Wall clock time and date at job start Fri Apr 10 2020 18:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 120.00465 * 2 1 4 4 H 1.48496 * 109.47089 * 239.99777 * 3 2 1 5 5 H 1.48495 * 109.46952 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46766 * 119.99604 * 3 2 1 7 7 C 1.37878 * 119.99250 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99545 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00348 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47411 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47706 * 180.02562 * 10 9 7 12 12 C 1.46854 * 124.37026 * 270.00805 * 11 10 9 13 13 C 1.54636 * 105.50685 * 196.89569 * 12 11 10 14 14 C 1.53895 * 101.58982 * 335.23202 * 13 12 11 15 15 C 1.53597 * 110.35175 * 143.74502 * 14 13 12 16 16 C 1.55316 * 102.79673 * 143.23693 * 15 14 13 17 17 C 1.54974 * 101.74049 * 324.95994 * 16 15 14 18 18 N 1.46656 * 110.89852 * 263.45753 * 14 13 12 19 19 C 1.46897 * 111.00294 * 2.15879 * 18 14 13 20 20 C 1.50697 * 109.47155 * 169.99502 * 19 18 14 21 21 C 1.35352 * 126.91607 * 265.13290 * 20 19 18 22 22 N 1.33775 * 106.49643 * 180.24178 * 21 20 19 23 23 N 1.28639 * 108.88464 * 359.77851 * 22 21 20 24 24 N 1.28716 * 110.17998 * 359.97438 * 23 22 21 25 25 H 0.97001 * 125.86565 * 179.97438 * 24 23 22 26 26 C 1.34660 * 124.36777 * 90.02406 * 11 10 9 27 27 O 1.21278 * 125.07595 * 359.14819 * 26 11 10 28 28 H 0.96998 * 119.99229 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47078 * 60.00092 * 9 7 2 30 30 H 1.09003 * 109.47454 * 300.00596 * 9 7 2 31 31 H 1.09006 * 109.46697 * 60.00489 * 10 9 7 32 32 H 1.09003 * 109.47432 * 300.00774 * 10 9 7 33 33 H 1.09001 * 110.23277 * 315.90296 * 12 11 10 34 34 H 1.09003 * 110.24130 * 77.79653 * 12 11 10 35 35 H 1.09003 * 111.00255 * 217.15635 * 13 12 11 36 36 H 1.08996 * 111.00783 * 93.30318 * 13 12 11 37 37 H 1.08997 * 110.74959 * 261.56208 * 15 14 13 38 38 H 1.08998 * 110.75352 * 24.91213 * 15 14 13 39 39 H 1.09004 * 110.97333 * 83.07152 * 16 15 14 40 40 H 1.09004 * 110.97659 * 206.81010 * 16 15 14 41 41 H 1.09004 * 110.37190 * 277.82843 * 17 16 15 42 42 H 1.08999 * 110.36997 * 155.49672 * 17 16 15 43 43 H 1.09000 * 109.46821 * 49.99826 * 19 18 14 44 44 H 1.08996 * 109.47628 * 290.00101 * 19 18 14 45 45 H 1.08000 * 126.75115 * 0.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2494 1.6176 0.0000 4 1 3.1031 1.6962 -1.2124 5 1 1.2845 2.7464 -0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2450 -3.6622 0.0015 11 7 1.5125 -4.9309 0.0020 12 6 1.0983 -5.6486 1.2144 13 6 0.7681 -7.0865 0.7512 14 6 0.4224 -6.8620 -0.7315 15 6 0.9196 -8.0415 -1.5805 16 6 -0.1987 -8.1928 -2.6476 17 6 -1.4645 -7.8269 -1.8319 18 7 -1.0275 -6.7461 -0.9190 19 6 -1.7327 -6.8260 0.3672 20 6 -3.1812 -6.4606 0.1694 21 6 -3.7436 -5.2421 0.3452 22 7 -5.0442 -5.3798 0.0640 23 7 -5.2712 -6.6015 -0.2687 24 7 -4.1809 -7.2842 -0.2225 25 1 -4.0920 -8.2278 -0.4288 26 6 1.1323 -5.5896 -1.1093 27 8 1.3323 -5.2139 -2.2449 28 1 -0.4849 0.8401 -0.0004 29 1 0.6239 -2.5574 -0.8880 30 1 0.6245 -2.5563 0.8919 31 1 2.8723 -3.6041 0.8910 32 1 2.8711 -3.6049 -0.8890 33 1 1.9116 -5.6635 1.9400 34 1 0.2155 -5.1785 1.6479 35 1 -0.0877 -7.4855 1.2957 36 1 1.6346 -7.7394 0.8557 37 1 1.8732 -7.8032 -2.0517 38 1 1.0014 -8.9449 -0.9762 39 1 -0.0495 -7.4940 -3.4709 40 1 -0.2526 -9.2181 -3.0137 41 1 -1.8105 -8.6888 -1.2613 42 1 -2.2524 -7.4685 -2.4944 43 1 -1.2768 -6.1339 1.0751 44 1 -1.6641 -7.8417 0.7567 45 1 -3.2418 -4.3374 0.6553 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272570168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:41 Heat of formation + Delta-G solvation = 56.308690 kcal Electronic energy + Delta-G solvation = -27950.117755 eV Core-core repulsion = 24197.080692 eV Total energy + Delta-G solvation = -3753.037063 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.33177 -42.28583 -39.16494 -37.39154 -35.55088 -34.82179 -34.04969 -33.50716 -31.39014 -30.76824 -28.87663 -27.32675 -26.59451 -24.59044 -24.08416 -23.58802 -23.10322 -22.18496 -21.35758 -19.88548 -19.16245 -18.67527 -18.06113 -17.34826 -17.02176 -16.61424 -16.51122 -16.24542 -15.72144 -15.52930 -15.35494 -14.85478 -14.78142 -14.46027 -14.26322 -14.20881 -13.80297 -13.59084 -13.52525 -13.07098 -12.88319 -12.81717 -12.68962 -12.44716 -12.31459 -12.21353 -12.00742 -11.93738 -11.86241 -11.70793 -11.63421 -11.59894 -11.39025 -10.80657 -10.57544 -10.27994 -9.50999 -9.32439 -8.21455 -6.34634 0.48870 1.38984 1.42735 1.43432 1.50944 1.63554 1.83245 2.19334 2.42711 2.99427 3.11928 3.24507 3.29587 3.56980 3.61336 3.74715 3.86884 3.94278 4.02441 4.20134 4.27974 4.35339 4.35791 4.41859 4.47654 4.60982 4.63553 4.66586 4.78557 4.80655 4.89130 4.91881 4.97972 5.05265 5.11647 5.14583 5.29576 5.36941 5.48760 5.62954 5.78574 5.85217 5.93085 6.01530 6.18263 6.38964 6.81231 7.32300 7.35873 7.39188 8.90098 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.011910 B = 0.004179 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.359747 B = 6697.910553 C = 8251.912285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.257 1.257 7 C -0.546 4.546 8 H 0.066 0.934 9 C 0.028 3.972 10 C 0.143 3.857 11 N -0.617 5.617 12 C 0.090 3.910 13 C -0.143 4.143 14 C 0.081 3.919 15 C -0.112 4.112 16 C -0.127 4.127 17 C 0.043 3.957 18 N -0.536 5.536 19 C 0.118 3.882 20 C 0.018 3.982 21 C -0.053 4.053 22 N -0.305 5.305 23 N -0.101 5.101 24 N -0.364 5.364 25 H 0.463 0.537 26 C 0.516 3.484 27 O -0.584 6.584 28 H 0.263 0.737 29 H -0.033 1.033 30 H 0.002 0.998 31 H 0.092 0.908 32 H 0.048 0.952 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.137 0.863 36 H 0.119 0.881 37 H 0.060 0.940 38 H 0.125 0.875 39 H 0.041 0.959 40 H 0.110 0.890 41 H 0.093 0.907 42 H 0.062 0.938 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.406 -26.505 5.597 27.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.182 1.182 7 C -0.585 4.585 8 H 0.084 0.916 9 C -0.010 4.010 10 C 0.021 3.979 11 N -0.349 5.349 12 C -0.032 4.032 13 C -0.180 4.180 14 C -0.012 4.012 15 C -0.151 4.151 16 C -0.165 4.165 17 C -0.083 4.083 18 N -0.262 5.262 19 C -0.011 4.011 20 C -0.118 4.118 21 C -0.211 4.211 22 N -0.171 5.171 23 N -0.082 5.082 24 N -0.089 5.089 25 H 0.312 0.688 26 C 0.303 3.697 27 O -0.463 6.463 28 H 0.072 0.928 29 H -0.014 1.014 30 H 0.020 0.980 31 H 0.111 0.889 32 H 0.066 0.934 33 H 0.121 0.879 34 H 0.088 0.912 35 H 0.155 0.845 36 H 0.138 0.862 37 H 0.078 0.922 38 H 0.143 0.857 39 H 0.060 0.940 40 H 0.128 0.872 41 H 0.111 0.889 42 H 0.080 0.920 43 H 0.132 0.868 44 H 0.129 0.871 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.081 -25.536 4.550 26.021 hybrid contribution 1.373 0.819 -0.208 1.612 sum -0.708 -24.717 4.342 25.105 Atomic orbital electron populations 1.70122 1.07980 1.27875 1.51102 1.25999 0.95713 1.03495 0.94423 0.85469 0.78241 0.77805 0.79352 1.19646 1.20979 1.18182 1.21532 0.93707 0.91899 1.51341 0.91565 1.19160 0.94471 0.93100 0.94305 1.21330 0.93788 0.81287 1.01463 1.48642 1.55775 1.22247 1.08242 1.22461 1.01699 0.92084 0.86963 1.23457 1.06406 0.95992 0.92192 1.21750 0.88288 0.92845 0.98365 1.22675 0.98788 0.96640 0.96992 1.22716 0.93620 1.02689 0.97437 1.23254 0.97944 0.92168 0.94977 1.62873 1.01982 1.48630 1.12744 1.21196 0.84048 1.04168 0.91674 1.22208 0.93751 0.90840 1.04953 1.23654 0.90972 0.99614 1.06883 1.75092 1.17094 1.09352 1.15601 1.78165 1.09964 0.99711 1.20323 1.45005 1.05271 1.14032 1.44562 0.68789 1.21321 0.77776 0.86661 0.83928 1.90626 1.58995 1.73103 1.23579 0.92800 1.01427 0.97990 0.88934 0.93380 0.87901 0.91237 0.84510 0.86224 0.92151 0.85728 0.93973 0.87168 0.88932 0.91987 0.86850 0.87063 0.79969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.67 13.29 21.45 0.28 -58.39 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.55 -31.75 9.11 25.60 0.23 -31.51 16 8 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 9 C 0.03 1.52 5.30 29.85 0.16 1.68 16 10 C 0.14 6.09 5.88 86.38 0.51 6.60 16 11 N -0.62 -21.24 2.94 -818.11 -2.41 -23.65 16 12 C 0.09 1.88 6.98 86.87 0.61 2.48 16 13 C -0.14 -1.72 5.51 31.45 0.17 -1.55 16 14 C 0.08 1.72 0.99 3.27 0.00 1.73 16 15 C -0.11 -1.83 5.85 31.59 0.18 -1.65 16 16 C -0.13 -2.14 7.08 32.06 0.23 -1.91 16 17 C 0.04 0.66 6.15 86.75 0.53 1.19 16 18 N -0.54 -11.30 4.84 -846.31 -4.10 -15.40 16 19 C 0.12 1.68 3.98 85.56 0.34 2.02 16 20 C 0.02 0.35 6.32 41.35 0.26 0.61 16 21 C -0.05 -1.52 11.99 83.73 1.00 -0.51 16 22 N -0.30 -9.84 12.41 -58.25 -0.72 -10.56 16 23 N -0.10 -2.68 13.38 37.02 0.50 -2.19 16 24 N -0.36 -6.19 6.91 -47.79 -0.33 -6.52 16 25 H 0.46 3.34 8.96 -219.96 -1.97 1.37 16 26 C 0.52 18.78 6.97 87.62 0.61 19.40 16 27 O -0.58 -28.05 17.43 -3.02 -0.05 -28.10 16 28 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 29 H -0.03 -2.13 8.14 -2.39 -0.02 -2.15 16 30 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.09 3.38 8.14 -2.38 -0.02 3.36 16 32 H 0.05 2.22 7.94 -2.39 -0.02 2.20 16 33 H 0.10 1.67 8.14 -2.39 -0.02 1.66 16 34 H 0.07 1.50 6.76 -2.39 -0.02 1.49 16 35 H 0.14 0.65 4.85 -2.39 -0.01 0.64 16 36 H 0.12 0.84 7.83 -2.39 -0.02 0.82 16 37 H 0.06 1.29 7.79 -2.39 -0.02 1.28 16 38 H 0.12 0.88 7.81 -2.39 -0.02 0.86 16 39 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.09 0.53 7.62 -2.38 -0.02 0.51 16 42 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.11 1.74 5.06 -2.39 -0.01 1.73 16 44 H 0.11 0.45 6.80 -2.39 -0.02 0.43 16 45 H 0.18 5.45 8.06 -2.91 -0.02 5.42 16 Total: -1.00 -91.03 362.15 -0.45 -91.49 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -0.95 Total: 6.98 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 5.31 Total: -0.86 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -6.78 Total: -116.71 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.05 Total: -28.10 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -91.03 -0.45 -91.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272570168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.794 kcal (2) G-P(sol) polarization free energy of solvation -91.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds