Wall clock time and date at job start Fri Apr 10 2020 18:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99634 * 2 1 4 4 H 1.48499 * 109.47123 * 270.00119 * 3 2 1 5 5 H 1.48502 * 109.47145 * 30.00094 * 3 2 1 6 6 H 1.48497 * 109.46894 * 149.99990 * 3 2 1 7 7 C 1.37873 * 120.00341 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99606 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99970 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47236 * 179.97438 * 9 7 2 11 11 N 1.46494 * 109.47480 * 180.02562 * 10 9 7 12 12 C 1.46900 * 124.37649 * 272.03394 * 11 10 9 13 13 C 1.54751 * 105.52818 * 196.76618 * 12 11 10 14 14 C 1.53432 * 101.46175 * 335.63192 * 13 12 11 15 15 C 1.53720 * 111.11442 * 262.31236 * 14 13 12 16 16 C 1.54815 * 102.78228 * 203.56691 * 15 14 13 17 17 C 1.54076 * 105.20279 * 20.77508 * 16 15 14 18 18 N 1.47185 * 111.49216 * 145.74674 * 14 13 12 19 19 C 1.46903 * 111.00027 * 278.29021 * 18 14 13 20 20 C 1.50705 * 109.46938 * 176.65343 * 19 18 14 21 21 C 1.35345 * 126.91003 * 265.23829 * 20 19 18 22 22 N 1.33771 * 106.49561 * 179.91061 * 21 20 19 23 23 N 1.28638 * 108.88402 * 0.36320 * 22 21 20 24 24 N 1.28706 * 110.17834 * 359.77128 * 23 22 21 25 25 H 0.97002 * 125.87095 * 179.97438 * 24 23 22 26 26 C 1.34813 * 124.37902 * 92.00254 * 11 10 9 27 27 O 1.21283 * 125.16490 * 358.89145 * 26 11 10 28 28 H 0.96996 * 120.00559 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47009 * 60.00013 * 9 7 2 30 30 H 1.08996 * 109.47614 * 300.00140 * 9 7 2 31 31 H 1.09000 * 109.46722 * 59.99676 * 10 9 7 32 32 H 1.09004 * 109.46957 * 300.00218 * 10 9 7 33 33 H 1.08998 * 110.23745 * 315.77952 * 12 11 10 34 34 H 1.09002 * 110.23748 * 77.75022 * 12 11 10 35 35 H 1.08999 * 111.02723 * 217.58707 * 13 12 11 36 36 H 1.09001 * 111.02868 * 93.67519 * 13 12 11 37 37 H 1.08999 * 110.75096 * 85.24146 * 15 14 13 38 38 H 1.08997 * 110.74710 * 321.88494 * 15 14 13 39 39 H 1.09001 * 110.28866 * 261.84847 * 16 15 14 40 40 H 1.08994 * 110.38146 * 139.75071 * 16 15 14 41 41 H 1.08999 * 109.90383 * 241.69697 * 17 16 15 42 42 H 1.09005 * 109.90148 * 120.45551 * 17 16 15 43 43 H 1.08998 * 109.46574 * 56.65729 * 19 18 14 44 44 H 1.08995 * 109.46958 * 296.64985 * 19 18 14 45 45 H 1.08005 * 126.75603 * 0.04155 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 7 5.4867 -2.6363 -0.0009 12 6 6.3161 -2.5934 -1.2126 13 6 7.7284 -3.0396 -0.7639 14 6 7.6989 -2.6888 0.7295 15 6 8.3707 -1.3315 0.9928 16 6 8.7891 -1.4390 2.4794 17 6 8.8255 -2.9496 2.7806 18 7 8.4740 -3.6540 1.5256 19 6 7.6850 -4.8617 1.8029 20 6 8.5364 -5.8580 2.5470 21 6 9.2480 -6.8781 2.0132 22 7 9.8490 -7.4976 3.0352 23 7 9.5245 -6.9053 4.1300 24 7 8.7384 -5.9164 3.8837 25 1 8.3561 -5.3163 4.5429 26 6 6.2479 -2.6751 1.1110 27 8 5.8241 -2.6956 2.2473 28 1 -0.4851 0.8400 0.0004 29 1 3.8752 -0.6802 0.8888 30 1 3.8746 -0.6798 -0.8911 31 1 3.6580 -3.1504 -0.8907 32 1 3.6587 -3.1500 0.8893 33 1 5.9241 -3.2805 -1.9624 34 1 6.3499 -1.5792 -1.6106 35 1 8.5011 -2.4731 -1.2836 36 1 7.8653 -4.1109 -0.9113 37 1 7.6624 -0.5156 0.8490 38 1 9.2445 -1.2028 0.3541 39 1 8.0550 -0.9442 3.1154 40 1 9.7754 -0.9998 2.6289 41 1 8.0995 -3.1908 3.5571 42 1 9.8259 -3.2400 3.1015 43 1 7.3499 -5.3004 0.8630 44 1 6.8191 -4.5984 2.4103 45 1 9.3187 -7.1391 0.9675 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272570167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:39 Heat of formation + Delta-G solvation = 74.569702 kcal Electronic energy + Delta-G solvation = -27849.278301 eV Core-core repulsion = 24097.033095 eV Total energy + Delta-G solvation = -3752.245206 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.52312 -41.47647 -37.87909 -36.40439 -34.20797 -33.64997 -33.25177 -32.06201 -30.64812 -29.66164 -27.96997 -26.22251 -25.43219 -23.70305 -23.14678 -22.31722 -21.80665 -21.17908 -20.45001 -18.98442 -18.32768 -17.17563 -16.83377 -16.09931 -16.03377 -15.82484 -15.48563 -15.24002 -14.76830 -14.35378 -14.22811 -14.08229 -13.69695 -13.25066 -13.05193 -12.96895 -12.79420 -12.66458 -12.34408 -12.16473 -11.97745 -11.70710 -11.58543 -11.52207 -11.27778 -11.10667 -10.99309 -10.88195 -10.78417 -10.58829 -10.15544 -10.12470 -9.90603 -9.48618 -9.38094 -8.65402 -8.61133 -8.32706 -6.15408 -4.15205 1.29729 2.33868 2.49351 2.56950 3.20736 3.21553 3.30291 3.33875 3.57890 4.02456 4.18306 4.31835 4.35233 4.38056 4.46394 4.66025 4.75442 4.83644 4.86540 4.97722 5.13207 5.18469 5.23643 5.29276 5.33954 5.47505 5.48574 5.53889 5.65517 5.69138 5.74673 5.79982 5.85031 5.91056 5.92045 6.15825 6.41698 6.44542 6.46597 6.57719 6.64344 7.01010 7.19024 7.42576 7.64209 8.22785 8.28178 8.38671 8.87090 9.46026 10.97610 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.020322 B = 0.003313 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.509059 B = 8448.614883 C = 8749.977454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.071 3.929 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.524 4.524 8 H 0.074 0.926 9 C -0.023 4.023 10 C 0.135 3.865 11 N -0.608 5.608 12 C 0.096 3.904 13 C -0.112 4.112 14 C 0.058 3.942 15 C -0.099 4.099 16 C -0.128 4.128 17 C 0.034 3.966 18 N -0.478 5.478 19 C 0.098 3.902 20 C 0.006 3.994 21 C -0.033 4.033 22 N -0.269 5.269 23 N -0.082 5.082 24 N -0.387 5.387 25 H 0.446 0.554 26 C 0.499 3.501 27 O -0.528 6.528 28 H 0.265 0.735 29 H 0.019 0.981 30 H 0.013 0.987 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.050 0.950 42 H 0.078 0.922 43 H 0.106 0.894 44 H 0.076 0.924 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.671 -6.549 -0.292 21.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.562 4.562 8 H 0.092 0.908 9 C -0.061 4.061 10 C 0.015 3.985 11 N -0.341 5.341 12 C -0.028 4.028 13 C -0.151 4.151 14 C -0.035 4.035 15 C -0.138 4.138 16 C -0.166 4.166 17 C -0.094 4.094 18 N -0.202 5.202 19 C -0.031 4.031 20 C -0.128 4.128 21 C -0.191 4.191 22 N -0.136 5.136 23 N -0.063 5.063 24 N -0.109 5.109 25 H 0.292 0.708 26 C 0.284 3.716 27 O -0.405 6.405 28 H 0.074 0.926 29 H 0.037 0.963 30 H 0.031 0.969 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.069 0.931 42 H 0.096 0.904 43 H 0.124 0.876 44 H 0.094 0.906 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 21.457 -7.545 1.032 22.768 hybrid contribution -1.373 2.240 -0.060 2.628 sum 20.084 -5.305 0.972 20.795 Atomic orbital electron populations 1.69898 1.06263 1.27079 1.50506 1.24977 0.94717 0.99139 0.94299 0.86775 0.80400 0.83638 0.78473 1.20193 1.21208 1.19175 1.20938 0.88828 0.94736 1.51702 0.90799 1.19874 0.97413 0.92127 0.96679 1.21641 0.74189 1.00329 1.02337 1.48742 1.07724 1.71166 1.06486 1.22228 0.89899 1.02357 0.88276 1.22508 0.96829 1.03280 0.92435 1.22158 0.91043 0.94595 0.95752 1.22266 1.00378 0.94206 0.96943 1.22412 1.02222 0.95388 0.96549 1.22969 1.00820 0.94041 0.91548 1.64860 1.36510 1.03366 1.15427 1.20961 0.93172 0.88747 1.00259 1.22013 1.04940 1.01783 0.84075 1.23376 0.99440 0.95548 1.00732 1.75100 1.20272 1.22970 0.95242 1.78282 1.08165 0.98866 1.20952 1.45176 1.33878 1.23883 1.07920 0.70816 1.20932 0.88906 0.76572 0.85200 1.90688 1.78624 1.50576 1.20613 0.92553 0.96298 0.96880 0.90821 0.90517 0.89958 0.90789 0.88620 0.89302 0.90232 0.89353 0.90755 0.90642 0.93117 0.90412 0.87570 0.90585 0.79201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.96 55.43 0.77 -26.42 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.52 -14.47 9.66 -34.44 -0.33 -14.80 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.02 -0.52 4.37 -27.88 -0.12 -0.64 16 10 C 0.14 2.52 5.90 -4.04 -0.02 2.50 16 11 N -0.61 -9.16 2.95 -172.55 -0.51 -9.66 16 12 C 0.10 1.01 7.37 -2.90 -0.02 0.99 16 13 C -0.11 -0.93 6.35 -25.59 -0.16 -1.09 16 14 C 0.06 0.62 0.55 -132.32 -0.07 0.55 16 15 C -0.10 -0.99 5.99 -25.40 -0.15 -1.14 16 16 C -0.13 -1.25 6.86 -25.21 -0.17 -1.42 16 17 C 0.03 0.33 5.42 -2.57 -0.01 0.32 16 18 N -0.48 -4.74 4.99 -219.44 -1.09 -5.84 16 19 C 0.10 0.98 4.49 -4.97 -0.02 0.96 16 20 C 0.01 0.06 6.22 -82.09 -0.51 -0.45 16 21 C -0.03 -0.34 11.99 -17.74 -0.21 -0.56 16 22 N -0.27 -3.46 12.41 30.23 0.38 -3.09 16 23 N -0.08 -1.01 13.38 60.35 0.81 -0.21 16 24 N -0.39 -3.81 6.83 33.54 0.23 -3.58 16 25 H 0.45 3.30 8.80 -190.41 -1.68 1.63 16 26 C 0.50 7.52 5.51 -11.29 -0.06 7.46 16 27 O -0.53 -9.79 15.35 5.55 0.09 -9.71 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.02 0.47 7.20 -51.93 -0.37 0.09 16 30 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.08 1.55 7.91 -51.93 -0.41 1.14 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.10 0.60 7.64 -51.93 -0.40 0.21 16 36 H 0.09 0.64 7.39 -51.93 -0.38 0.26 16 37 H 0.08 0.90 8.01 -51.93 -0.42 0.48 16 38 H 0.09 0.69 7.77 -51.93 -0.40 0.29 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.54 7.31 -51.93 -0.38 0.16 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.11 0.96 7.38 -51.93 -0.38 0.57 16 44 H 0.08 0.94 5.75 -51.93 -0.30 0.64 16 45 H 0.19 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 360.17 15.07 5.43 5.43 Total: -1.00 -34.13 360.17 -8.61 -42.75 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -8.06 Total: -0.97 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -1.98 Total: -5.39 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.58 Total: -48.80 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.13 -8.61 -42.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272570167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.316 kcal (2) G-P(sol) polarization free energy of solvation -34.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds