Wall clock time and date at job start Fri Apr 10 2020 18:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00080 * 2 1 4 4 H 1.48508 * 109.46772 * 269.99680 * 3 2 1 5 5 H 1.48503 * 109.47316 * 29.99241 * 3 2 1 6 6 H 1.48499 * 109.47273 * 150.00016 * 3 2 1 7 7 C 1.38817 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99327 * 180.02562 * 7 2 1 9 9 N 1.36928 * 120.00004 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99865 * 179.97438 * 9 7 2 11 11 H 1.08993 * 112.88292 * 336.34855 * 10 9 7 12 12 C 1.53949 * 113.74561 * 107.77218 * 10 9 7 13 13 C 1.53950 * 87.29535 * 139.21880 * 12 10 9 14 14 H 1.09008 * 113.74633 * 220.78601 * 13 12 10 15 15 N 1.46499 * 113.66341 * 89.73825 * 13 12 10 16 16 C 1.34777 * 119.99665 * 108.09210 * 15 13 12 17 17 O 1.21283 * 119.99990 * 359.71991 * 16 15 13 18 18 C 1.50698 * 119.99538 * 179.72653 * 16 15 13 19 19 C 1.52999 * 109.47004 * 179.97438 * 18 16 15 20 20 C 1.50702 * 109.47522 * 179.97438 * 19 18 16 21 21 N 1.33241 * 125.52802 * 269.69582 * 20 19 18 22 22 C 1.30838 * 109.82649 * 179.84986 * 21 20 19 23 23 N 1.34422 * 108.07675 * 0.40403 * 22 21 20 24 24 H 0.97003 * 126.82472 * 179.78602 * 23 22 21 25 25 N 1.30717 * 125.52371 * 89.99604 * 20 19 18 26 26 C 1.52909 * 86.78227 * 335.26395 * 13 12 10 27 27 C 1.52907 * 121.14177 * 259.18037 * 26 13 12 28 28 C 1.53951 * 86.78403 * 209.38090 * 27 26 13 29 29 C 1.52906 * 121.13749 * 150.61521 * 26 13 12 30 30 H 0.97002 * 120.00151 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00652 * 0.02562 * 9 7 2 32 32 H 1.09002 * 113.58121 * 24.61574 * 12 10 9 33 33 H 1.08996 * 113.57817 * 253.81785 * 12 10 9 34 34 H 0.97001 * 119.99790 * 287.80923 * 15 13 12 35 35 H 1.09003 * 109.47112 * 299.99065 * 18 16 15 36 36 H 1.08993 * 109.47916 * 59.99687 * 18 16 15 37 37 H 1.09000 * 109.47527 * 299.99994 * 19 18 16 38 38 H 1.09007 * 109.47302 * 59.99534 * 19 18 16 39 39 H 1.08001 * 125.95654 * 180.12359 * 22 21 20 40 40 H 1.08997 * 113.66251 * 323.85149 * 27 26 13 41 41 H 1.09002 * 113.66158 * 94.90664 * 27 26 13 42 42 H 1.09000 * 113.57860 * 270.12530 * 28 27 26 43 43 H 1.09001 * 113.64943 * 139.34808 * 28 27 26 44 44 H 1.09002 * 113.66647 * 265.09510 * 29 26 13 45 45 H 1.09003 * 113.66258 * 36.05869 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4476 2.6528 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 3.0666 -3.5639 -0.4023 12 6 1.9955 -4.4087 1.3425 13 6 1.8270 -5.7030 0.5260 14 1 1.0971 -6.3951 0.9462 15 7 3.0952 -6.3512 0.1831 16 6 3.4518 -7.4990 0.7929 17 8 2.7252 -7.9924 1.6293 18 6 4.7535 -8.1690 0.4357 19 6 4.9158 -9.4436 1.2663 20 6 6.2172 -10.1141 0.9087 21 7 6.3795 -11.0309 -0.0444 22 6 7.6332 -11.4021 -0.0943 23 7 8.3071 -10.7229 0.8499 24 1 9.2536 -10.7910 1.0511 25 7 7.3688 -9.8945 1.4869 26 6 1.2656 -4.8229 -0.5914 27 6 -0.2406 -4.7144 -0.8313 28 6 0.1011 -4.4608 -2.3109 29 6 1.4182 -5.2175 -2.0607 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3881 -0.0002 32 1 1.1223 -4.1557 1.9438 33 1 2.9261 -4.3685 1.9086 34 1 3.6762 -5.9565 -0.4859 35 1 4.7523 -8.4235 -0.6242 36 1 5.5808 -7.4912 0.6456 37 1 4.9172 -9.1889 2.3262 38 1 4.0885 -10.1217 1.0567 39 1 8.0523 -12.1307 -0.7724 40 1 -0.7791 -5.6465 -0.6603 41 1 -0.7020 -3.8599 -0.3362 42 1 0.2424 -3.4071 -2.5513 43 1 -0.5674 -4.9673 -3.0070 44 1 2.2820 -4.7649 -2.5479 45 1 1.3475 -6.2911 -2.2350 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202724270.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:58 Heat of formation + Delta-G solvation = 76.832648 kcal Electronic energy + Delta-G solvation = -26263.507019 eV Core-core repulsion = 22511.359942 eV Total energy + Delta-G solvation = -3752.147077 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.04612 -41.89064 -40.16448 -36.35588 -35.76817 -35.21340 -33.78003 -32.93899 -31.90191 -31.25690 -27.06676 -26.64285 -25.99612 -25.43019 -23.77666 -23.51274 -21.99206 -21.21639 -20.96593 -19.59555 -19.22521 -18.77326 -18.01257 -17.19969 -16.72320 -16.68053 -16.37577 -16.32516 -15.89056 -15.66378 -15.41249 -14.99769 -14.34094 -14.27447 -13.89263 -13.76511 -13.36391 -13.29058 -13.21909 -13.13615 -13.07629 -12.85997 -12.73864 -12.47108 -12.14700 -12.12977 -11.89074 -11.85234 -11.29095 -11.18318 -11.08784 -11.03218 -10.87481 -10.85986 -10.65983 -10.60418 -9.85784 -8.93703 -7.92226 -5.19394 0.67512 1.47896 1.48831 1.57058 1.67537 1.80525 1.88702 2.24026 2.57494 3.22229 3.38789 3.52743 3.67156 3.73305 3.80769 3.84076 3.96960 4.04614 4.12016 4.15994 4.23691 4.29626 4.35141 4.58828 4.63275 4.69655 4.78305 4.90057 4.93149 4.94649 5.01332 5.06259 5.11963 5.16042 5.21949 5.27539 5.30704 5.40148 5.51250 5.62328 5.66931 5.73113 6.29148 6.29853 6.63117 7.13359 7.31020 7.36842 8.14554 8.37643 9.30928 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017906 B = 0.002477 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.347000 B =11303.130996 C =12116.328373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.969 3.031 4 H -0.287 1.287 5 H -0.299 1.299 6 H -0.271 1.271 7 C -0.239 4.239 8 H 0.076 0.924 9 N -0.720 5.720 10 C 0.179 3.821 11 H 0.082 0.918 12 C -0.174 4.174 13 C 0.149 3.851 14 H 0.088 0.912 15 N -0.694 5.694 16 C 0.519 3.481 17 O -0.582 6.582 18 C -0.118 4.118 19 C -0.007 4.007 20 C 0.222 3.778 21 N -0.577 5.577 22 C 0.277 3.723 23 N -0.477 5.477 24 H 0.458 0.542 25 N -0.347 5.347 26 C -0.113 4.113 27 C -0.113 4.113 28 C -0.131 4.131 29 C -0.108 4.108 30 H 0.249 0.751 31 H 0.377 0.623 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.413 0.587 35 H 0.118 0.882 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.273 0.727 40 H 0.096 0.904 41 H 0.046 0.954 42 H 0.056 0.944 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.036 -24.228 -4.652 29.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.798 3.202 4 H -0.214 1.214 5 H -0.226 1.226 6 H -0.196 1.196 7 C -0.371 4.371 8 H 0.094 0.906 9 N -0.358 5.358 10 C 0.068 3.932 11 H 0.100 0.900 12 C -0.216 4.216 13 C 0.042 3.958 14 H 0.106 0.894 15 N -0.344 5.344 16 C 0.307 3.693 17 O -0.462 6.462 18 C -0.159 4.159 19 C -0.048 4.048 20 C -0.061 4.061 21 N -0.307 5.307 22 C -0.021 4.021 23 N -0.196 5.196 24 H 0.306 0.694 25 N -0.177 5.177 26 C -0.115 4.115 27 C -0.151 4.151 28 C -0.168 4.168 29 C -0.145 4.145 30 H 0.058 0.942 31 H 0.211 0.789 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.250 0.750 35 H 0.136 0.864 36 H 0.127 0.873 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.288 0.712 40 H 0.115 0.885 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.088 0.912 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 15.495 -24.044 -3.687 28.842 hybrid contribution 0.679 1.393 0.131 1.555 sum 16.174 -22.652 -3.555 28.060 Atomic orbital electron populations 1.69812 1.06526 1.25866 1.59691 1.25506 0.96299 1.00905 1.04055 0.85206 0.77694 0.79916 0.77338 1.21429 1.22639 1.19597 1.19669 0.91463 0.85341 1.40600 0.90585 1.42556 1.05622 1.00617 1.87042 1.21573 0.94741 0.83559 0.93286 0.90028 1.24129 1.01015 0.97143 0.99284 1.21356 0.86227 0.92272 0.95909 0.89361 1.45498 1.21577 1.24425 1.42917 1.20968 0.88056 0.80110 0.80171 1.90696 1.55379 1.65464 1.34634 1.21481 0.94550 0.96614 1.03228 1.19532 0.89450 0.95170 1.00616 1.24253 0.94974 0.94818 0.92050 1.70440 1.19360 1.17184 1.23670 1.27082 0.87120 0.95823 0.92105 1.48103 1.12684 1.31429 1.27411 0.69360 1.77971 0.99880 1.17526 1.22318 1.23339 0.97247 0.96161 0.94765 1.22505 0.94035 1.01391 0.97167 1.22650 0.98241 0.99939 0.96004 1.22601 0.97775 1.00524 0.93613 0.94179 0.78938 0.91611 0.92387 0.75012 0.86372 0.87322 0.89838 0.88948 0.71161 0.88531 0.93493 0.92567 0.90219 0.91164 0.88341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.96 13.06 21.65 0.28 -58.68 16 2 C -0.08 -4.29 5.50 84.86 0.47 -3.83 16 3 Si 0.97 45.97 29.55 68.60 2.03 48.00 16 4 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.24 -12.97 9.97 84.04 0.84 -12.14 16 8 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 9 N -0.72 -35.25 5.33 -321.56 -1.71 -36.97 16 10 C 0.18 6.72 4.27 45.28 0.19 6.92 16 11 H 0.08 2.95 8.10 -2.39 -0.02 2.93 16 12 C -0.17 -6.18 7.69 31.23 0.24 -5.94 16 13 C 0.15 4.39 4.13 45.28 0.19 4.58 16 14 H 0.09 2.83 7.46 -2.38 -0.02 2.81 16 15 N -0.69 -16.26 5.05 -441.15 -2.23 -18.49 16 16 C 0.52 12.74 7.83 87.66 0.69 13.43 16 17 O -0.58 -19.10 15.58 -3.04 -0.05 -19.15 16 18 C -0.12 -2.08 5.68 29.85 0.17 -1.91 16 19 C -0.01 -0.15 5.13 29.85 0.15 0.01 16 20 C 0.22 4.48 7.39 138.63 1.03 5.51 16 21 N -0.58 -10.28 11.19 -191.80 -2.15 -12.43 16 22 C 0.28 2.36 13.13 180.36 2.37 4.73 16 23 N -0.48 -4.74 7.45 -60.49 -0.45 -5.19 16 24 H 0.46 0.99 8.96 -213.09 -1.91 -0.92 16 25 N -0.35 -6.79 12.80 -51.33 -0.66 -7.45 16 26 C -0.11 -3.44 0.92 -52.31 -0.05 -3.49 16 27 C -0.11 -3.58 7.47 30.88 0.23 -3.35 16 28 C -0.13 -3.89 8.08 31.23 0.25 -3.64 16 29 C -0.11 -2.74 7.49 30.88 0.23 -2.51 16 30 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 31 H 0.38 19.95 5.92 -92.71 -0.55 19.40 16 32 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.41 7.70 8.62 -92.71 -0.80 6.90 16 35 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.08 1.87 8.10 -2.39 -0.02 1.85 16 38 H 0.09 2.00 8.10 -2.38 -0.02 1.98 16 39 H 0.27 -0.96 8.06 -2.91 -0.02 -0.98 16 40 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.05 1.80 6.42 -2.39 -0.02 1.78 16 42 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.10 2.08 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -77.69 375.14 -0.16 -77.85 By element: Atomic # 1 Polarization: 36.37 SS G_CDS: -2.22 Total: 34.15 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: 6.99 Total: -1.64 kcal Atomic # 7 Polarization: -132.30 SS G_CDS: -6.91 Total: -139.21 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.05 Total: -19.15 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -77.69 -0.16 -77.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202724270.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.683 kcal (2) G-P(sol) polarization free energy of solvation -77.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds