Wall clock time and date at job start Fri Apr 10 2020 18:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00176 * 2 1 4 4 H 1.48496 * 109.47084 * 270.00035 * 3 2 1 5 5 H 1.48498 * 109.47260 * 30.00299 * 3 2 1 6 6 H 1.48501 * 109.47049 * 150.00278 * 3 2 1 7 7 C 1.38814 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00080 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99945 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00043 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.94779 * 333.09817 * 10 9 7 12 12 C 1.53957 * 113.66181 * 104.50434 * 10 9 7 13 13 C 1.53945 * 87.29527 * 139.20819 * 12 10 9 14 14 H 1.09002 * 113.66835 * 89.73491 * 13 12 10 15 15 N 1.46502 * 113.66027 * 220.70212 * 13 12 10 16 16 C 1.34775 * 119.99774 * 255.48954 * 15 13 12 17 17 O 1.21280 * 119.99770 * 0.02562 * 16 15 13 18 18 C 1.50702 * 120.00040 * 180.02562 * 16 15 13 19 19 C 1.52998 * 109.47152 * 180.02562 * 18 16 15 20 20 C 1.50702 * 109.47152 * 180.02562 * 19 18 16 21 21 C 1.35345 * 126.90874 * 274.68303 * 20 19 18 22 22 N 1.33774 * 106.49371 * 179.90499 * 21 20 19 23 23 N 1.28637 * 108.88659 * 0.36914 * 22 21 20 24 24 N 1.28716 * 110.17689 * 359.76678 * 23 22 21 25 25 H 0.96995 * 125.86952 * 179.97438 * 24 23 22 26 26 C 1.52906 * 113.66132 * 201.68613 * 10 9 7 27 27 C 1.52911 * 121.13708 * 94.91122 * 26 10 9 28 28 C 1.53953 * 86.78498 * 209.37459 * 27 26 10 29 29 C 1.52908 * 121.14322 * 346.35006 * 26 10 9 30 30 H 0.97004 * 119.99887 * 359.97438 * 1 2 3 31 31 H 0.97004 * 119.99890 * 359.97438 * 9 7 2 32 32 H 1.09004 * 113.57788 * 253.80949 * 12 10 9 33 33 H 1.08997 * 113.58156 * 24.52402 * 12 10 9 34 34 H 0.96995 * 120.00305 * 75.49593 * 15 13 12 35 35 H 1.08996 * 109.46921 * 300.00226 * 18 16 15 36 36 H 1.09000 * 109.47005 * 60.00368 * 18 16 15 37 37 H 1.09004 * 109.47381 * 299.99990 * 19 18 16 38 38 H 1.09002 * 109.47419 * 59.99730 * 19 18 16 39 39 H 1.08003 * 126.75647 * 0.03745 * 21 20 19 40 40 H 1.09001 * 113.66341 * 323.84544 * 27 26 10 41 41 H 1.08996 * 113.66624 * 94.90194 * 27 26 10 42 42 H 1.09002 * 113.58246 * 270.13531 * 28 27 26 43 43 H 1.08997 * 113.65416 * 139.34277 * 28 27 26 44 44 H 1.09003 * 113.66175 * 265.09643 * 29 26 10 45 45 H 1.09004 * 113.66268 * 36.05302 * 29 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0579 -3.6568 -0.0016 11 1 3.0460 -3.5771 -0.4549 12 6 2.0599 -4.3691 1.3633 13 6 1.8526 -5.6864 0.5942 14 1 2.7829 -6.1773 0.3081 15 7 0.9011 -6.5978 1.2348 16 6 1.3488 -7.6834 1.8962 17 8 2.5393 -7.9056 1.9613 18 6 0.3702 -8.6213 2.5548 19 6 1.1331 -9.7618 3.2316 20 6 0.1544 -10.6999 3.8896 21 6 -0.3831 -10.5778 5.1257 22 7 -1.1948 -11.6280 5.2924 23 7 -1.1560 -12.3565 4.2329 24 7 -0.3591 -11.8370 3.3658 25 1 -0.1605 -12.1986 2.4880 26 6 1.2381 -4.8387 -0.5203 27 6 1.3199 -5.2764 -1.9831 28 6 -0.1329 -5.7618 -1.8289 29 6 -0.2779 -4.7354 -0.6907 30 1 -0.4850 0.8401 0.0004 31 1 0.3554 -2.3880 -0.0016 32 1 3.0166 -4.3135 1.8827 33 1 1.2174 -4.0964 1.9987 34 1 -0.0510 -6.4199 1.1830 35 1 -0.2076 -8.0774 3.3020 36 1 -0.3035 -9.0308 1.8020 37 1 1.7112 -10.3058 2.4845 38 1 1.8066 -9.3520 3.9844 39 1 -0.1956 -9.7867 5.8368 40 1 1.4323 -4.4476 -2.6821 41 1 2.0335 -6.0810 -2.1598 42 1 -0.2139 -6.7965 -1.4958 43 1 -0.7604 -5.5456 -2.6935 44 1 -0.8408 -5.1078 0.1653 45 1 -0.6148 -3.7540 -1.0249 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203409882.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:08 Heat of formation + Delta-G solvation = 105.231845 kcal Electronic energy + Delta-G solvation = -26334.390155 eV Core-core repulsion = 22583.474559 eV Total energy + Delta-G solvation = -3750.915596 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.66329 -40.76119 -39.16066 -35.07333 -34.75083 -34.17848 -33.51829 -32.56982 -30.45241 -29.70514 -25.87975 -25.59183 -24.49722 -24.02014 -23.32890 -22.45065 -21.74789 -20.46162 -20.35137 -18.64863 -18.11275 -17.39922 -16.84463 -16.46470 -16.13995 -15.90199 -15.18577 -15.01985 -14.69325 -14.56050 -14.26806 -13.79450 -13.62584 -13.10455 -12.88835 -12.72549 -12.50460 -12.25606 -12.09546 -11.90214 -11.71243 -11.58215 -11.37227 -11.18884 -11.07301 -10.94906 -10.84918 -10.79270 -10.29029 -10.15374 -10.10627 -9.95308 -9.71817 -9.57397 -9.42121 -8.87740 -8.79754 -7.01287 -5.84415 -3.12712 1.15369 2.19083 2.34460 2.53648 3.13653 3.39369 3.45470 3.46542 4.05326 4.27475 4.46007 4.53182 4.56768 4.64732 4.80885 4.82225 4.84910 4.94003 5.04864 5.06708 5.11490 5.18999 5.39126 5.53029 5.54950 5.56551 5.75696 5.77542 5.81343 5.92911 5.95476 6.04937 6.08132 6.18012 6.24628 6.31949 6.43145 6.48142 6.55093 6.68176 6.84957 7.00559 7.52021 7.65536 8.07794 8.16258 8.34610 9.46296 10.02976 10.37755 11.37986 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.021720 B = 0.002361 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.849855 B =11854.734771 C =12251.507745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.707 5.707 10 C 0.181 3.819 11 H 0.079 0.921 12 C -0.174 4.174 13 C 0.144 3.856 14 H 0.110 0.890 15 N -0.711 5.711 16 C 0.512 3.488 17 O -0.546 6.546 18 C -0.139 4.139 19 C -0.032 4.032 20 C -0.006 4.006 21 C -0.045 4.045 22 N -0.266 5.266 23 N -0.084 5.084 24 N -0.390 5.390 25 H 0.447 0.553 26 C -0.123 4.123 27 C -0.122 4.122 28 C -0.140 4.140 29 C -0.108 4.108 30 H 0.256 0.744 31 H 0.386 0.614 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.400 0.600 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.192 0.808 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.857 -20.647 1.848 20.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.345 5.345 10 C 0.068 3.932 11 H 0.097 0.903 12 C -0.216 4.216 13 C 0.040 3.960 14 H 0.128 0.872 15 N -0.361 5.361 16 C 0.298 3.702 17 O -0.423 6.423 18 C -0.180 4.180 19 C -0.072 4.072 20 C -0.140 4.140 21 C -0.203 4.203 22 N -0.133 5.133 23 N -0.064 5.064 24 N -0.111 5.111 25 H 0.293 0.707 26 C -0.125 4.125 27 C -0.159 4.159 28 C -0.178 4.178 29 C -0.146 4.146 30 H 0.065 0.935 31 H 0.221 0.779 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.236 0.764 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.124 0.876 39 H 0.209 0.791 40 H 0.105 0.895 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.908 -21.746 2.344 21.891 hybrid contribution 0.446 1.716 -0.765 1.931 sum -0.462 -20.030 1.579 20.098 Atomic orbital electron populations 1.69647 1.05122 1.25782 1.57551 1.24744 0.95522 0.97752 1.02790 0.86192 0.78723 0.83772 0.77522 1.21708 1.21783 1.20710 1.19297 0.91127 0.84109 1.42838 0.91058 1.42313 1.05766 0.99510 1.86934 1.21146 0.94852 0.84827 0.92376 0.90345 1.24289 1.01706 0.94918 1.00730 1.22171 0.92533 0.88077 0.93260 0.87242 1.46060 1.10815 1.25113 1.54124 1.20459 0.89499 0.81578 0.78668 1.90710 1.16933 1.74309 1.60389 1.21682 0.98554 0.96413 1.01364 1.19877 0.94019 0.92664 1.00646 1.22363 1.03326 0.91899 0.96435 1.23494 0.99473 1.00617 0.96672 1.75123 1.18362 1.03867 1.15932 1.78310 1.11472 1.20990 0.95670 1.45159 1.31081 1.17598 1.17237 0.70707 1.23440 0.97280 0.97902 0.93904 1.22683 0.96226 1.00485 0.96550 1.22835 0.97545 0.98345 0.99030 1.22456 0.94152 1.00396 0.97594 0.93455 0.77881 0.92143 0.90168 0.76450 0.88050 0.89001 0.89468 0.87629 0.79078 0.89523 0.92116 0.91131 0.91838 0.92486 0.88348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.08 13.06 55.49 0.72 -26.35 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 21.81 29.55 -169.99 -5.02 16.78 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.24 -6.44 9.98 -15.06 -0.15 -6.59 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.71 -16.50 5.34 -52.99 -0.28 -16.78 16 10 C 0.18 3.34 4.35 -67.48 -0.29 3.04 16 11 H 0.08 1.48 8.12 -51.93 -0.42 1.05 16 12 C -0.17 -2.89 7.68 -25.75 -0.20 -3.08 16 13 C 0.14 1.98 4.08 -67.48 -0.28 1.70 16 14 H 0.11 1.59 7.54 -51.93 -0.39 1.20 16 15 N -0.71 -7.77 5.31 -53.37 -0.28 -8.05 16 16 C 0.51 5.44 7.83 -10.99 -0.09 5.35 16 17 O -0.55 -7.79 15.62 5.56 0.09 -7.71 16 18 C -0.14 -0.90 5.68 -27.88 -0.16 -1.06 16 19 C -0.03 -0.20 5.07 -27.88 -0.14 -0.34 16 20 C -0.01 -0.04 6.56 -82.09 -0.54 -0.58 16 21 C -0.05 -0.38 11.99 -17.74 -0.21 -0.59 16 22 N -0.27 -3.00 12.41 30.23 0.38 -2.63 16 23 N -0.08 -0.87 13.38 60.35 0.81 -0.06 16 24 N -0.39 -2.62 6.98 33.54 0.23 -2.39 16 25 H 0.45 1.41 8.96 -190.41 -1.71 -0.30 16 26 C -0.12 -1.78 1.06 -154.71 -0.16 -1.94 16 27 C -0.12 -1.62 7.84 -26.28 -0.21 -1.83 16 28 C -0.14 -1.64 8.08 -25.75 -0.21 -1.85 16 29 C -0.11 -1.49 6.77 -26.28 -0.18 -1.67 16 30 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.39 9.45 6.12 -40.82 -0.25 9.20 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 34 H 0.40 3.71 6.68 -40.82 -0.27 3.44 16 35 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.52 8.10 -51.93 -0.42 0.10 16 38 H 0.11 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.19 1.11 8.06 -52.48 -0.42 0.69 16 40 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.69 6.43 -51.93 -0.33 0.35 16 45 H 0.10 1.64 6.96 -51.93 -0.36 1.28 16 LS Contribution 371.78 15.07 5.60 5.60 Total: -1.00 -33.18 371.78 -8.59 -41.77 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -7.93 Total: 9.68 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -2.91 Total: -9.87 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: 1.57 Total: -56.26 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: 0.09 Total: -7.71 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.18 -8.59 -41.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203409882.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.004 kcal (2) G-P(sol) polarization free energy of solvation -33.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds