Wall clock time and date at job start Fri Apr 10 2020 18:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36932 * 120.00527 * 2 1 4 4 H 1.08000 * 120.00406 * 203.98828 * 3 2 1 5 5 C 1.38820 * 119.99788 * 23.98805 * 3 2 1 6 6 N 1.31617 * 120.00072 * 12.16070 * 5 3 2 7 7 Si 1.86794 * 119.99745 * 192.16010 * 5 3 2 8 8 H 1.48500 * 109.47397 * 60.00348 * 7 5 3 9 9 H 1.48505 * 109.46915 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47349 * 299.99796 * 7 5 3 11 11 C 1.46505 * 119.99368 * 180.02562 * 2 1 3 12 12 N 1.46503 * 109.46875 * 269.99440 * 11 2 1 13 13 N 1.40267 * 126.57673 * 285.31389 * 12 11 2 14 14 C 1.30157 * 107.74962 * 180.14122 * 13 12 11 15 15 C 1.47903 * 125.46494 * 179.85707 * 14 13 12 16 16 C 1.39558 * 120.13761 * 174.51002 * 15 14 13 17 17 C 1.37953 * 119.85429 * 180.27587 * 16 15 14 18 18 C 1.38373 * 120.13718 * 359.71513 * 17 16 15 19 19 C 1.38326 * 120.29078 * 0.03155 * 18 17 16 20 20 C 1.37991 * 120.13588 * 359.97017 * 19 18 17 21 21 N 1.48036 * 120.06933 * 180.02562 * 20 19 18 22 22 O 1.21794 * 119.99895 * 131.53811 * 21 20 19 23 23 O 1.21799 * 119.99661 * 311.26332 * 21 20 19 24 24 O 1.35088 * 109.06843 * 359.59742 * 14 13 12 25 25 C 1.34323 * 108.86509 * 0.25673 * 24 14 13 26 26 O 1.21690 * 126.26575 * 179.97438 * 25 24 14 27 27 H 1.09001 * 109.46727 * 271.75094 * 1 2 3 28 28 H 1.08999 * 109.46658 * 31.74632 * 1 2 3 29 29 H 1.08999 * 109.47432 * 151.74570 * 1 2 3 30 30 H 0.96992 * 119.99937 * 179.97438 * 6 5 3 31 31 H 1.09005 * 109.46967 * 150.00147 * 11 2 1 32 32 H 1.08998 * 109.47601 * 30.00029 * 11 2 1 33 33 H 1.08000 * 120.07483 * 0.04135 * 16 15 14 34 34 H 1.07993 * 119.92956 * 179.74952 * 17 16 15 35 35 H 1.08007 * 119.85405 * 180.02562 * 18 17 16 36 36 H 1.07997 * 119.93423 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1598 1.2262 -0.3802 5 6 1.5457 2.3361 0.4888 6 7 0.4205 2.2515 1.1663 7 14 2.3298 4.0041 0.1848 8 1 2.4299 4.2450 -1.2771 9 1 1.4944 5.0640 0.8045 10 1 3.6878 4.0294 0.7849 11 6 2.1974 -1.2689 -0.0006 12 7 2.4416 -1.6923 1.3805 13 7 3.3817 -1.1479 2.2679 14 6 3.2905 -1.7990 3.3911 15 6 4.1072 -1.5465 4.5981 16 6 3.8395 -2.2353 5.7820 17 6 4.6012 -1.9910 6.9059 18 6 5.6326 -1.0697 6.8594 19 6 5.9064 -0.3875 5.6876 20 6 5.1518 -0.6228 4.5565 21 7 5.4465 0.1077 3.3031 22 8 5.5458 -0.5006 2.2527 23 8 5.5847 1.3177 3.3216 24 8 2.3265 -2.7387 3.2796 25 6 1.8010 -2.6774 2.0449 26 8 0.9109 -3.3814 1.6056 27 1 -0.3633 0.0314 1.0272 28 1 -0.3632 0.8739 -0.5407 29 1 -0.3634 -0.9052 -0.4865 30 1 -0.0014 3.0552 1.5081 31 1 3.1499 -1.1384 -0.5143 32 1 1.6083 -2.0283 -0.5147 33 1 3.0353 -2.9552 5.8193 34 1 4.3925 -2.5204 7.8238 35 1 6.2263 -0.8823 7.7420 36 1 6.7124 0.3306 5.6579 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794623013.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:45 Heat of formation + Delta-G solvation = 76.214845 kcal Electronic energy + Delta-G solvation = -27586.191555 eV Core-core repulsion = 23464.632837 eV Total energy + Delta-G solvation = -4121.558718 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.100 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.74085 -41.75966 -39.48886 -37.36875 -36.31333 -36.05771 -34.71178 -32.99088 -32.07728 -31.50946 -29.77151 -26.85312 -26.29918 -25.82268 -24.06084 -23.26586 -22.12187 -21.51647 -20.96485 -19.16910 -18.25607 -17.78225 -17.28043 -17.20764 -16.79486 -16.51259 -15.83493 -15.46657 -15.16326 -15.01391 -14.71329 -14.32489 -13.89426 -13.71127 -13.38464 -12.78079 -12.59926 -12.22240 -12.05096 -11.85563 -11.56687 -11.39185 -11.12188 -10.93662 -10.83400 -10.73643 -10.61433 -10.51753 -10.22004 -10.20018 -10.03036 -9.86551 -9.78811 -8.79046 -8.18213 -7.26074 -6.01737 -3.47927 -0.09381 0.45148 1.23454 1.58775 2.14820 2.28172 2.75693 2.89034 3.11347 3.37464 3.39544 3.45043 4.03544 4.27973 4.34952 4.38011 4.58221 4.65620 4.85122 5.09578 5.25776 5.28535 5.32220 5.48372 5.56642 5.72973 5.83026 6.01809 6.08145 6.22063 6.55000 6.68367 6.76989 7.13065 7.47771 7.65529 7.92688 7.99532 8.11644 8.19265 8.91612 9.48556 9.93763 11.01483 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.012107 B = 0.005937 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.190387 B = 4714.872204 C = 6205.043087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.146 3.854 2 N -0.545 5.545 3 C -0.267 4.267 4 H 0.085 0.915 5 C 0.017 3.983 6 N -0.891 5.891 7 Si 0.913 3.087 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.270 1.270 11 C 0.352 3.648 12 N -0.422 5.422 13 N -0.177 5.177 14 C 0.186 3.814 15 C 0.055 3.945 16 C -0.083 4.083 17 C -0.079 4.079 18 C -0.102 4.102 19 C -0.064 4.064 20 C -0.002 4.002 21 N 0.015 4.985 22 O -0.086 6.086 23 O -0.162 6.162 24 O -0.284 6.284 25 C 0.589 3.411 26 O -0.508 6.508 27 H 0.032 0.968 28 H 0.060 0.940 29 H 0.012 0.988 30 H 0.260 0.740 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.155 0.845 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.212 -7.796 11.754 17.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 N -0.262 5.262 3 C -0.397 4.397 4 H 0.103 0.897 5 C -0.185 4.185 6 N -0.532 5.532 7 Si 0.741 3.259 8 H -0.204 1.204 9 H -0.215 1.215 10 H -0.195 1.195 11 C 0.146 3.854 12 N -0.263 5.263 13 N -0.009 5.009 14 C -0.037 4.037 15 C 0.052 3.948 16 C -0.104 4.104 17 C -0.097 4.097 18 C -0.122 4.122 19 C -0.083 4.083 20 C -0.085 4.085 21 N 0.544 4.456 22 O -0.318 6.318 23 O -0.373 6.373 24 O -0.181 6.181 25 C 0.341 3.659 26 O -0.392 6.392 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.031 0.969 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.172 0.828 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 9.665 -7.736 11.702 17.035 hybrid contribution -0.224 0.586 0.184 0.654 sum 9.441 -7.150 11.886 16.779 Atomic orbital electron populations 1.21073 0.81470 0.97415 0.99840 1.45194 1.03221 1.01772 1.75967 1.19422 0.99847 0.84360 1.36072 0.89723 1.25268 0.97236 0.99714 0.96262 1.70081 1.18944 1.28651 1.35572 0.86177 0.79390 0.82063 0.78270 1.20394 1.21472 1.19484 1.22514 0.97300 0.87805 0.77798 1.55359 1.28726 1.28139 1.14082 1.77841 1.08544 1.16731 0.97758 1.23013 0.93783 0.91387 0.95515 1.16904 0.92178 0.95472 0.90265 1.21351 1.00233 0.98706 0.90110 1.21449 0.93475 0.96259 0.98498 1.21310 0.97905 0.95664 0.97316 1.20855 0.98788 0.98766 0.89876 1.20983 1.00852 0.99343 0.87303 1.43254 0.99250 1.01149 1.01914 1.94584 1.49727 1.69455 1.18061 1.94574 1.54254 0.95584 1.92880 1.84950 1.45791 1.51394 1.36013 1.20318 0.83663 0.83588 0.78336 1.91102 1.30409 1.49187 1.68495 0.94923 0.92130 0.96945 0.92990 0.89029 0.89040 0.82754 0.83392 0.83299 0.83054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 3.62 9.02 59.85 0.54 4.16 16 2 N -0.54 -13.67 3.16 -184.85 -0.58 -14.25 16 3 C -0.27 -7.20 9.65 -15.06 -0.15 -7.35 16 4 H 0.09 2.25 7.85 -52.49 -0.41 1.84 16 5 C 0.02 0.47 5.09 -17.43 -0.09 0.38 16 6 N -0.89 -25.66 10.75 55.49 0.60 -25.06 16 7 Si 0.91 21.82 29.57 -169.99 -5.03 16.80 16 8 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 11 C 0.35 7.59 7.06 -63.74 -0.45 7.14 16 12 N -0.42 -9.46 3.88 -68.48 -0.27 -9.73 16 13 N -0.18 -3.91 8.68 31.97 0.28 -3.63 16 14 C 0.19 3.56 7.73 -14.31 -0.11 3.45 16 15 C 0.06 0.82 5.87 -104.97 -0.62 0.20 16 16 C -0.08 -0.86 9.71 -39.19 -0.38 -1.24 16 17 C -0.08 -0.54 10.03 -39.64 -0.40 -0.93 16 18 C -0.10 -0.69 10.04 -39.50 -0.40 -1.08 16 19 C -0.06 -0.64 9.79 -39.64 -0.39 -1.03 16 20 C 0.00 -0.02 6.35 -79.55 -0.51 -0.53 16 21 N 0.02 0.29 3.77 34.15 0.13 0.41 16 22 O -0.09 -1.73 15.79 -29.46 -0.47 -2.20 16 23 O -0.16 -3.26 19.12 -29.46 -0.56 -3.82 16 24 O -0.28 -5.65 10.44 -20.75 -0.22 -5.87 16 25 C 0.59 13.10 9.24 54.15 0.50 13.60 16 26 O -0.51 -12.04 17.75 -19.00 -0.34 -12.38 16 27 H 0.03 0.89 7.52 -51.93 -0.39 0.50 16 28 H 0.06 1.55 7.16 -51.93 -0.37 1.18 16 29 H 0.01 0.26 7.87 -51.93 -0.41 -0.14 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.09 1.83 8.04 -51.93 -0.42 1.42 16 32 H 0.09 1.79 7.63 -51.93 -0.40 1.39 16 33 H 0.15 1.40 7.90 -52.49 -0.41 0.98 16 34 H 0.15 0.48 8.06 -52.49 -0.42 0.06 16 35 H 0.15 0.47 8.06 -52.48 -0.42 0.05 16 36 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 330.26 15.07 4.98 4.98 Total: -1.00 -34.51 330.26 -7.13 -41.64 By element: Atomic # 1 Polarization: -0.44 SS G_CDS: -3.21 Total: -3.65 kcal Atomic # 6 Polarization: 19.20 SS G_CDS: -2.44 Total: 16.76 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 0.15 Total: -52.26 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -1.58 Total: -24.27 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.51 -7.13 -41.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794623013.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.854 kcal (2) G-P(sol) polarization free energy of solvation -34.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds