Wall clock time and date at job start Fri Apr 10 2020 18:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99676 * 2 1 4 4 H 1.48495 * 109.47226 * 270.00279 * 3 2 1 5 5 H 1.48496 * 109.46911 * 30.00550 * 3 2 1 6 6 H 1.48503 * 109.46863 * 150.00131 * 3 2 1 7 7 C 1.37875 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99981 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00245 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47521 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.47187 * 179.97438 * 10 9 7 12 12 C 1.33339 * 117.29107 * 269.98111 * 11 10 9 13 13 O 1.21280 * 118.80502 * 359.82353 * 12 11 10 14 14 C 1.50351 * 122.39871 * 179.80517 * 12 11 10 15 15 C 1.52889 * 109.30596 * 338.33870 * 14 12 11 16 16 C 1.53118 * 109.33118 * 52.85307 * 15 14 12 17 17 H 1.08999 * 111.90775 * 59.70574 * 16 15 14 18 18 C 1.44640 * 117.28408 * 90.00403 * 11 10 9 19 19 H 1.08997 * 110.33446 * 45.53289 * 18 11 10 20 20 C 1.54879 * 110.63322 * 283.04956 * 18 11 10 21 21 C 1.54520 * 102.59554 * 203.33446 * 20 18 11 22 22 N 1.47661 * 107.05109 * 22.99819 * 21 20 18 23 23 C 1.46900 * 111.00145 * 123.12345 * 22 21 20 24 24 C 1.50707 * 109.47168 * 69.86965 * 23 22 21 25 25 N 1.33236 * 125.52555 * 269.95965 * 24 23 22 26 26 C 1.30839 * 109.82829 * 180.02562 * 25 24 23 27 27 N 1.34432 * 108.07342 * 0.02562 * 26 25 24 28 28 H 0.97005 * 126.81819 * 180.25953 * 27 26 25 29 29 N 1.30707 * 125.52314 * 89.99919 * 24 23 22 30 30 H 0.96997 * 120.00121 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47039 * 59.99727 * 9 7 2 32 32 H 1.09004 * 109.47479 * 300.00549 * 9 7 2 33 33 H 1.09000 * 109.47097 * 60.00425 * 10 9 7 34 34 H 1.08996 * 109.47411 * 300.00484 * 10 9 7 35 35 H 1.09002 * 109.49850 * 98.29002 * 14 12 11 36 36 H 1.09006 * 109.49452 * 218.35328 * 14 12 11 37 37 H 1.08996 * 109.49220 * 172.81334 * 15 14 12 38 38 H 1.08998 * 109.49015 * 292.86901 * 15 14 12 39 39 H 1.09003 * 110.78581 * 85.05598 * 20 18 11 40 40 H 1.09008 * 110.78350 * 321.61531 * 20 18 11 41 41 H 1.08997 * 109.91700 * 263.64732 * 21 20 18 42 42 H 1.09003 * 110.08069 * 142.44002 * 21 20 18 43 43 H 1.09004 * 109.47254 * 309.87269 * 23 22 21 44 44 H 1.09000 * 109.47145 * 189.87095 * 23 22 21 45 45 H 1.08001 * 125.96093 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 7 5.4866 -2.6364 -0.0022 12 6 6.0970 -2.6372 -1.1876 13 8 5.4197 -2.6412 -2.1937 14 6 7.5945 -2.6329 -1.3227 15 6 8.2167 -2.0954 -0.0337 16 6 7.6681 -2.8817 1.1601 17 1 7.8925 -3.9456 1.0841 18 6 6.1507 -2.6359 1.2828 19 1 5.6886 -3.3651 1.9482 20 6 6.1104 -1.2237 1.9174 21 6 7.3115 -1.2566 2.8891 22 7 8.2373 -2.2969 2.3981 23 6 9.5732 -1.7384 2.1505 24 6 10.2227 -1.3882 3.4646 25 7 10.1307 -0.2125 4.0846 26 6 10.8129 -0.2448 5.2006 27 7 11.3650 -1.4650 5.3169 28 1 11.9228 -1.7838 6.0436 29 7 10.9682 -2.1884 4.1804 30 1 -0.4850 0.8400 0.0004 31 1 3.8752 -0.6803 0.8888 32 1 3.8746 -0.6799 -0.8911 33 1 3.6580 -3.1505 -0.8908 34 1 3.6586 -3.1501 0.8891 35 1 7.9466 -3.6490 -1.5006 36 1 7.8824 -1.9962 -2.1594 37 1 9.2998 -2.2094 -0.0777 38 1 7.9661 -1.0406 0.0788 39 1 5.1778 -1.0701 2.4603 40 1 6.2483 -0.4542 1.1578 41 1 6.9699 -1.5075 3.8933 42 1 7.8120 -0.2884 2.8983 43 1 9.4841 -0.8407 1.5387 44 1 10.1839 -2.4749 1.6283 45 1 10.9148 0.5673 5.9054 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274356526.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:57 Heat of formation + Delta-G solvation = 71.538832 kcal Electronic energy + Delta-G solvation = -27675.646066 eV Core-core repulsion = 23923.269432 eV Total energy + Delta-G solvation = -3752.376634 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.42195 -41.01884 -38.60817 -35.55259 -33.99131 -33.09563 -32.73111 -31.99599 -30.75389 -29.67059 -28.25074 -26.33920 -25.21320 -23.61941 -23.16708 -21.84245 -21.51574 -20.47312 -19.90733 -18.62776 -18.07399 -16.93677 -16.65304 -16.36520 -16.13132 -15.50657 -15.37631 -15.10311 -14.65183 -14.35285 -14.18453 -13.79127 -13.45164 -13.36653 -12.77400 -12.68320 -12.60420 -12.46755 -12.37606 -12.00472 -11.85259 -11.70053 -11.37198 -11.31128 -10.97040 -10.87576 -10.67079 -10.45461 -10.35280 -10.25812 -10.03120 -9.97671 -9.77746 -9.33065 -9.07229 -8.56322 -8.49838 -8.17695 -6.01636 -3.99395 1.28105 2.32029 2.50316 2.99676 3.33307 3.34195 3.40759 3.43542 3.69904 3.96901 4.27119 4.36311 4.48140 4.51684 4.63834 4.71243 4.74052 5.06741 5.12567 5.15786 5.23903 5.28795 5.30901 5.33692 5.41831 5.63849 5.67310 5.75965 5.84585 5.90308 5.97984 6.04969 6.10388 6.19431 6.24493 6.43693 6.63219 6.67047 6.69436 6.74206 6.80947 7.32811 7.40203 7.76420 7.80512 7.95916 8.53191 8.59819 9.02491 9.60795 11.11773 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015406 B = 0.003643 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.065258 B = 7684.777648 C = 8845.378082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.069 3.931 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.517 4.517 8 H 0.073 0.927 9 C -0.022 4.022 10 C 0.117 3.883 11 N -0.592 5.592 12 C 0.510 3.490 13 O -0.545 6.545 14 C -0.132 4.132 15 C -0.152 4.152 16 C 0.071 3.929 17 H 0.107 0.893 18 C 0.145 3.855 19 H 0.098 0.902 20 C -0.155 4.155 21 C 0.041 3.959 22 N -0.516 5.516 23 C 0.141 3.859 24 C 0.238 3.762 25 N -0.539 5.539 26 C 0.260 3.740 27 N -0.487 5.487 28 H 0.441 0.559 29 N -0.300 5.300 30 H 0.263 0.737 31 H 0.020 0.980 32 H 0.014 0.986 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.099 0.901 45 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.703 -3.018 11.107 29.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.555 4.555 8 H 0.091 0.909 9 C -0.060 4.060 10 C -0.004 4.004 11 N -0.323 5.323 12 C 0.297 3.703 13 O -0.422 6.422 14 C -0.172 4.172 15 C -0.191 4.191 16 C -0.037 4.037 17 H 0.125 0.875 18 C 0.039 3.961 19 H 0.116 0.884 20 C -0.194 4.194 21 C -0.087 4.087 22 N -0.240 5.240 23 C 0.010 3.990 24 C -0.045 4.045 25 N -0.267 5.267 26 C -0.039 4.039 27 N -0.205 5.205 28 H 0.286 0.714 29 N -0.129 5.129 30 H 0.073 0.927 31 H 0.038 0.962 32 H 0.033 0.967 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.117 0.883 45 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 26.235 -3.734 10.592 28.538 hybrid contribution 0.702 1.698 0.350 1.870 sum 26.937 -2.036 10.942 29.146 Atomic orbital electron populations 1.69909 1.06247 1.26844 1.51198 1.24967 0.94683 0.99043 0.94530 0.86784 0.80245 0.83717 0.78553 1.20331 1.21433 1.19116 1.20989 0.89092 0.94589 1.50854 0.90913 1.19889 0.97174 0.92271 0.96662 1.21734 0.75837 1.00489 1.02372 1.47139 1.08936 1.71802 1.04434 1.20018 0.90399 0.76706 0.83141 1.90749 1.66086 1.49968 1.35446 1.21592 0.92451 1.04000 0.99176 1.22328 1.01107 1.01080 0.94539 1.22857 0.93308 0.99811 0.87760 0.87498 1.21580 0.91560 0.97780 0.85188 0.88440 1.23366 0.99447 0.97420 0.99188 1.22972 0.92415 0.94322 0.98960 1.63776 1.01129 1.31227 1.27909 1.20506 0.90376 1.00021 0.88051 1.24089 0.95469 0.87204 0.97731 1.70436 1.24420 1.24426 1.07424 1.26099 0.91970 0.89605 0.96248 1.48182 1.41451 1.10930 1.19962 0.71391 1.78037 1.19748 1.18694 0.96441 0.92746 0.96231 0.96727 0.90048 0.91338 0.88492 0.88332 0.90100 0.90682 0.89271 0.90664 0.90433 0.91026 0.91033 0.88263 0.76233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.31 13.96 55.43 0.77 -27.54 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 22.40 27.47 -169.99 -4.67 17.73 16 4 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 7 C -0.52 -14.98 9.66 -34.44 -0.33 -15.32 16 8 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 9 C -0.02 -0.53 4.14 -27.89 -0.12 -0.65 16 10 C 0.12 2.41 5.06 -4.04 -0.02 2.39 16 11 N -0.59 -9.96 2.51 -166.16 -0.42 -10.38 16 12 C 0.51 8.80 7.47 -11.79 -0.09 8.71 16 13 O -0.54 -12.03 16.20 5.56 0.09 -11.94 16 14 C -0.13 -1.55 6.08 -28.11 -0.17 -1.72 16 15 C -0.15 -1.50 3.87 -26.73 -0.10 -1.61 16 16 C 0.07 0.75 3.49 -66.26 -0.23 0.52 16 17 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 18 C 0.14 1.94 3.19 -67.30 -0.21 1.72 16 19 H 0.10 1.26 8.01 -51.93 -0.42 0.85 16 20 C -0.15 -2.15 4.68 -24.94 -0.12 -2.26 16 21 C 0.04 0.48 6.38 -2.61 -0.02 0.47 16 22 N -0.52 -5.54 5.14 -224.52 -1.15 -6.70 16 23 C 0.14 1.36 3.97 -4.97 -0.02 1.34 16 24 C 0.24 2.57 7.08 -156.86 -1.11 1.46 16 25 N -0.54 -5.54 10.70 -11.97 -0.13 -5.67 16 26 C 0.26 1.66 13.13 -90.65 -1.19 0.47 16 27 N -0.49 -3.16 7.45 29.53 0.22 -2.94 16 28 H 0.44 1.19 8.96 -182.33 -1.63 -0.45 16 29 N -0.30 -3.15 12.80 32.42 0.41 -2.73 16 30 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 31 H 0.02 0.46 5.19 -51.93 -0.27 0.19 16 32 H 0.01 0.38 7.57 -51.93 -0.39 -0.01 16 33 H 0.08 1.85 7.13 -51.93 -0.37 1.48 16 34 H 0.07 1.31 7.90 -51.93 -0.41 0.90 16 35 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.08 0.60 6.37 -51.93 -0.33 0.27 16 38 H 0.07 0.84 6.53 -51.93 -0.34 0.50 16 39 H 0.09 1.35 7.42 -51.93 -0.39 0.96 16 40 H 0.07 1.16 7.38 -51.92 -0.38 0.77 16 41 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.07 0.87 6.89 -51.93 -0.36 0.51 16 43 H 0.07 0.68 6.75 -51.93 -0.35 0.33 16 44 H 0.10 0.82 7.27 -51.93 -0.38 0.45 16 45 H 0.22 0.32 8.06 -52.49 -0.42 -0.11 16 LS Contribution 350.94 15.07 5.29 5.29 Total: -1.00 -37.67 350.94 -11.13 -48.79 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -7.72 Total: -1.40 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -3.83 Total: -2.52 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: -0.29 Total: -55.96 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.09 Total: -11.94 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.67 Total: 17.73 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -37.67 -11.13 -48.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274356526.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.332 kcal (2) G-P(sol) polarization free energy of solvation -37.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds