Wall clock time and date at job start Fri Apr 10 2020 18:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 120.00465 * 2 1 4 4 H 1.48496 * 109.47089 * 239.99777 * 3 2 1 5 5 H 1.48495 * 109.46952 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46766 * 119.99604 * 3 2 1 7 7 C 1.37878 * 119.99250 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99545 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00348 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47411 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47706 * 180.02562 * 10 9 7 12 12 C 1.46854 * 124.37026 * 270.00805 * 11 10 9 13 13 C 1.54636 * 105.50685 * 196.89569 * 12 11 10 14 14 C 1.53895 * 101.58982 * 335.23202 * 13 12 11 15 15 C 1.53597 * 110.35175 * 143.74502 * 14 13 12 16 16 C 1.55316 * 102.79673 * 143.23693 * 15 14 13 17 17 C 1.54974 * 101.74049 * 324.95994 * 16 15 14 18 18 N 1.46656 * 110.89852 * 263.45753 * 14 13 12 19 19 C 1.46897 * 111.00294 * 2.15879 * 18 14 13 20 20 C 1.50697 * 109.47155 * 169.99502 * 19 18 14 21 21 C 1.35352 * 126.91607 * 265.13290 * 20 19 18 22 22 N 1.33775 * 106.49643 * 180.24178 * 21 20 19 23 23 N 1.28639 * 108.88464 * 359.77851 * 22 21 20 24 24 N 1.28716 * 110.17998 * 359.97438 * 23 22 21 25 25 H 0.97001 * 125.86565 * 179.97438 * 24 23 22 26 26 C 1.34660 * 124.36777 * 90.02406 * 11 10 9 27 27 O 1.21278 * 125.07595 * 359.14819 * 26 11 10 28 28 H 0.96998 * 119.99229 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47078 * 60.00092 * 9 7 2 30 30 H 1.09003 * 109.47454 * 300.00596 * 9 7 2 31 31 H 1.09006 * 109.46697 * 60.00489 * 10 9 7 32 32 H 1.09003 * 109.47432 * 300.00774 * 10 9 7 33 33 H 1.09001 * 110.23277 * 315.90296 * 12 11 10 34 34 H 1.09003 * 110.24130 * 77.79653 * 12 11 10 35 35 H 1.09003 * 111.00255 * 217.15635 * 13 12 11 36 36 H 1.08996 * 111.00783 * 93.30318 * 13 12 11 37 37 H 1.08997 * 110.74959 * 261.56208 * 15 14 13 38 38 H 1.08998 * 110.75352 * 24.91213 * 15 14 13 39 39 H 1.09004 * 110.97333 * 83.07152 * 16 15 14 40 40 H 1.09004 * 110.97659 * 206.81010 * 16 15 14 41 41 H 1.09004 * 110.37190 * 277.82843 * 17 16 15 42 42 H 1.08999 * 110.36997 * 155.49672 * 17 16 15 43 43 H 1.09000 * 109.46821 * 49.99826 * 19 18 14 44 44 H 1.08996 * 109.47628 * 290.00101 * 19 18 14 45 45 H 1.08000 * 126.75115 * 0.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2494 1.6176 0.0000 4 1 3.1031 1.6962 -1.2124 5 1 1.2845 2.7464 -0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2450 -3.6622 0.0015 11 7 1.5125 -4.9309 0.0020 12 6 1.0983 -5.6486 1.2144 13 6 0.7681 -7.0865 0.7512 14 6 0.4224 -6.8620 -0.7315 15 6 0.9196 -8.0415 -1.5805 16 6 -0.1987 -8.1928 -2.6476 17 6 -1.4645 -7.8269 -1.8319 18 7 -1.0275 -6.7461 -0.9190 19 6 -1.7327 -6.8260 0.3672 20 6 -3.1812 -6.4606 0.1694 21 6 -3.7436 -5.2421 0.3452 22 7 -5.0442 -5.3798 0.0640 23 7 -5.2712 -6.6015 -0.2687 24 7 -4.1809 -7.2842 -0.2225 25 1 -4.0920 -8.2278 -0.4288 26 6 1.1323 -5.5896 -1.1093 27 8 1.3323 -5.2139 -2.2449 28 1 -0.4849 0.8401 -0.0004 29 1 0.6239 -2.5574 -0.8880 30 1 0.6245 -2.5563 0.8919 31 1 2.8723 -3.6041 0.8910 32 1 2.8711 -3.6049 -0.8890 33 1 1.9116 -5.6635 1.9400 34 1 0.2155 -5.1785 1.6479 35 1 -0.0877 -7.4855 1.2957 36 1 1.6346 -7.7394 0.8557 37 1 1.8732 -7.8032 -2.0517 38 1 1.0014 -8.9449 -0.9762 39 1 -0.0495 -7.4940 -3.4709 40 1 -0.2526 -9.2181 -3.0137 41 1 -1.8105 -8.6888 -1.2613 42 1 -2.2524 -7.4685 -2.4944 43 1 -1.2768 -6.1339 1.0751 44 1 -1.6641 -7.8417 0.7567 45 1 -3.2418 -4.3374 0.6553 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272570168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:42 Heat of formation + Delta-G solvation = 85.814403 kcal Electronic energy + Delta-G solvation = -27948.838291 eV Core-core repulsion = 24197.080692 eV Total energy + Delta-G solvation = -3751.757599 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.36582 -41.28419 -38.01532 -36.02575 -33.94868 -33.63384 -33.11072 -31.93417 -30.45561 -29.21156 -27.91998 -26.26024 -24.95641 -23.62980 -23.04407 -22.25384 -22.01086 -21.18005 -20.16436 -18.70772 -18.26582 -17.20384 -16.47928 -16.39248 -15.83599 -15.42769 -15.33184 -14.74412 -14.60420 -14.33695 -14.24878 -13.85667 -13.61796 -13.26312 -12.97557 -12.78139 -12.68547 -12.37541 -12.17007 -12.08770 -11.66510 -11.49137 -11.39739 -11.26365 -11.15045 -10.96962 -10.91292 -10.88453 -10.67886 -10.61724 -9.99117 -9.83775 -9.60235 -9.31292 -9.18487 -8.47725 -8.33625 -8.02871 -5.98722 -4.02612 1.40900 2.49945 2.61029 2.85421 3.34903 3.39495 3.40851 3.48115 3.87920 4.05674 4.10329 4.35318 4.46203 4.47818 4.52472 4.62991 4.71322 4.86754 4.88968 5.04165 5.12501 5.16830 5.29902 5.34713 5.37210 5.47702 5.50290 5.55426 5.63745 5.64965 5.78199 5.84944 6.00156 6.08012 6.18572 6.44813 6.56082 6.59355 6.71074 6.81959 6.99837 7.51137 7.69239 7.86832 8.01003 8.36424 8.39532 8.68721 9.03819 9.61359 11.12433 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.011910 B = 0.004179 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.359747 B = 6697.910553 C = 8251.912285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.014 3.986 10 C 0.129 3.871 11 N -0.609 5.609 12 C 0.103 3.897 13 C -0.164 4.164 14 C 0.071 3.929 15 C -0.118 4.118 16 C -0.126 4.126 17 C 0.041 3.959 18 N -0.496 5.496 19 C 0.117 3.883 20 C -0.007 4.007 21 C -0.019 4.019 22 N -0.264 5.264 23 N -0.085 5.085 24 N -0.392 5.392 25 H 0.442 0.558 26 C 0.538 3.462 27 O -0.519 6.519 28 H 0.262 0.738 29 H 0.022 0.978 30 H 0.017 0.983 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.044 0.956 42 H 0.082 0.918 43 H 0.116 0.884 44 H 0.057 0.943 45 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.572 -23.105 3.403 23.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.024 4.024 10 C 0.009 3.991 11 N -0.342 5.342 12 C -0.021 4.021 13 C -0.202 4.202 14 C -0.022 4.022 15 C -0.157 4.157 16 C -0.164 4.164 17 C -0.087 4.087 18 N -0.221 5.221 19 C -0.012 4.012 20 C -0.140 4.140 21 C -0.176 4.176 22 N -0.131 5.131 23 N -0.065 5.065 24 N -0.113 5.113 25 H 0.286 0.714 26 C 0.323 3.677 27 O -0.393 6.393 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.035 0.965 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.117 0.883 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.062 0.938 42 H 0.100 0.900 43 H 0.134 0.866 44 H 0.075 0.925 45 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -3.232 -22.069 2.320 22.424 hybrid contribution 1.747 -0.260 0.534 1.845 sum -1.485 -22.328 2.854 22.559 Atomic orbital electron populations 1.69963 1.06038 1.26815 1.50033 1.24984 0.94829 0.99195 0.95099 0.86642 0.79576 0.83091 0.78599 1.20192 1.21244 1.20238 1.21034 0.92926 0.90750 1.51669 0.92647 1.19380 0.94353 0.90856 0.97822 1.21821 0.95016 0.80943 1.01280 1.48526 1.56449 1.23409 1.05859 1.22049 1.00898 0.90451 0.88667 1.23366 1.03677 0.97976 0.95165 1.21933 0.88702 0.95901 0.95666 1.22618 1.00197 0.95989 0.96889 1.22730 0.93199 1.01966 0.98521 1.23217 0.98806 0.91441 0.95193 1.63199 1.01812 1.46206 1.10921 1.21010 0.86273 1.01225 0.92697 1.22060 0.92759 0.92017 1.07190 1.23581 0.90840 0.98290 1.04929 1.75146 1.15908 1.08047 1.14036 1.78267 1.08647 1.00004 1.19586 1.45080 1.06501 1.13260 1.46454 0.71359 1.19959 0.78374 0.84586 0.84830 1.90682 1.56748 1.70917 1.20964 0.92843 0.95928 0.96504 0.91705 0.91180 0.90339 0.90967 0.88334 0.89234 0.89782 0.90557 0.89546 0.90525 0.93805 0.89992 0.86589 0.92544 0.78766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.94 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.53 -14.78 9.11 -34.44 -0.31 -15.09 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.01 0.36 5.30 -27.89 -0.15 0.21 16 10 C 0.13 2.65 5.88 -4.04 -0.02 2.63 16 11 N -0.61 -10.38 2.94 -172.50 -0.51 -10.89 16 12 C 0.10 1.21 6.98 -2.99 -0.02 1.19 16 13 C -0.16 -1.40 5.51 -25.41 -0.14 -1.54 16 14 C 0.07 0.85 0.99 -132.20 -0.13 0.71 16 15 C -0.12 -1.15 5.85 -25.19 -0.15 -1.30 16 16 C -0.13 -1.19 7.08 -24.46 -0.17 -1.37 16 17 C 0.04 0.37 6.15 -2.13 -0.01 0.36 16 18 N -0.50 -5.77 4.84 -218.85 -1.06 -6.83 16 19 C 0.12 1.06 3.98 -4.98 -0.02 1.04 16 20 C -0.01 -0.07 6.32 -82.09 -0.52 -0.59 16 21 C -0.02 -0.26 11.99 -17.73 -0.21 -0.47 16 22 N -0.26 -4.14 12.41 30.24 0.38 -3.76 16 23 N -0.08 -1.15 13.38 60.35 0.81 -0.34 16 24 N -0.39 -3.80 6.91 33.54 0.23 -3.57 16 25 H 0.44 2.50 8.96 -190.40 -1.71 0.79 16 26 C 0.54 9.52 6.97 -11.13 -0.08 9.44 16 27 O -0.52 -11.54 17.43 5.56 0.10 -11.44 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.07 1.53 7.94 -51.93 -0.41 1.12 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.85 6.76 -51.93 -0.35 0.49 16 35 H 0.10 0.60 4.85 -51.93 -0.25 0.34 16 36 H 0.09 0.62 7.83 -51.93 -0.41 0.22 16 37 H 0.08 0.95 7.79 -51.93 -0.40 0.54 16 38 H 0.08 0.53 7.81 -51.93 -0.41 0.12 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.04 0.27 7.62 -51.93 -0.40 -0.13 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.12 1.08 5.06 -51.93 -0.26 0.81 16 44 H 0.06 0.33 6.80 -51.93 -0.35 -0.02 16 45 H 0.20 2.63 8.06 -52.49 -0.42 2.21 16 LS Contribution 362.15 15.07 5.46 5.46 Total: -1.00 -36.78 362.15 -8.79 -45.58 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -7.87 Total: -1.57 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -2.04 Total: -3.13 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: 0.58 Total: -51.60 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.10 Total: -11.44 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.78 -8.79 -45.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272570168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.393 kcal (2) G-P(sol) polarization free energy of solvation -36.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds