Wall clock time and date at job start Fri Apr 10 2020 18:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 120.00264 * 2 1 4 4 H 1.48500 * 109.47185 * 240.00140 * 3 2 1 5 5 H 1.48504 * 109.46988 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47193 * 120.00105 * 3 2 1 7 7 C 1.37882 * 119.99527 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99524 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00182 * 359.97438 * 7 2 1 10 10 N 1.46507 * 109.47298 * 179.97438 * 9 7 2 11 11 C 1.34770 * 120.00165 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99942 * 359.97438 * 11 10 9 13 13 C 1.50693 * 119.99801 * 180.02562 * 11 10 9 14 14 N 1.46506 * 109.47283 * 179.97438 * 13 11 10 15 15 C 1.35600 * 116.85599 * 89.99510 * 14 13 11 16 16 O 1.21615 * 122.79545 * 359.97438 * 15 14 13 17 17 S 1.78658 * 114.40779 * 180.02562 * 15 14 13 18 18 C 1.77526 * 112.60323 * 0.02562 * 17 15 14 19 19 C 1.37294 * 123.02197 * 180.02562 * 18 17 15 20 20 C 1.38499 * 119.03690 * 179.69686 * 19 18 17 21 21 C 1.38676 * 119.98464 * 0.27944 * 20 19 18 22 22 C 1.37653 * 121.30197 * 0.02562 * 21 20 19 23 23 C 1.40013 * 119.84863 * 359.97438 * 22 21 20 24 24 C 1.32260 * 116.84884 * 270.59023 * 14 13 11 25 25 O 1.21606 * 114.56119 * 359.48700 * 24 14 13 26 26 H 0.97002 * 119.99848 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.47072 * 60.00119 * 9 7 2 28 28 H 1.08994 * 109.47133 * 299.99973 * 9 7 2 29 29 H 0.97002 * 119.99617 * 0.02562 * 10 9 7 30 30 H 1.08997 * 109.47548 * 59.99869 * 13 11 10 31 31 H 1.08999 * 109.47500 * 299.99699 * 13 11 10 32 32 H 1.08002 * 120.48508 * 359.97438 * 19 18 17 33 33 H 1.08005 * 120.00704 * 180.25366 * 20 19 18 34 34 H 1.07998 * 119.35254 * 179.97438 * 21 20 19 35 35 H 1.08002 * 120.07189 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6128 -0.0018 11 6 1.7536 -4.8834 -0.0025 12 8 0.5612 -5.1050 -0.0017 13 6 2.7329 -6.0288 -0.0032 14 7 2.0003 -7.2976 -0.0033 15 6 1.6935 -7.8277 -1.2131 16 8 1.9999 -7.2950 -2.2626 17 16 0.8005 -9.3732 -1.1370 18 6 0.4942 -9.9029 0.5296 19 6 -0.1750 -11.0620 0.8352 20 6 -0.3627 -11.3992 2.1653 21 6 0.1177 -10.5674 3.1656 22 6 0.7840 -9.4005 2.8668 23 6 0.9869 -9.0366 1.5301 24 6 1.6916 -7.8092 1.1766 25 8 2.0712 -7.1527 2.1272 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 3.1566 -3.4356 -0.0021 30 1 3.3596 -5.9717 0.8868 31 1 3.3595 -5.9707 -0.8932 32 1 -0.5459 -11.7039 0.0498 33 1 -0.8834 -12.3095 2.4235 34 1 -0.0347 -10.8400 4.1994 35 1 1.1494 -8.7672 3.6616 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775217428.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:34 Heat of formation + Delta-G solvation = -75.160955 kcal Electronic energy + Delta-G solvation = -23636.291358 eV Core-core repulsion = 19918.628612 eV Total energy + Delta-G solvation = -3717.662746 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.066 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.09534 -40.85745 -40.26345 -39.47949 -36.74786 -36.23028 -34.49178 -32.99044 -32.27288 -30.80616 -28.77956 -26.49685 -25.34822 -24.38754 -23.99132 -22.23100 -21.45050 -20.32507 -19.46570 -18.96367 -18.41093 -18.10998 -17.11319 -17.10717 -17.01445 -16.49147 -16.44913 -16.05363 -15.75549 -15.67328 -15.33449 -15.20349 -14.76561 -14.36095 -14.15105 -14.05565 -13.55550 -13.34003 -13.01863 -12.76565 -12.70577 -12.29257 -12.20849 -11.94932 -11.77388 -11.58397 -11.40240 -11.32343 -10.85688 -10.85539 -10.24523 -10.02306 -9.26525 -8.33913 -6.51697 -1.00522 -0.75918 -0.13507 0.27271 0.37864 1.25482 1.40460 1.43780 1.45901 1.52456 1.53609 2.23107 2.42426 2.55929 2.90632 3.00788 3.44004 3.53001 3.79289 3.84839 3.97582 4.03482 4.15221 4.22744 4.32958 4.79373 4.87910 4.98709 5.11106 5.12850 5.27048 5.34345 5.35117 5.55391 5.64083 5.67379 5.75759 6.14792 6.55955 6.66338 7.12894 7.27300 8.78419 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.023813 B = 0.002989 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.560690 B = 9364.584703 C = 9912.682311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.989 3.011 4 H -0.261 1.261 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.559 4.559 8 H 0.087 0.913 9 C 0.269 3.731 10 N -0.696 5.696 11 C 0.489 3.511 12 O -0.597 6.597 13 C 0.077 3.923 14 N -0.548 5.548 15 C 0.536 3.464 16 O -0.452 6.452 17 S -0.001 6.001 18 C -0.068 4.068 19 C -0.085 4.085 20 C -0.039 4.039 21 C -0.118 4.118 22 C -0.036 4.036 23 C -0.173 4.173 24 C 0.544 3.456 25 O -0.526 6.526 26 H 0.270 0.730 27 H -0.012 1.012 28 H -0.013 1.013 29 H 0.413 0.587 30 H 0.153 0.847 31 H 0.152 0.848 32 H 0.176 0.824 33 H 0.191 0.809 34 H 0.174 0.826 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.887 -28.618 4.800 29.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.812 3.188 4 H -0.185 1.185 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.597 4.597 8 H 0.105 0.895 9 C 0.147 3.853 10 N -0.346 5.346 11 C 0.275 3.725 12 O -0.479 6.479 13 C -0.051 4.051 14 N -0.292 5.292 15 C 0.218 3.782 16 O -0.326 6.326 17 S 0.241 5.759 18 C -0.182 4.182 19 C -0.108 4.108 20 C -0.059 4.059 21 C -0.137 4.137 22 C -0.056 4.056 23 C -0.180 4.180 24 C 0.338 3.662 25 O -0.404 6.404 26 H 0.079 0.921 27 H 0.006 0.994 28 H 0.005 0.995 29 H 0.249 0.751 30 H 0.171 0.829 31 H 0.169 0.831 32 H 0.194 0.806 33 H 0.208 0.792 34 H 0.191 0.809 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.970 -28.535 3.700 28.927 hybrid contribution 0.797 2.356 0.815 2.618 sum 3.767 -26.178 4.514 26.831 Atomic orbital electron populations 1.70143 1.08378 1.28790 1.49663 1.26127 0.95828 1.04082 0.93620 0.85145 0.77877 0.76226 0.79597 1.18524 1.20932 1.18527 1.21573 0.94430 0.90294 1.53401 0.89508 1.18583 0.88583 0.84119 0.94065 1.46065 1.11664 1.04969 1.71944 1.21255 0.89714 0.85454 0.76102 1.90641 1.19016 1.85486 1.52776 1.21822 0.94078 0.79546 1.09645 1.46682 1.52293 1.23273 1.06965 1.23386 0.81056 0.89338 0.84426 1.90897 1.52251 1.59935 1.29468 1.84947 1.63819 1.19244 1.07858 1.22367 1.03323 0.99523 0.92962 1.20942 0.97044 0.93314 0.99454 1.22160 0.93856 0.99714 0.90212 1.21676 0.96629 0.92590 1.02800 1.21509 0.94129 0.96862 0.93089 1.19481 1.07651 0.93883 0.96987 1.18106 0.79336 0.86922 0.81848 1.90807 1.50054 1.57584 1.41933 0.92126 0.99448 0.99529 0.75088 0.82939 0.83065 0.80635 0.79187 0.80873 0.84333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.72 13.29 21.45 0.28 -57.44 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.99 43.30 29.54 68.60 2.03 45.33 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 6 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 7 C -0.56 -31.48 9.28 25.60 0.24 -31.25 16 8 H 0.09 4.38 7.60 -2.91 -0.02 4.35 16 9 C 0.27 15.58 5.43 85.63 0.46 16.04 16 10 N -0.70 -31.84 5.55 -466.79 -2.59 -34.43 16 11 C 0.49 22.01 7.84 87.66 0.69 22.70 16 12 O -0.60 -32.61 16.38 -3.04 -0.05 -32.66 16 13 C 0.08 2.53 5.25 85.63 0.45 2.97 16 14 N -0.55 -18.25 2.04 -776.41 -1.58 -19.83 16 15 C 0.54 17.31 8.18 129.66 1.06 18.37 16 16 O -0.45 -16.43 16.77 -4.08 -0.07 -16.49 16 17 S 0.00 -0.02 22.03 -56.49 -1.24 -1.27 16 18 C -0.07 -1.34 6.19 22.78 0.14 -1.20 16 19 C -0.08 -0.88 9.93 22.11 0.22 -0.66 16 20 C -0.04 -0.22 10.08 22.44 0.23 0.00 16 21 C -0.12 -1.09 9.96 22.24 0.22 -0.87 16 22 C -0.04 -0.67 9.51 22.56 0.21 -0.45 16 23 C -0.17 -4.27 5.88 -20.14 -0.12 -4.39 16 24 C 0.54 17.65 7.38 86.61 0.64 18.29 16 25 O -0.53 -19.25 14.47 -4.05 -0.06 -19.30 16 26 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 27 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 28 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 29 H 0.41 15.32 8.32 -92.71 -0.77 14.55 16 30 H 0.15 4.37 6.92 -2.39 -0.02 4.35 16 31 H 0.15 4.13 7.31 -2.39 -0.02 4.11 16 32 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16 33 H 0.19 -0.60 8.06 -2.91 -0.02 -0.62 16 34 H 0.17 0.43 8.06 -2.91 -0.02 0.41 16 35 H 0.14 2.75 7.49 -2.91 -0.02 2.72 16 Total: -1.00 -85.90 328.14 2.01 -83.88 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.39 Total: 12.01 kcal Atomic # 6 Polarization: 35.30 SS G_CDS: 4.90 Total: 40.20 kcal Atomic # 7 Polarization: -107.81 SS G_CDS: -3.89 Total: -111.70 kcal Atomic # 8 Polarization: -68.28 SS G_CDS: -0.18 Total: -68.46 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -1.24 Total: -1.27 kcal Total: -85.90 2.01 -83.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775217428.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.723 kcal (2) G-P(sol) polarization free energy of solvation -85.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds