Wall clock time and date at job start Fri Apr 10 2020 18:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99676 * 2 1 4 4 H 1.48495 * 109.47226 * 270.00279 * 3 2 1 5 5 H 1.48496 * 109.46911 * 30.00550 * 3 2 1 6 6 H 1.48503 * 109.46863 * 150.00131 * 3 2 1 7 7 C 1.37875 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99981 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00245 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47521 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.47187 * 179.97438 * 10 9 7 12 12 C 1.33339 * 117.29107 * 269.98111 * 11 10 9 13 13 O 1.21280 * 118.80502 * 359.82353 * 12 11 10 14 14 C 1.50351 * 122.39871 * 179.80517 * 12 11 10 15 15 C 1.52889 * 109.30596 * 338.33870 * 14 12 11 16 16 C 1.53118 * 109.33118 * 52.85307 * 15 14 12 17 17 H 1.08999 * 111.90775 * 59.70574 * 16 15 14 18 18 C 1.44640 * 117.28408 * 90.00403 * 11 10 9 19 19 H 1.08997 * 110.33446 * 45.53289 * 18 11 10 20 20 C 1.54879 * 110.63322 * 283.04956 * 18 11 10 21 21 C 1.54520 * 102.59554 * 203.33446 * 20 18 11 22 22 N 1.47661 * 107.05109 * 22.99819 * 21 20 18 23 23 C 1.46900 * 111.00145 * 123.12345 * 22 21 20 24 24 C 1.50707 * 109.47168 * 69.86965 * 23 22 21 25 25 N 1.33236 * 125.52555 * 269.95965 * 24 23 22 26 26 C 1.30839 * 109.82829 * 180.02562 * 25 24 23 27 27 N 1.34432 * 108.07342 * 0.02562 * 26 25 24 28 28 H 0.97005 * 126.81819 * 180.25953 * 27 26 25 29 29 N 1.30707 * 125.52314 * 89.99919 * 24 23 22 30 30 H 0.96997 * 120.00121 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47039 * 59.99727 * 9 7 2 32 32 H 1.09004 * 109.47479 * 300.00549 * 9 7 2 33 33 H 1.09000 * 109.47097 * 60.00425 * 10 9 7 34 34 H 1.08996 * 109.47411 * 300.00484 * 10 9 7 35 35 H 1.09002 * 109.49850 * 98.29002 * 14 12 11 36 36 H 1.09006 * 109.49452 * 218.35328 * 14 12 11 37 37 H 1.08996 * 109.49220 * 172.81334 * 15 14 12 38 38 H 1.08998 * 109.49015 * 292.86901 * 15 14 12 39 39 H 1.09003 * 110.78581 * 85.05598 * 20 18 11 40 40 H 1.09008 * 110.78350 * 321.61531 * 20 18 11 41 41 H 1.08997 * 109.91700 * 263.64732 * 21 20 18 42 42 H 1.09003 * 110.08069 * 142.44002 * 21 20 18 43 43 H 1.09004 * 109.47254 * 309.87269 * 23 22 21 44 44 H 1.09000 * 109.47145 * 189.87095 * 23 22 21 45 45 H 1.08001 * 125.96093 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 7 5.4866 -2.6364 -0.0022 12 6 6.0970 -2.6372 -1.1876 13 8 5.4197 -2.6412 -2.1937 14 6 7.5945 -2.6329 -1.3227 15 6 8.2167 -2.0954 -0.0337 16 6 7.6681 -2.8817 1.1601 17 1 7.8925 -3.9456 1.0841 18 6 6.1507 -2.6359 1.2828 19 1 5.6886 -3.3651 1.9482 20 6 6.1104 -1.2237 1.9174 21 6 7.3115 -1.2566 2.8891 22 7 8.2373 -2.2969 2.3981 23 6 9.5732 -1.7384 2.1505 24 6 10.2227 -1.3882 3.4646 25 7 10.1307 -0.2125 4.0846 26 6 10.8129 -0.2448 5.2006 27 7 11.3650 -1.4650 5.3169 28 1 11.9228 -1.7838 6.0436 29 7 10.9682 -2.1884 4.1804 30 1 -0.4850 0.8400 0.0004 31 1 3.8752 -0.6803 0.8888 32 1 3.8746 -0.6799 -0.8911 33 1 3.6580 -3.1505 -0.8908 34 1 3.6586 -3.1501 0.8891 35 1 7.9466 -3.6490 -1.5006 36 1 7.8824 -1.9962 -2.1594 37 1 9.2998 -2.2094 -0.0777 38 1 7.9661 -1.0406 0.0788 39 1 5.1778 -1.0701 2.4603 40 1 6.2483 -0.4542 1.1578 41 1 6.9699 -1.5075 3.8933 42 1 7.8120 -0.2884 2.8983 43 1 9.4841 -0.8407 1.5387 44 1 10.1839 -2.4749 1.6283 45 1 10.9148 0.5673 5.9054 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274356526.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:56 Heat of formation + Delta-G solvation = 43.622831 kcal Electronic energy + Delta-G solvation = -27676.856595 eV Core-core repulsion = 23923.269432 eV Total energy + Delta-G solvation = -3753.587163 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.01018 -42.14279 -39.81224 -36.98035 -35.38409 -34.44458 -33.90396 -32.79235 -32.04346 -31.05485 -29.24796 -27.17212 -27.01234 -24.74803 -23.72813 -23.33505 -22.33423 -22.10050 -20.68697 -19.37683 -19.12740 -18.80877 -17.89785 -17.52893 -17.14977 -16.61113 -16.34100 -16.12473 -15.93192 -15.56185 -15.30492 -15.04631 -14.82928 -14.61624 -14.53178 -14.03024 -13.66764 -13.56971 -13.31833 -13.10626 -13.02022 -12.93104 -12.80541 -12.51381 -12.32078 -12.17958 -11.97800 -11.88769 -11.68986 -11.59732 -11.45091 -11.04139 -10.97264 -10.80581 -10.67643 -10.53766 -9.66911 -9.38045 -8.33572 -6.37293 0.72834 1.29741 1.31536 1.42630 1.65477 1.81320 1.93095 2.10002 2.31143 2.95308 3.01632 3.26468 3.43560 3.52688 3.69168 3.74893 3.84290 4.10504 4.15982 4.23054 4.23801 4.33984 4.37810 4.42543 4.54768 4.58214 4.60518 4.76871 4.81656 4.85530 4.87647 4.91284 5.00211 5.07294 5.23124 5.28504 5.32641 5.38788 5.42456 5.46177 5.66339 5.80857 5.92460 6.21855 6.32669 6.60538 6.68954 7.19542 7.22526 7.27487 8.83155 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015406 B = 0.003643 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.065258 B = 7684.777648 C = 8845.378082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.010 3.990 3 Si 0.946 3.054 4 H -0.277 1.277 5 H -0.276 1.276 6 H -0.246 1.246 7 C -0.530 4.530 8 H 0.037 0.963 9 C -0.008 4.008 10 C 0.127 3.873 11 N -0.587 5.587 12 C 0.499 3.501 13 O -0.603 6.603 14 C -0.119 4.119 15 C -0.145 4.145 16 C 0.082 3.918 17 H 0.128 0.872 18 C 0.137 3.863 19 H 0.104 0.896 20 C -0.154 4.154 21 C 0.057 3.943 22 N -0.515 5.515 23 C 0.140 3.860 24 C 0.225 3.775 25 N -0.577 5.577 26 C 0.272 3.728 27 N -0.477 5.477 28 H 0.456 0.544 29 N -0.331 5.331 30 H 0.267 0.733 31 H 0.033 0.967 32 H -0.005 1.005 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.127 0.873 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.117 0.883 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.570 -2.404 12.618 33.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.187 4.187 3 Si 0.770 3.230 4 H -0.203 1.203 5 H -0.201 1.201 6 H -0.170 1.170 7 C -0.568 4.568 8 H 0.055 0.945 9 C -0.046 4.046 10 C 0.004 3.996 11 N -0.317 5.317 12 C 0.290 3.710 13 O -0.484 6.484 14 C -0.159 4.159 15 C -0.183 4.183 16 C -0.026 4.026 17 H 0.145 0.855 18 C 0.032 3.968 19 H 0.122 0.878 20 C -0.194 4.194 21 C -0.071 4.071 22 N -0.239 5.239 23 C 0.010 3.990 24 C -0.059 4.059 25 N -0.307 5.307 26 C -0.027 4.027 27 N -0.197 5.197 28 H 0.305 0.695 29 N -0.161 5.161 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.013 0.987 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.145 0.855 36 H 0.124 0.876 37 H 0.136 0.864 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.135 0.865 45 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 30.161 -3.142 12.164 32.673 hybrid contribution -0.534 1.459 -0.047 1.554 sum 29.627 -1.683 12.117 32.053 Atomic orbital electron populations 1.70046 1.08073 1.28179 1.52442 1.25902 0.95578 1.03173 0.94066 0.85725 0.79726 0.78813 0.78784 1.20288 1.20121 1.16977 1.21315 0.91534 0.93412 1.50543 0.94503 1.19710 0.94174 0.94732 0.96027 1.21297 0.78830 0.97797 1.01637 1.47117 1.07189 1.71303 1.06057 1.21151 0.92803 0.74970 0.82085 1.90724 1.67885 1.52524 1.37307 1.21605 0.87631 1.06149 1.00506 1.22337 1.03071 0.99990 0.92940 1.22864 0.90592 1.01085 0.88106 0.85456 1.21841 0.93792 0.97761 0.83385 0.87846 1.23280 0.99740 0.97198 0.99140 1.22762 0.91589 0.94682 0.98058 1.63808 1.01466 1.30809 1.27849 1.20587 0.89596 1.00580 0.88221 1.24224 0.95871 0.87565 0.98196 1.70421 1.26303 1.24834 1.09124 1.26945 0.89924 0.90161 0.95637 1.48123 1.41273 1.10809 1.19493 0.69511 1.77929 1.20463 1.19956 0.97788 0.92360 0.94892 0.98668 0.92804 0.90093 0.85530 0.87558 0.86432 0.91922 0.91007 0.92171 0.90805 0.91221 0.90798 0.86517 0.71831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.07 13.96 21.45 0.30 -60.77 16 2 C 0.01 0.61 5.47 84.65 0.46 1.08 16 3 Si 0.95 46.56 27.47 68.60 1.88 48.44 16 4 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 6 H -0.25 -11.20 6.54 99.48 0.65 -10.55 16 7 C -0.53 -31.92 9.66 25.60 0.25 -31.67 16 8 H 0.04 2.41 7.99 -2.91 -0.02 2.39 16 9 C -0.01 -0.41 4.14 29.85 0.12 -0.29 16 10 C 0.13 5.41 5.06 86.38 0.44 5.85 16 11 N -0.59 -19.57 2.51 -798.80 -2.00 -21.58 16 12 C 0.50 16.97 7.47 87.77 0.66 17.63 16 13 O -0.60 -27.23 16.20 -3.03 -0.05 -27.28 16 14 C -0.12 -2.45 6.08 29.70 0.18 -2.27 16 15 C -0.14 -2.36 3.87 30.60 0.12 -2.24 16 16 C 0.08 1.47 3.49 45.10 0.16 1.63 16 17 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 18 C 0.14 3.47 3.19 46.39 0.15 3.62 16 19 H 0.10 2.53 8.01 -2.39 -0.02 2.51 16 20 C -0.15 -4.12 4.68 31.75 0.15 -3.97 16 21 C 0.06 1.25 6.38 86.67 0.55 1.80 16 22 N -0.51 -9.65 5.14 -864.24 -4.45 -14.09 16 23 C 0.14 2.28 3.97 85.56 0.34 2.62 16 24 C 0.22 4.30 7.08 138.64 0.98 5.28 16 25 N -0.58 -10.48 10.70 -191.79 -2.05 -12.53 16 26 C 0.27 2.62 13.13 180.36 2.37 4.99 16 27 N -0.48 -4.88 7.45 -60.48 -0.45 -5.33 16 28 H 0.46 1.18 8.96 -213.09 -1.91 -0.73 16 29 N -0.33 -6.17 12.80 -51.33 -0.66 -6.82 16 30 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 31 H 0.03 1.56 5.19 -2.39 -0.01 1.54 16 32 H -0.01 -0.27 7.57 -2.39 -0.02 -0.29 16 33 H 0.05 2.58 7.13 -2.39 -0.02 2.56 16 34 H 0.08 3.18 7.90 -2.39 -0.02 3.16 16 35 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.11 2.11 8.14 -2.38 -0.02 2.09 16 37 H 0.12 1.16 6.37 -2.39 -0.02 1.14 16 38 H 0.06 1.23 6.53 -2.39 -0.02 1.21 16 39 H 0.07 2.15 7.42 -2.39 -0.02 2.13 16 40 H 0.06 1.80 7.38 -2.38 -0.02 1.78 16 41 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.07 1.58 6.89 -2.39 -0.02 1.56 16 43 H 0.07 1.18 6.75 -2.38 -0.02 1.16 16 44 H 0.12 1.46 7.27 -2.39 -0.02 1.45 16 45 H 0.27 -0.37 8.06 -2.91 -0.02 -0.39 16 Total: -1.00 -86.12 350.94 -1.50 -87.61 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -0.94 Total: 8.29 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 6.92 Total: 4.05 kcal Atomic # 7 Polarization: -111.81 SS G_CDS: -9.31 Total: -121.12 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.05 Total: -27.28 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.88 Total: 48.44 kcal Total: -86.12 -1.50 -87.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274356526.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.236 kcal (2) G-P(sol) polarization free energy of solvation -86.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds