.29394 -16.78487 -16.04840 -15.88088 -15.61865 -15.24672 -15.01052 -14.78786 -14.36195 -13.83103 -13.62741 -13.34866 -13.08784 -12.54888 -12.48216 -12.43174 -12.38125 -11.97108 -11.75546 -11.65775 -11.34501 -11.31391 -10.87912 -10.81269 -10.56553 -10.48160 -10.39788 -10.16775 -10.12379 -10.08695 -9.82657 -9.75571 -9.55873 -9.35547 -8.84165 -8.63005 -6.96509 -5.79677 -3.07958 1.22595 2.27997 2.49597 2.72493 3.24788 3.41545 3.47280 3.48759 3.80759 4.31837 4.56079 4.57271 4.72798 4.83202 4.97300 4.98974 5.07812 5.14249 5.28832 5.31763 5.37766 5.47030 5.70318 5.72217 5.76892 5.86012 5.88449 5.98845 6.04649 6.08774 6.09824 6.14813 6.22927 6.33855 6.45679 6.54422 6.60396 6.62192 6.69317 6.92097 6.96949 7.09518 7.66601 7.68238 7.70961 8.34506 8.39154 9.50700 10.08438 10.43255 11.42556 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017906 B = 0.002477 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.347000 B =11303.130996 C =12116.328373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.708 5.708 10 C 0.191 3.809 11 H 0.075 0.925 12 C -0.175 4.175 13 C 0.129 3.871 14 H 0.096 0.904 15 N -0.703 5.703 16 C 0.517 3.483 17 O -0.544 6.544 18 C -0.133 4.133 19 C -0.011 4.011 20 C 0.232 3.768 21 N -0.540 5.540 22 C 0.260 3.740 23 N -0.487 5.487 24 H 0.441 0.559 25 N -0.312 5.312 26 C -0.121 4.121 27 C -0.110 4.110 28 C -0.131 4.131 29 C -0.125 4.125 30 H 0.256 0.744 31 H 0.387 0.613 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.400 0.600 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.223 0.777 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.538 -22.160 -3.138 26.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.346 5.346 10 C 0.079 3.921 11 H 0.093 0.907 12 C -0.217 4.217 13 C 0.024 3.976 14 H 0.114 0.886 15 N -0.352 5.352 16 C 0.303 3.697 17 O -0.421 6.421 18 C -0.175 4.175 19 C -0.051 4.051 20 C -0.050 4.050 21 N -0.268 5.268 22 C -0.039 4.039 23 N -0.205 5.205 24 H 0.287 0.713 25 N -0.141 5.141 26 C -0.124 4.124 27 C -0.148 4.148 28 C -0.169 4.169 29 C -0.163 4.163 30 H 0.065 0.935 31 H 0.223 0.777 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.234 0.766 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.239 0.761 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.906 -21.936 -2.160 25.542 hybrid contribution 1.375 0.878 -0.366 1.672 sum 14.281 -21.057 -2.526 25.568 Atomic orbital electron populations 1.69653 1.05078 1.25730 1.57420 1.24744 0.95502 0.97693 1.02845 0.86212 0.78697 0.83928 0.77465 1.21755 1.21791 1.20791 1.19273 0.91007 0.84209 1.42925 0.91219 1.42399 1.05917 0.99574 1.86760 1.21282 0.94282 0.84553 0.91995 0.90708 1.24263 1.01899 0.95542 0.99975 1.21716 0.85234 0.93496 0.97203 0.88635 1.45604 1.22352 1.24557 1.42698 1.20419 0.87500 0.80572 0.81188 1.90703 1.53976 1.64501 1.32963 1.21563 0.96449 0.97113 1.02328 1.19663 0.89231 0.94965 1.01236 1.24361 0.95082 0.94175 0.91404 1.70465 1.17051 1.16389 1.22939 1.26147 0.88326 0.96627 0.92818 1.48165 1.12218 1.32279 1.27831 0.71309 1.78076 0.99214 1.15788 1.21028 1.23581 0.97646 0.98076 0.93104 1.22448 0.93896 1.01605 0.96825 1.22739 0.96618 1.01416 0.96095 1.22635 0.98502 0.99232 0.95931 0.93458 0.77693 0.89648 0.92309 0.76559 0.88369 0.88617 0.88539 0.88091 0.76112 0.90778 0.90323 0.89228 0.92527 0.91815 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.50 13.06 55.49 0.72 -26.78 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.24 -6.54 9.97 -15.06 -0.15 -6.69 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.41 16 9 N -0.71 -16.96 5.33 -52.99 -0.28 -17.24 16 10 C 0.19 3.62 4.27 -67.48 -0.29 3.33 16 11 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 12 C -0.17 -3.10 7.69 -25.75 -0.20 -3.29 16 13 C 0.13 1.98 4.13 -67.48 -0.28 1.70 16 14 H 0.10 1.58 7.46 -51.92 -0.39 1.19 16 15 N -0.70 -8.96 5.05 -53.37 -0.27 -9.23 16 16 C 0.52 6.75 7.83 -10.99 -0.09 6.66 16 17 O -0.54 -9.08 15.58 5.55 0.09 -8.99 16 18 C -0.13 -1.30 5.68 -27.88 -0.16 -1.46 16 19 C -0.01 -0.11 5.13 -27.88 -0.14 -0.26 16 20 C 0.23 2.49 7.39 -156.85 -1.16 1.33 16 21 N -0.54 -5.37 11.19 -11.97 -0.13 -5.51 16 22 C 0.26 1.52 13.13 -90.65 -1.19 0.33 16 23 N -0.49 -3.02 7.45 29.53 0.22 -2.80 16 24 H 0.44 1.06 8.96 -182.33 -1.63 -0.57 16 25 N -0.31 -3.27 12.80 32.42 0.41 -2.85 16 26 C -0.12 -1.92 0.92 -154.71 -0.14 -2.06 16 27 C -0.11 -1.76 7.47 -26.28 -0.20 -1.96 16 28 C -0.13 -2.03 8.08 -25.75 -0.21 -2.24 16 29 C -0.13 -1.76 7.49 -26.29 -0.20 -1.96 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.39 9.85 5.92 -40.82 -0.24 9.61 16 32 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.40 4.31 8.62 -40.82 -0.35 3.96 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.10 1.06 8.10 -51.93 -0.42 0.64 16 38 H 0.10 1.10 8.10 -51.93 -0.42 0.68 16 39 H 0.22 0.14 8.06 -52.49 -0.42 -0.29 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.08 1.45 6.42 -51.93 -0.33 1.11 16 42 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 375.14 15.07 5.65 5.65 Total: -1.00 -34.80 375.14 -11.08 -45.89 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -7.98 Total: 11.79 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -4.49 Total: -6.98 kcal Atomic # 7 Polarization: -65.09 SS G_CDS: 0.67 Total: -64.41 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.80 -11.08 -45.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202724270.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.080 kcal (2) G-P(sol) polarization free energy of solvation -34.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds